Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009463.1

Orthogroup ID

OG0007660

Physical Location & Seq

Genomic Coordinates Forward (+)

18474 .. 21877

Gene Structure 3404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009463.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atgtgcgtggcgtgggagctagaaaagcatgagtttcagaagaagagattccggtcatggtataattttctgggtttttgggttaaggttgattgggaggaattgatggctagggattcaaagatagggcttgatctcttgcttgggattcccgctgttgctgtgattccaaggtttagctgctgggataagagaggtcattgttttgtctcggttcaaagaactaacaccgatgacctacaacccaccaccatcagcaacaaagagcaaataaccacaaccaaccataaaccatcaattacaaaacacccaccggagcaagactactacgatcagcaggggatcaaatcctccaaatcctacttcacctctcctagcaacctcaagctcttcacccgccaatggcttcccctcgtctctcctccacgtggcctcatcttcatggtccatggctacggcaacaacatcagcttgacttttcaagccacaaccatcttcctctcccagaacggcttcgcctgcttccctctcgacatcgaatcccacagccagtcccaccgcctcagagccttcgtcccaaacgtcgatgtggtcgtcccacagtcggtcccacagccacagccggttcttcttcaatttcgtcaagcaaaaaccccaataggaaaccttaccgtccttcctctacggcgagtcgatgggctgcgtgatctaacatcagaaattggcagcgaagaagatgggtttgttgcatcttcaaggtgggtttatgggtcagatgatgaagaagaggaagagggtaggttttggattcgacccgtgattagagttgggagctcacagtcgcccatcgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

284

Amino Acids

32.56

Weight (kDa)

6.67

Isoelectric Point (pI)

