Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007660

Physical Location & Seq

Genomic Coordinates Reverse (-)

78122971 .. 78123498

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00139780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCAACGACATCGCCTAGACTTTTCAGAGCCACCGCCATCTTCCTCTCCCGTAATCGGCTTCGCCGCTTCCCTCTCGACATTGAATCCCACGGCCGGTCTCATGGCCTCGCAGCCTTCTTCCTAAACGTCGATCTCGTCATCCAAGACCGCCGCTTCTTCTTCAATTTAGTCAAGCAAAACCCCCAATACGAAACCCTATCGTCCTTCCTCTACGGCGAGTTGATGGGCGACGCGATCCGTCTTCCGATCCACTTCACCGATCCCGAAGCCTTTGACGCGCTCAAGCTAGTCGACGAGGGCGAAGACGGCGAGCTTGGAGTGGATGACTTCCTTTTGCTCCGAACATTAGAAATTGGCGACGAAGAAGATGGGTTTGTTGCATCTTCAAGGTGTGTTTGTGGGTCGATGATGAAGAAGAGGAAGAGGGCGGGGTTTGGATTCGACCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

150

Amino Acids

17.04

Weight (kDa)

5.38

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11090
fragaria_vesca	FvH4_3g04590
malus_domestica	MD10G1300100.v1.1
prunus_persica	Prupe.4G040700_v2.0.a1
pyrus_communis	pycom10g25280
rosa_chinensis	RchiOBHm_Chr1g0341431 RchiOBHm_Chr2g0096241 RchiOBHm_Chr2g0170991 RchiOBHm_Chr5g0007531 RchiOBHm_Chr5g0049361
rosa_laevigata	RLG00000013401 RLG00000031465
rosa_multiflora	Rmu_co8522595.1_g000002 Rmu_sc0009463.1_g000005 Rmu_sc0009463.1_g000007 Rmu_ssc0000182.1_g000012
rosa_roxburghii	Rroxscaffold_1G00067270 Rroxscaffold_2G00139780
rosa_rugosa	Rorug04G0428100.1
rosa_samantha	Rh4CG004300 Rh5BG053500 Rh5CG063300 Rh5DG052500
rosa_wichuraiana	Rw5G005430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	2 cut(s)	236, 281
AciI	CCGC	5 cut(s)	36, 67, 151, 154, 431
AclWI	GGATC	3 cut(s)	232, 244, 257
AcoI	YGGCCR	1 cut(s)	94
AfiI	CCNNNNNNNGG	2 cut(s)	57, 96
AgsI	TTSAA	3 cut(s)	86, 166, 390
AluBI	AGCT	2 cut(s)	289, 316
AluI	AGCT	2 cut(s)	289, 316
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	3 cut(s)	232, 244, 257
AoxI	GGCC	2 cut(s)	94, 106
ApeKI	GCWGC	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	250
BbsI	GAAGAC	2 cut(s)	236, 312
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	3 cut(s)	47, 220, 365
BceAI	ACGGC	3 cut(s)	109, 232, 325
BcgI	CGANNNNNNTGC	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	2 cut(s)	18, 290
BisI	GCNGC	3 cut(s)	67, 114, 154
BlsI	GCNGC	3 cut(s)	68, 115, 155
BmsI	GCATC	1 cut(s)	392
BpiI	GAAGAC	2 cut(s)	236, 312
BpuEI	CTTGAG	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 96
Bse118I	RCCGGY	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	2 cut(s)	141, 331
BseLI	CCNNNNNNNGG	2 cut(s)	57, 96
BseX3I	CGGCCG	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	125
Bsh1236I	CGCG	2 cut(s)	236, 281
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	2 cut(s)	96, 108
BsiEI	CGRYCG	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	97
BslI	CCNNNNNNNGG	2 cut(s)	57, 96
BsmAI	GTCTC	1 cut(s)	105
BsnI	GGCC	2 cut(s)	96, 108
Bso31I	GGTCTC	1 cut(s)	105
Bsp143I	GATC	4 cut(s)	133, 237, 249, 262
BspACI	CCGC	5 cut(s)	36, 67, 151, 154, 431
BspANI	GGCC	2 cut(s)	96, 108
BspFNI	CGCG	2 cut(s)	236, 281
BspPI	GGATC	3 cut(s)	232, 244, 257
BspTNI	GGTCTC	1 cut(s)	105
BsrFI	RCCGGY	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	4 cut(s)	133, 237, 249, 262
Bst6I	CTCTTC	2 cut(s)	413, 419
BstC8I	GCNNGC	1 cut(s)	314
