Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009463.1

Orthogroup ID

OG0007660

Physical Location & Seq

Genomic Coordinates Forward (+)

25226 .. 32009

Gene Structure 6784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009463.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

atgtgcgtggcgtgggagctagaaaagcatgagtttcagaagaagagattccggccatggtatgattttctgggtttttgggttaaggttgattgggaggaattgatggctagggattcacagatggggcttgatctcttacttgggattcccgctgttgctgtgattccaaggtttagctgctgggataagagaggtcattgttttgtctcggttcaaagggttttacagggtactcgagggctggagaggtgctatttccttgattttcttggccccagaggatttgcggtcgagtttgcgtgcgatgagttttccgaagaggattgcccggacaatctcacatttcgagtgaatactgaaaagagtagctctagtgctgtgtatgattacttctctgctaagcttgctcatgttgaatgtcgtaatggaatggatgcaagtttgttacaagttgaggtcagggatcgtgtggagatggtgcttaagtacattgaggatggagatctccgtcactggagcttacccgatattagggcgtttaatattggacttggtgaatggcgctcaaagttgaattgctttactaatccatacatgtatgaacagttaccggagataagtgctgtggatgttgtcgctatggggaagtcttatatttctgctcgccaaaaggctgcaaaaaagttatggggagtctctggagtgagagctgatgggaattccgagttaagcgatgaaattggcaagcagcttagtgtgaaaagtgccgccgctggtcttaggcctattggagctgttatatacatgcaacggaaaaacctcaaaatgtgctcaaggagtattgatactgctaccgatacctctgaagtcgcaaaggtgtggctccaatgctccattattagcgtgatcacagcagcccagcgacaccgctccacagaccggcagccaagccccacagcgcctagcccagtcgcacagcctagcgcctcgatcccgtcaacccccaccggccaaccgcgtagcccagatcggccttcgtctccctctccggaccggccccagcactaccgccagcctaatcgacgggcctcacctcaccggccagacctccatatccttcttacggccccttgcccagcacacacacagccttcgatcaagccccgcctgcgcagatcccagcagccactacccggtctcgacatccctccagatcggcctctagcctgctctacccgcctgacagcagctccgcgtcacttgcccaacgcgcatcctccagcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

429

Amino Acids

48.2

Weight (kDa)

8.95

Isoelectric Point (pI)