66.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11090
fragaria_vesca	FvH4_3g04590
malus_domestica	MD10G1300100.v1.1
prunus_persica	Prupe.4G040700_v2.0.a1
pyrus_communis	pycom10g25280
rosa_chinensis	RchiOBHm_Chr1g0341431 RchiOBHm_Chr2g0096241 RchiOBHm_Chr2g0170991 RchiOBHm_Chr5g0007531 RchiOBHm_Chr5g0049361
rosa_laevigata	RLG00000013401 RLG00000031465
rosa_multiflora	Rmu_co8522595.1_g000002 Rmu_sc0009463.1_g000005 Rmu_sc0009463.1_g000007 Rmu_ssc0000182.1_g000012
rosa_roxburghii	Rroxscaffold_1G00067270 Rroxscaffold_2G00139780
rosa_rugosa	Rorug04G0428100.1
rosa_samantha	Rh4CG004300 Rh5BG053500 Rh5CG063300 Rh5DG052500
rosa_wichuraiana	Rw5G005430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	153, 397, 559
AclWI	GGATC	1 cut(s)	350
AcvI	CACGTG	1 cut(s)	428
AfiI	CCNNNNNNNGG	3 cut(s)	402, 428, 604
AgsI	TTSAA	5 cut(s)	120, 218, 482, 635, 756
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AluBI	AGCT	5 cut(s)	19, 180, 388, 471, 834
AluI	AGCT	5 cut(s)	19, 180, 388, 471, 834
Alw21I	GWGCWC	1 cut(s)	836
Alw26I	GTCTC	2 cut(s)	214, 421
AlwI	GGATC	1 cut(s)	350
AoxI	GGCC	1 cut(s)	430
ApeKI	GCWGC	3 cut(s)	180, 700, 726
Asp700I	GAANNNNTTC	2 cut(s)	47, 512
AspS9I	GGNCC	2 cut(s)	445, 607
AsuHPI	GGTGA	2 cut(s)	358, 385
AvaII	GGWCC	2 cut(s)	445, 607
BanII	GRGCYC	1 cut(s)	836
BbrPI	CACGTG	1 cut(s)	428
Bbv12I	GWGCWC	1 cut(s)	836
BbvI	GCAGC	3 cut(s)	167, 687, 738
BccI	CCATC	7 cut(s)	100, 260, 301, 500, 689, 731, 854
BceAI	ACGGC	3 cut(s)	472, 526, 701
BcoDI	GTCTC	2 cut(s)	214, 421
BfaI	CTAG	3 cut(s)	20, 111, 375
BisI	GCNGC	3 cut(s)	181, 701, 727
BlsI	GCNGC	3 cut(s)	182, 702, 728
Bme18I	GGWCC	2 cut(s)	445, 607
BmgT120I	GGNCC	2 cut(s)	445, 607
BmiI	GGNNCC	1 cut(s)	609
BmsI	GCATC	1 cut(s)	758
BpuEI	CTTGAG	1 cut(s)	368
BsaAI	YACGTR	1 cut(s)	428
BsaJI	CCNNGG	2 cut(s)	170, 448
BsaWI	WCCGGW	2 cut(s)	51, 313
Bsc4I	CCNNNNNNNGG	3 cut(s)	402, 428, 604
Bse118I	RCCGGY	1 cut(s)	622
Bse1I	ACTGG	1 cut(s)	550
BseDI	CCNNGG	2 cut(s)	170, 448
BseLI	CCNNNNNNNGG	3 cut(s)	402, 428, 604
BseMII	CTCAG	1 cut(s)	577
BseNI	ACTGG	1 cut(s)	550
BseRI	GAGGAG	1 cut(s)	411
BseXI	GCAGC	3 cut(s)	167, 687, 738
BseYI	CCCAGC	1 cut(s)	183
BshFI	GGCC	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	836
BsiSI	CCGG	3 cut(s)	52, 314, 623
BslFI	GGGAC	4 cut(s)	538, 560, 581, 593
BslI	CCNNNNNNNGG	3 cut(s)	402, 428, 604
BsmAI	GTCTC	2 cut(s)	214, 421
BsmBI	CGTCTC	1 cut(s)	421
BsmFI	GGGAC	4 cut(s)	538, 560, 581, 593
BsnI	GGCC	1 cut(s)	432
Bsp1286I	GDGCHC	1 cut(s)	836
Bsp143I	GATC	4 cut(s)	133, 331, 342, 706
Bsp19I	CCATGG	1 cut(s)	448
BspACI	CCGC	3 cut(s)	153, 397, 559
BspANI	GGCC	1 cut(s)	432
BspCNI	CTCAG	1 cut(s)	576
BspLI	GGNNCC	1 cut(s)	609
BspPI	GGATC	1 cut(s)	350
BspQI	GCTCTTC	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	622
BsrI	ACTGG	1 cut(s)	550
BssAI	RCCGGY	1 cut(s)	622
BssECI	CCNNGG	2 cut(s)	170, 448
BssMI	GATC	4 cut(s)	133, 331, 342, 706
BssT1I	CCWWGG	2 cut(s)	170, 448
Bst4CI	ACNGT	3 cut(s)	603, 673, 840
Bst6I	CTCTTC	4 cut(s)	38, 395, 780, 786
BstBAI	YACGTR	1 cut(s)	428
BstC8I	GCNNGC	1 cut(s)	520
BstDEI	CTNAG	1 cut(s)	563
BstDSI	CCRYGG	1 cut(s)	448
BstKTI	GATC	4 cut(s)	136, 334, 345, 709
BstMAI	GTCTC	2 cut(s)	214, 421
BstMBI	GATC	4 cut(s)	133, 331, 342, 706
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 519
BstV1I	GCAGC	3 cut(s)	167, 687, 738
BsuRI	GGCC	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	448
Cac8I	GCNNGC	1 cut(s)	520
Cfr10I	RCCGGY	1 cut(s)	622
Cfr13I	GGNCC	2 cut(s)	445, 607
CviAII	CATG	4 cut(s)	29, 57, 442, 449
DdeI	CTNAG	1 cut(s)	563
DpnI	GATC	4 cut(s)	135, 333, 344, 708
DpnII	GATC	4 cut(s)	133, 331, 342, 706
Eam1104I	CTCTTC	4 cut(s)	38, 395, 780, 786