BstDSI	CCRYGG	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	141, 331
BstFNI	CGCG	2 cut(s)	236, 281
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	4 cut(s)	136, 240, 252, 265
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	4 cut(s)	133, 237, 249, 262
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 309
BstUI	CGCG	2 cut(s)	236, 281
BstV1I	GCAGC	1 cut(s)	125
BstV2I	GAAGAC	2 cut(s)	236, 312
BstZI	CGGCCG	1 cut(s)	94
BsuRI	GGCC	2 cut(s)	96, 108
BtgI	CCRYGG	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	141, 331
Cac8I	GCNNGC	1 cut(s)	314
CfoI	GCGC	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	96
CseI	GACGC	2 cut(s)	242, 287
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	8 cut(s)	32, 61, 96, 108, 116, 272, 289, 316
CviKI_1	RGCY	8 cut(s)	32, 61, 96, 108, 116, 272, 289, 316
DpnI	GATC	4 cut(s)	135, 239, 251, 264
DpnII	GATC	4 cut(s)	133, 237, 249, 262
EaeI	YGGCCR	1 cut(s)	94
EagI	CGGCCG	1 cut(s)	94
Eam1104I	CTCTTC	2 cut(s)	413, 419
EarI	CTCTTC	2 cut(s)	413, 419
EclXI	CGGCCG	1 cut(s)	94
Eco31I	GGTCTC	1 cut(s)	105
Eco52I	CGGCCG	1 cut(s)	94
FaeI	CATG	1 cut(s)	107
FaiI	YATR	1 cut(s)	105
FatI	CATG	1 cut(s)	103
FauI	CCCGC	1 cut(s)	424
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	67, 114, 154
FokI	GGATG	2 cut(s)	128, 338
Fsp4HI	GCNGC	3 cut(s)	67, 114, 154
FspBI	CTAG	2 cut(s)	18, 290
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	3 cut(s)	67, 114, 154
HaeIII	GGCC	2 cut(s)	96, 108
HapII	CCGG	1 cut(s)	97
HgaI	GACGC	2 cut(s)	242, 287
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	86, 441
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	3 cut(s)	29, 249, 344
Hpy188III	TCNNGA	2 cut(s)	77, 266
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	4 cut(s)	134, 236, 299, 365
HpyAV	CCTTC	2 cut(s)	127, 217
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	1 cut(s)	383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 309
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	4 cut(s)	133, 237, 249, 262
LmnI	GCTCC	1 cut(s)	345
LpnPI	CCDG	1 cut(s)	110
Lsp1109I	GCAGC	1 cut(s)	125
LweI	GCATC	1 cut(s)	392
MaeI	CTAG	2 cut(s)	18, 290
MaeII	ACGT	1 cut(s)	129
MalI	GATC	4 cut(s)	135, 239, 251, 264
MboI	GATC	4 cut(s)	133, 237, 249, 262
MluCI	AATT	2 cut(s)	166, 354
MnlI	CCTC	7 cut(s)	56, 84, 119, 221, 292, 414, 420
MspI	CCGG	1 cut(s)	97
MvnI	CGCG	2 cut(s)	236, 281
MwoI	GCNNNNNNNGC	2 cut(s)	278, 309
NdeII	GATC	4 cut(s)	133, 237, 249, 262
NlaIII	CATG	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 300
PfeI	GAWTC	2 cut(s)	86, 441
PkrI	GCNGC	3 cut(s)	68, 115, 155
SalI	GTCGAC	1 cut(s)	293
SatI	GCNGC	3 cut(s)	67, 114, 154
Sau3AI	GATC	4 cut(s)	133, 237, 249, 262
SetI	ASST	4 cut(s)	132, 291, 318, 395
SfaNI	GCATC	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	2 cut(s)	166, 354
SsiI	CCGC	5 cut(s)	36, 67, 151, 154, 431
SspMI	CTAG	2 cut(s)	18, 290
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	5 cut(s)	78, 132, 294, 407, 444
TasI	AATT	2 cut(s)	166, 354
TauI	GCSGC	2 cut(s)	69, 156
TfiI	GAWTC	2 cut(s)	86, 441
TseI	GCWGC	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	428
TspGWI	ACGGA	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	2 cut(s)	18, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.