59.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11090
fragaria_vesca	FvH4_3g04590
malus_domestica	MD10G1300100.v1.1
prunus_persica	Prupe.4G040700_v2.0.a1
pyrus_communis	pycom10g25280
rosa_chinensis	RchiOBHm_Chr1g0341431 RchiOBHm_Chr2g0096241 RchiOBHm_Chr2g0170991 RchiOBHm_Chr5g0007531 RchiOBHm_Chr5g0049361
rosa_laevigata	RLG00000013401 RLG00000031465
rosa_multiflora	Rmu_co8522595.1_g000002 Rmu_sc0009463.1_g000005 Rmu_sc0009463.1_g000007 Rmu_ssc0000182.1_g000012
rosa_roxburghii	Rroxscaffold_1G00067270 Rroxscaffold_2G00139780
rosa_rugosa	Rorug04G0428100.1
rosa_samantha	Rh4CG004300 Rh5BG053500 Rh5CG063300 Rh5DG052500
rosa_wichuraiana	Rw5G005430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1175
AccBSI	CCGCTC	1 cut(s)	933
AccII	CGCG	3 cut(s)	1021, 1258, 1274
AccIII	TCCGGA	1 cut(s)	1051
AclWI	GGATC	3 cut(s)	474, 988, 1173
AcoI	YGGCCR	3 cut(s)	53, 1012, 1103
AcsI	RAATTY	1 cut(s)	721
AcuI	CTGAAG	1 cut(s)	888
AfaI	GTAC	2 cut(s)	235, 491
AfiI	CCNNNNNNNGG	4 cut(s)	534, 942, 1126, 1196
AflII	CTTAAG	1 cut(s)	485
AflIII	ACRYGT	1 cut(s)	597
AgsI	TTSAA	3 cut(s)	218, 419, 577
AluBI	AGCT	9 cut(s)	19, 180, 372, 406, 522, 713, 754, 797, 1253
AluI	AGCT	9 cut(s)	19, 180, 372, 406, 522, 713, 754, 797, 1253
Alw21I	GWGCWC	1 cut(s)	836
Alw26I	GTCTC	4 cut(s)	214, 703, 1047, 1205
AlwI	GGATC	3 cut(s)	474, 988, 1173
Ama87I	CYCGRG	1 cut(s)	237
Aor13HI	TCCGGA	1 cut(s)	1051
ApeKI	GCWGC	7 cut(s)	180, 677, 751, 917, 946, 1186, 1250
ApoI	RAATTY	1 cut(s)	721
Asp700I	GAANNNNTTC	1 cut(s)	47
AspLEI	GCGC	5 cut(s)	567, 964, 989, 1176, 1276
AspS9I	GGNCC	5 cut(s)	275, 1054, 1059, 1089, 1129
AsuC2I	CCSGG	2 cut(s)	332, 1197
AsuHPI	GGTGA	3 cut(s)	569, 1086, 1091
AvaI	CYCGRG	1 cut(s)	237
AvaII	GGWCC	1 cut(s)	1054
BarI	GAAGNNNNNNTAC	2 cut(s)	377, 409
Bbv12I	GWGCWC	1 cut(s)	836
BbvI	GCAGC	7 cut(s)	167, 664, 763, 929, 958, 1198, 1262
BccI	CCATC	5 cut(s)	100, 118, 472, 494, 710
BceAI	ACGGC	1 cut(s)	1143
BclI	TGATCA	1 cut(s)	909
BcnI	CCSGG	2 cut(s)	332, 1197
BcoDI	GTCTC	4 cut(s)	214, 703, 1047, 1205
BfaI	CTAG	6 cut(s)	20, 111, 375, 966, 984, 1226
BfoI	RGCGCY	3 cut(s)	568, 965, 990
BfrI	CTTAAG	1 cut(s)	485
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	9 cut(s)	181, 678, 752, 771, 774, 918, 947, 1187, 1251
BlpI	GCTNAGC	1 cut(s)	402
BlsI	GCNGC	9 cut(s)	182, 679, 753, 772, 775, 919, 948, 1188, 1252
Bme1390I	CCNGG	2 cut(s)	332, 1197
Bme18I	GGWCC	1 cut(s)	1054
BmeT110I	CYCGRG	1 cut(s)	237
BmgT120I	GGNCC	5 cut(s)	275, 1054, 1059, 1089, 1129
BmiI	GGNNCC	4 cut(s)	277, 887, 1061, 1131
BmrFI	CCNGG	2 cut(s)	332, 1197
BmrI	ACTGGG	1 cut(s)	965
BmsI	GCATC	2 cut(s)	427, 1285
BmuI	ACTGGG	1 cut(s)	965
BpmI	CTGGAG	5 cut(s)	266, 538, 723, 1197, 1266
Bpu1102I	GCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	820
BpuMI	CCSGG	2 cut(s)	332, 1197
BsaBI	GATNNNNATC	1 cut(s)	504
BsaI	GGTCTC	1 cut(s)	1205
BsaJI	CCNNGG	2 cut(s)	56, 170
BsaWI	WCCGGW	2 cut(s)	613, 1051