EarI	CTCTTC	4 cut(s)	38, 395, 780, 786
Ecl136II	GAGCTC	1 cut(s)	834
Eco130I	CCWWGG	2 cut(s)	170, 448
Eco24I	GRGCYC	1 cut(s)	836
Eco47I	GGWCC	2 cut(s)	445, 607
Eco53kI	GAGCTC	1 cut(s)	834
Eco72I	CACGTG	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	834
EcoT14I	CCWWGG	2 cut(s)	170, 448
EcoT38I	GRGCYC	1 cut(s)	836
ErhI	CCWWGG	2 cut(s)	170, 448
Esp3I	CGTCTC	1 cut(s)	421
FaeI	CATG	4 cut(s)	32, 60, 445, 452
FaiI	YATR	7 cut(s)	30, 58, 63, 288, 443, 450, 768
FaqI	GGGAC	4 cut(s)	538, 560, 581, 593
FatI	CATG	4 cut(s)	28, 56, 441, 448
FauI	CCCGC	2 cut(s)	160, 404
Fnu4HI	GCNGC	3 cut(s)	181, 701, 727
FriOI	GRGCYC	1 cut(s)	836
Fsp4HI	GCNGC	3 cut(s)	181, 701, 727
FspBI	CTAG	3 cut(s)	20, 111, 375
GluI	GCNGC	3 cut(s)	181, 701, 727
GsaI	CCCAGC	1 cut(s)	187
HaeIII	GGCC	1 cut(s)	432
HapII	CCGG	3 cut(s)	52, 314, 623
Hin1II	CATG	4 cut(s)	32, 60, 445, 452
HinfI	GANTC	7 cut(s)	48, 116, 148, 166, 539, 690, 808
HpaII	CCGG	3 cut(s)	52, 314, 623
HphI	GGTGA	2 cut(s)	358, 385
Hpy188I	TCNGA	4 cut(s)	39, 566, 718, 775
Hpy188III	TCNNGA	1 cut(s)	530
Hpy99I	CGWCG	1 cut(s)	587
HpyAV	CCTTC	2 cut(s)	580, 686
HpyCH4III	ACNGT	3 cut(s)	603, 673, 840
HpyCH4IV	ACGT	2 cut(s)	427, 582
HpyCH4V	TGCA	1 cut(s)	749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 519
HpyF3I	CTNAG	1 cut(s)	563
HpySE526I	ACGT	2 cut(s)	427, 582
Hsp92II	CATG	4 cut(s)	32, 60, 445, 452
Kzo9I	GATC	4 cut(s)	133, 331, 342, 706
LguI	GCTCTTC	1 cut(s)	395
LmnI	GCTCC	3 cut(s)	16, 316, 831
LpnPI	CCDG	9 cut(s)	56, 65, 169, 323, 327, 518, 532, 563, 636
Lsp1109I	GCAGC	3 cut(s)	167, 687, 738
LweI	GCATC	1 cut(s)	758
MaeI	CTAG	3 cut(s)	20, 111, 375
MaeII	ACGT	2 cut(s)	427, 582
MalI	GATC	4 cut(s)	135, 333, 344, 708
MboI	GATC	4 cut(s)	133, 331, 342, 706
MhlI	GDGCHC	1 cut(s)	836
MluCI	AATT	5 cut(s)	64, 101, 297, 635, 720
MlyI	GAGTC	1 cut(s)	699
MroXI	GAANNNNTTC	2 cut(s)	47, 512
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	440
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	3 cut(s)	52, 314, 623
MwoI	GCNNNNNNNGC	2 cut(s)	25, 519
NcoI	CCATGG	1 cut(s)	448
NdeII	GATC	4 cut(s)	133, 331, 342, 706
NlaIII	CATG	4 cut(s)	32, 60, 445, 452
NlaIV	GGNNCC	1 cut(s)	609
PciSI	GCTCTTC	1 cut(s)	395
PcsI	WCGNNNNNNNCGW	2 cut(s)	579, 591
PdmI	GAANNNNTTC	2 cut(s)	47, 512
PfeI	GAWTC	6 cut(s)	48, 116, 148, 166, 539, 808
PkrI	GCNGC	3 cut(s)	182, 702, 728
PleI	GAGTC	1 cut(s)	698
PmaCI	CACGTG	1 cut(s)	428
PmlI	CACGTG	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	698
Ppu21I	YACGTR	1 cut(s)	428
Psp124BI	GAGCTC	1 cut(s)	836
PspCI	CACGTG	1 cut(s)	428
PspFI	CCCAGC	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	609
PspPI	GGNCC	2 cut(s)	445, 607
RseI	CAYNNNNRTG	1 cut(s)	440
SacI	GAGCTC	1 cut(s)	836
SapI	GCTCTTC	1 cut(s)	395
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	3 cut(s)	181, 701, 727
Sau3AI	GATC	4 cut(s)	133, 331, 342, 706
Sau96I	GGNCC	2 cut(s)	445, 607
SchI	GAGTC	1 cut(s)	699
SduI	GDGCHC	1 cut(s)	836
SfaNI	GCATC	1 cut(s)	758
SinI	GGWCC	2 cut(s)	445, 607
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	5 cut(s)	64, 101, 297, 635, 720
SsiI	CCGC	3 cut(s)	153, 397, 559
SspMI	CTAG	3 cut(s)	20, 111, 375
SstI	GAGCTC	1 cut(s)	836
StyI	CCWWGG	2 cut(s)	170, 448
TaaI	ACNGT	3 cut(s)	603, 673, 840
TaiI	ACGT	2 cut(s)	430, 585
TaqI	TCGA	6 cut(s)	531, 537, 585, 693, 811, 849
TaqII	GACCGA	1 cut(s)	595
TasI	AATT	5 cut(s)	64, 101, 297, 635, 720
TfiI	GAWTC	6 cut(s)	48, 116, 148, 166, 539, 808
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TseI	GCWGC	3 cut(s)	180, 700, 726
TspDTI	ATGAA	2 cut(s)	430, 795
VpaK11BI	GGWCC	2 cut(s)	445, 607
XmnI	GAANNNNTTC	2 cut(s)	47, 512
XspI	CTAG	3 cut(s)	20, 111, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.