BsaXI	ACNNNNNCTCC	2 cut(s)	1237, 1267
Bsc4I	CCNNNNNNNGG	4 cut(s)	534, 942, 1126, 1196
Bse118I	RCCGGY	4 cut(s)	942, 1010, 1056, 1101
Bse1I	ACTGG	2 cut(s)	521, 971
Bse8I	GATNNNNATC	1 cut(s)	504
BseAI	TCCGGA	1 cut(s)	1051
BseDI	CCNNGG	2 cut(s)	56, 170
BseGI	GGATG	5 cut(s)	442, 505, 637, 1206, 1276
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	4 cut(s)	534, 942, 1126, 1196
BseNI	ACTGG	2 cut(s)	521, 971
BseXI	GCAGC	7 cut(s)	167, 664, 763, 929, 958, 1198, 1262
BseYI	CCCAGC	5 cut(s)	183, 921, 1062, 1138, 1182
Bsh1236I	CGCG	3 cut(s)	1021, 1258, 1274
Bsh1285I	CGRYCG	1 cut(s)	294
BsiEI	CGRYCG	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	836
BsiHKCI	CYCGRG	1 cut(s)	237
BsiSI	CCGG	9 cut(s)	52, 332, 614, 943, 1011, 1052, 1057, 1102, 1197
BslI	CCNNNNNNNGG	4 cut(s)	534, 942, 1126, 1196
BsmAI	GTCTC	4 cut(s)	214, 703, 1047, 1205
BsmBI	CGTCTC	1 cut(s)	1047
Bso31I	GGTCTC	1 cut(s)	1205
BsoBI	CYCGRG	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	836
Bsp13I	TCCGGA	1 cut(s)	1051
Bsp143I	GATC	9 cut(s)	133, 466, 505, 909, 993, 1030, 1158, 1178, 1216
Bsp1720I	GCTNAGC	1 cut(s)	402
Bsp19I	CCATGG	1 cut(s)	56
BspEI	TCCGGA	1 cut(s)	1051
BspFNI	CGCG	3 cut(s)	1021, 1258, 1274
BspLI	GGNNCC	4 cut(s)	277, 887, 1061, 1131
BspPI	GGATC	3 cut(s)	474, 988, 1173
BspTI	CTTAAG	1 cut(s)	485
BspTNI	GGTCTC	1 cut(s)	1205
BsrBI	CCGCTC	1 cut(s)	933
BsrFI	RCCGGY	4 cut(s)	942, 1010, 1056, 1101
BsrI	ACTGG	2 cut(s)	521, 971
BssAI	RCCGGY	4 cut(s)	942, 1010, 1056, 1101
BssECI	CCNNGG	2 cut(s)	56, 170
BssMI	GATC	9 cut(s)	133, 466, 505, 909, 993, 1030, 1158, 1178, 1216
BssT1I	CCWWGG	2 cut(s)	56, 170
Bst4CI	ACNGT	1 cut(s)	609
Bst6I	CTCTTC	2 cut(s)	38, 315
BstAFI	CTTAAG	1 cut(s)	485
BstC8I	GCNNGC	7 cut(s)	304, 408, 667, 749, 1076, 1172, 1231
BstDEI	CTNAG	3 cut(s)	402, 755, 782
BstDSI	CCRYGG	1 cut(s)	56
BstF5I	GGATG	5 cut(s)	442, 505, 637, 1206, 1276
BstFNI	CGCG	3 cut(s)	1021, 1258, 1274
BstH2I	RGCGCY	3 cut(s)	568, 965, 990
BstHHI	GCGC	5 cut(s)	567, 964, 989, 1176, 1276
BstKTI	GATC	9 cut(s)	136, 469, 508, 912, 996, 1033, 1161, 1181, 1219
BstMAI	GTCTC	4 cut(s)	214, 703, 1047, 1205
BstMBI	GATC	9 cut(s)	133, 466, 505, 909, 993, 1030, 1158, 1178, 1216
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	6 cut(s)	25, 407, 1171, 1239, 1264, 1273
BstNSI	RCATGY	2 cut(s)	601, 811
BstSCI	CCNGG	2 cut(s)	330, 1195
BstUI	CGCG	3 cut(s)	1021, 1258, 1274
BstV1I	GCAGC	7 cut(s)	167, 664, 763, 929, 958, 1198, 1262
BstX2I	RGATCY	2 cut(s)	505, 1178
BstYI	RGATCY	2 cut(s)	505, 1178
BtgI	CCRYGG	1 cut(s)	56
BtgZI	GCGATG	2 cut(s)	321, 750
BtsCI	GGATG	5 cut(s)	442, 505, 637, 1206, 1276
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	7 cut(s)	304, 408, 667, 749, 1076, 1172, 1231
CfoI	GCGC	5 cut(s)	567, 964, 989, 1176, 1276
Cfr10I	RCCGGY	4 cut(s)	942, 1010, 1056, 1101
Cfr13I	GGNCC	5 cut(s)	275, 1054, 1059, 1089, 1129
CpoI	CGGWCCG	1 cut(s)	1054
CseI	GACGC	1 cut(s)	1247
Csp6I	GTAC	2 cut(s)	234, 490
CspI	CGGWCCG	1 cut(s)	1054
CviAII	CATG	5 cut(s)	29, 57, 413, 598, 808
CviQI	GTAC	2 cut(s)	234, 490
DdeI	CTNAG	3 cut(s)	402, 755, 782
DpnI	GATC	9 cut(s)	135, 468, 507, 911, 995, 1032, 1160, 1180, 1218
DpnII	GATC	9 cut(s)	133, 466, 505, 909, 993, 1030, 1158, 1178, 1216
EaeI	YGGCCR	3 cut(s)	53, 1012, 1103
Eam1104I	CTCTTC	2 cut(s)	38, 315
EarI	CTCTTC	2 cut(s)	38, 315
Eco130I	CCWWGG	2 cut(s)	56, 170
Eco147I	AGGCCT	1 cut(s)	787
Eco31I	GGTCTC	1 cut(s)	1205
Eco47I	GGWCC	1 cut(s)	1054
Eco57I	CTGAAG	1 cut(s)	888
Eco88I	CYCGRG	1 cut(s)	237
EcoRI	GAATTC	1 cut(s)	721
EcoT14I	CCWWGG	2 cut(s)	56, 170
ErhI	CCWWGG	2 cut(s)	56, 170
Esp3I	CGTCTC	1 cut(s)	1047
FaeI	CATG	5 cut(s)	32, 60, 416, 601, 811
FatI	CATG	5 cut(s)	28, 56, 412, 597, 807
FauI	CCCGC	3 cut(s)	160, 1175, 1247
FbaI	TGATCA	1 cut(s)	909
Fnu4HI	GCNGC	9 cut(s)	181, 678, 752, 771, 774, 918, 947, 1187, 1251
FokI	GGATG	5 cut(s)	449, 512, 644, 1193, 1263
Fsp4HI	GCNGC	9 cut(s)	181, 678, 752, 771, 774, 918, 947, 1187, 1251
FspBI	CTAG	6 cut(s)	20, 111, 375, 966, 984, 1226
FspI	TGCGCA	1 cut(s)	1175
GlaI	GCGC	5 cut(s)	566, 963, 988, 1175, 1275
GluI	GCNGC	9 cut(s)	181, 678, 752, 771, 774, 918, 947, 1187, 1251
GsaI	CCCAGC	5 cut(s)	187, 925, 1066, 1142, 1186
GsuI	CTGGAG	5 cut(s)	266, 538, 723, 1197, 1266
HaeII	RGCGCY	3 cut(s)	568, 965, 990
HapII	CCGG	9 cut(s)	52, 332, 614, 943, 1011, 1052, 1057, 1102, 1197
HgaI	GACGC	1 cut(s)	1247
HhaI	GCGC	5 cut(s)	567, 964, 989, 1176, 1276
Hin1II	CATG	5 cut(s)	32, 60, 416, 601, 811
Hin6I	GCGC	5 cut(s)	565, 962, 987, 1174, 1274
HinP1I	GCGC	5 cut(s)	565, 962, 987, 1174, 1274
HincII	GTYRAC	1 cut(s)	1002
HindII	GTYRAC	1 cut(s)	1002
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	5 cut(s)	48, 116, 148, 166, 696
HpaII	CCGG	9 cut(s)	52, 332, 614, 943, 1011, 1052, 1057, 1102, 1197
HphI	GGTGA	3 cut(s)	569, 1086, 1091
Hpy166II	GTNNAC	1 cut(s)	1002
Hpy188I	TCNGA	4 cut(s)	39, 319, 727, 868
Hpy188III	TCNNGA	4 cut(s)	702, 1052, 1202, 1214
Hpy8I	GTNNAC	1 cut(s)	1002
Hpy99I	CGWCG	1 cut(s)	1089
HpyAV	CCTTC	3 cut(s)	1047, 1130, 1164
HpyCH4III	ACNGT	1 cut(s)	609
HpyCH4V	TGCA	3 cut(s)	440, 680, 811
HpyF10VI	GCNNNNNNNGC	6 cut(s)	25, 407, 1171, 1239, 1264, 1273
HpyF3I	CTNAG	3 cut(s)	402, 755, 782
Hsp92II	CATG	5 cut(s)	32, 60, 416, 601, 811
HspAI	GCGC	5 cut(s)	565, 962, 987, 1174, 1274
Kpn2I	TCCGGA	1 cut(s)	1051
Ksp22I	TGATCA	1 cut(s)	909
Kzo9I	GATC	9 cut(s)	133, 466, 505, 909, 993, 1030, 1158, 1178, 1216
LmnI	GCTCC	7 cut(s)	16, 519, 794, 891, 899, 938, 1258
Lsp1109I	GCAGC	7 cut(s)	167, 664, 763, 929, 958, 1198, 1262
LweI	GCATC	2 cut(s)	427, 1285
MaeI	CTAG	6 cut(s)	20, 111, 375, 966, 984, 1226
MaeIII	GTNAC	4 cut(s)	447, 512, 609, 1259
MalI	GATC	9 cut(s)	135, 468, 507, 911, 995, 1032, 1160, 1180, 1218
MbiI	CCGCTC	1 cut(s)	933
MboI	GATC	9 cut(s)	133, 466, 505, 909, 993, 1030, 1158, 1178, 1216
MboII	GAAGA	3 cut(s)	52, 55, 332
MflI	RGATCY	2 cut(s)	505, 1178
MhlI	GDGCHC	1 cut(s)	836
MluCI	AATT	4 cut(s)	101, 577, 721, 741
MlyI	GAGTC	1 cut(s)	705
MroI	TCCGGA	1 cut(s)	1051
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	4 cut(s)	84, 486, 543, 731
MspA1I	CMGCKG	2 cut(s)	155, 776
MspCI	CTTAAG	1 cut(s)	485
MspI	CCGG	9 cut(s)	52, 332, 614, 943, 1011, 1052, 1057, 1102, 1197
MspR9I	CCNGG	2 cut(s)	332, 1197
MvnI	CGCG	3 cut(s)	1021, 1258, 1274
MwoI	GCNNNNNNNGC	6 cut(s)	25, 407, 1171, 1239, 1264, 1273
NciI	CCSGG	2 cut(s)	332, 1197
NcoI	CCATGG	1 cut(s)	56
NdeII	GATC	9 cut(s)	133, 466, 505, 909, 993, 1030, 1158, 1178, 1216
NlaIII	CATG	5 cut(s)	32, 60, 416, 601, 811
NlaIV	GGNNCC	4 cut(s)	277, 887, 1061, 1131
NmuCI	GTSAC	2 cut(s)	512, 1259
NsbI	TGCGCA	1 cut(s)	1175
NspI	RCATGY	2 cut(s)	601, 811
PaeR7I	CTCGAG	1 cut(s)	237
PceI	AGGCCT	1 cut(s)	787
PciI	ACATGT	1 cut(s)	597
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	4 cut(s)	48, 116, 148, 166
PkrI	GCNGC	9 cut(s)	182, 679, 753, 772, 775, 919, 948, 1188, 1252
PleI	GAGTC	1 cut(s)	704
PpsI	GAGTC	1 cut(s)	704
PscI	ACATGT	1 cut(s)	597
PspFI	CCCAGC	5 cut(s)	183, 921, 1062, 1138, 1182
PspN4I	GGNNCC	4 cut(s)	277, 887, 1061, 1131
PspPI	GGNCC	5 cut(s)	275, 1054, 1059, 1089, 1129
PspXI	VCTCGAGB	1 cut(s)	237
PsuI	RGATCY	2 cut(s)	505, 1178
RsaI	GTAC	2 cut(s)	235, 491
RsaNI	GTAC	2 cut(s)	234, 490
Rsr2I	CGGWCCG	1 cut(s)	1054
RsrII	CGGWCCG	1 cut(s)	1054
SaqAI	TTAA	4 cut(s)	84, 486, 543, 731
SatI	GCNGC	9 cut(s)	181, 678, 752, 771, 774, 918, 947, 1187, 1251
Sau3AI	GATC	9 cut(s)	133, 466, 505, 909, 993, 1030, 1158, 1178, 1216
Sau96I	GGNCC	5 cut(s)	275, 1054, 1059, 1089, 1129
SchI	GAGTC	1 cut(s)	705
ScrFI	CCNGG	2 cut(s)	332, 1197
SduI	GDGCHC	1 cut(s)	836
SfaNI	GCATC	2 cut(s)	427, 1285
Sfr274I	CTCGAG	1 cut(s)	237
SinI	GGWCC	1 cut(s)	1054
SlaI	CTCGAG	1 cut(s)	237
SmlI	CTYRAG	3 cut(s)	237, 485, 835
SmoI	CTYRAG	3 cut(s)	237, 485, 835
Sse9I	AATT	4 cut(s)	101, 577, 721, 741
SseBI	AGGCCT	1 cut(s)	787
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	6 cut(s)	20, 111, 375, 966, 984, 1226
StuI	AGGCCT	1 cut(s)	787
StyD4I	CCNGG	2 cut(s)	330, 1195
StyI	CCWWGG	2 cut(s)	56, 170
TaaI	ACNGT	1 cut(s)	609
TaqI	TCGA	7 cut(s)	238, 294, 349, 992, 1084, 1157, 1203
TasI	AATT	4 cut(s)	101, 577, 721, 741
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	2 cut(s)	773, 776
TfiI	GAWTC	4 cut(s)	48, 116, 148, 166
Tru1I	TTAA	4 cut(s)	84, 486, 543, 731
Tru9I	TTAA	4 cut(s)	84, 486, 543, 731
TscAI	CASTG	1 cut(s)	521
TseFI	GTSAC	2 cut(s)	512, 1259
TseI	GCWGC	7 cut(s)	180, 677, 751, 917, 946, 1186, 1250
Tsp45I	GTSAC	2 cut(s)	512, 1259
TspDTI	ATGAA	2 cut(s)	618, 753
TspGWI	ACGGA	2 cut(s)	500, 829
TspRI	CASTG	1 cut(s)	521
Vha464I	CTTAAG	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	1054
XapI	RAATTY	1 cut(s)	721
XceI	RCATGY	2 cut(s)	601, 811
XhoI	CTCGAG	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	6 cut(s)	20, 111, 375, 966, 984, 1226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.