Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003204

Physical Location & Seq

Genomic Coordinates Forward (+)

3768521 .. 3770102

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G11250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAACGATTTATTCTCTAATTCATTCAAGAAGAACCAGGCTCAACTGGGGGATGTTGAGGCAGGTCAAGAAACGATGAACCTCGATAAATTCTTCGAGGATGTCGAGAATGTGAAGGACGACATGAAAGGAGTCGAGGCTCTTTATAAGAAGCTTCAAGACTCAAACGAGGAGTGCAAGACGGTTCACAATGCCAAGAAGGTTAAAGAGCTACGAGCTAAGATGGATGGAGACGTAGCAATGGTCCTTAAGAGGGTTAAAATCATCAAGCAGAAGCTCGAAGCCTTAGAGAAAGCGAATGCTAATAGCCGTAATGTCCCTGGTTGTGGGCCTGGTTCGTCTACGGATAGGACTCGATCTTCTGTGGTTAGCGGTCTCGGGAAGAAGCTCAAAGACTTGATGGATAGTTTTCAAGGTCTACGTGCTCGTATGAACAATGAGTATAAGGAAACCGTAGAGCGCAGGTATTTCACAATAACAGGAGAAAAAGCAGACGAGCAAACAATCGATAACTTGATAGCGAGCGGTGAGAGCGAGAATTTTCTCCAAAAAGCGATTCAAGAGCAAGGAAGAGGTCAAATCCTAGACACGATATCTGAGATCCAGGAGAGACATGATGCAGTGAAGGAGATAGAGAAGAATCTACTGGAGCTGCACCAGGTTTTCTTGGACATGGCAGCTCTAGTAGAAGCGCAAGGGCAACAATTAAACAACATAGAGAGCCATGTGGCGAAAGCGAGCTCGTTTGTGAGAAGAGGGACTGATCAGCTCCAAGATGCGAGGGAATACCAAAAGAGCTCGAGGAAATGGACTTGTTACGCCATCATCCTCTTCATCGTCATCTTTATCCTCCTTCTCATTCCCCTTCTACCTCACATAATGCTCATGTTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000149 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016050 GO:0016192 GO:0022406 GO:0022414 GO:0030133 GO:0030154 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032940 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044706 GO:0046903 GO:0048278 GO:0048284 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051704 GO:0060560 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097708 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

298

Amino Acids

33.83

Weight (kDa)

6.56

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	27 - 186	4.4e-51	Syntaxin
SNARE	PF05739	235 - 286	1.9e-17	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11250 AT1G61290 AT1G61290 AT4G03330
fragaria_vesca	FvH4_3g04130 FvH4_6g44820
malus_domestica	MD05G1324600.v1.1 MD10G1302400.v1.1 MD17G1082900.v1.1
prunus_persica	Prupe.3G232300_v2.0.a1 Prupe.4G036000_v2.0.a1
pyrus_communis	pycom05g29880 pycom10g25490
rosa_chinensis	RchiOBHm_Chr2g0162001 RchiOBHm_Chr5g0006581
rosa_laevigata	RLG00000021314 RLG00000031401
rosa_multiflora	Rmu_co8449309.1_g000002 Rmu_co8484739.1_g000001 Rmu_sc0005741.1_g000004 Rmu_sc0008428.1_g000004 Rmu_sc0011154.1_g000007 Rmu_sc0038528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069460 Rroxscaffold_2G00088410
rosa_rugosa	Rorug02G0493900 Rorug04G0422800
rosa_samantha	Rh2AG559800 Rh2BG573200 Rh2CG543400 Rh2DG583000 Rh5AG049900 Rh5BG049200 Rh5CG057600 Rh5DG048600
rosa_wichuraiana	Rw2G046330 Rw5G005000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	147
Acc36I	ACCTGC	2 cut(s)	53, 453
AccBSI	CCGCTC	1 cut(s)	525
AccI	GTMKAC	2 cut(s)	341, 418
AciI	CCGC	2 cut(s)	372, 525
AclWI	GGATC	1 cut(s)	595
AcsI	RAATTY	2 cut(s)	89, 538
AfiI	CCNNNNNNNGG	2 cut(s)	253, 326
AflII	CTTAAG	1 cut(s)	248
AgsI	TTSAA	5 cut(s)	28, 158, 413, 560, 892
AjnI	CCWGG	5 cut(s)	36, 319, 331, 603, 657
AjuI	GAANNNNNNNTTGG	2 cut(s)	540, 572
Alw21I	GWGCWC	3 cut(s)	427, 743, 800
Alw26I	GTCTC	3 cut(s)	225, 380, 604
AlwI	GGATC	1 cut(s)	595
Ama87I	CYCGRG	2 cut(s)	377, 799
AoxI	GGCC	1 cut(s)	329
ApeKI	GCWGC	2 cut(s)	652, 677
ApoI	RAATTY	2 cut(s)	89, 538
AspLEI	GCGC	2 cut(s)	462, 694
AspS9I	GGNCC	2 cut(s)	244, 329
AsuHPI	GGTGA	1 cut(s)	539
AvaI	CYCGRG	2 cut(s)	377, 799
AvaII	GGWCC	1 cut(s)	244
BanII	GRGCYC	2 cut(s)	743, 800
Bbv12I	GWGCWC	3 cut(s)	427, 743, 800
BbvI	GCAGC	2 cut(s)	639, 689
BccI	CCATC	4 cut(s)	217, 221, 394, 830
BceAI	ACGGC	1 cut(s)	294
BciT130I	CCWGG	5 cut(s)	38, 321, 333, 605, 659
BclI	TGATCA	1 cut(s)	763
BcoDI	GTCTC	3 cut(s)	225, 380, 604
BfaI	CTAG	2 cut(s)	584, 683
BfrI	CTTAAG	1 cut(s)	248
BfuAI	ACCTGC	2 cut(s)	53, 453
BisI	GCNGC	2 cut(s)	653, 678
BlsI	GCNGC	2 cut(s)	654, 679
Bme1390I	CCNGG	5 cut(s)	38, 321, 333, 605, 659
Bme18I	GGWCC	1 cut(s)	244
BmeT110I	CYCGRG	2 cut(s)	377, 799
BmgT120I	GGNCC	2 cut(s)	244, 329
BmrFI	CCNGG	5 cut(s)	38, 321, 333, 605, 659
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	2 cut(s)	607, 766
BmuI	ACTGGG	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	668
Bsa29I	ATCGAT	1 cut(s)	507
BsaAI	YACGTR	1 cut(s)	422
BsaI	GGTCTC	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 326
Bse1I	ACTGG	2 cut(s)	51, 651
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	5 cut(s)	38, 321, 333, 605, 659
BseCI	ATCGAT	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	4 cut(s)	58, 106, 232, 825
BseLI	CCNNNNNNNGG	2 cut(s)	253, 326
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	588
BseNI	ACTGG	2 cut(s)	51, 651
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	2 cut(s)	639, 689
BsgI	GTGCAG	1 cut(s)	638
BshFI	GGCC	1 cut(s)	331
BshVI	ATCGAT	1 cut(s)	507
BsiHKAI	GWGCWC	3 cut(s)	427, 743, 800
BsiHKCI	CYCGRG	2 cut(s)	377, 799
BslFI	GGGAC	2 cut(s)	302, 772
BslI	CCNNNNNNNGG	2 cut(s)	253, 326
BsmAI	GTCTC	3 cut(s)	225, 380, 604
BsmBI	CGTCTC	1 cut(s)	225
BsmFI	GGGAC	2 cut(s)	302, 772
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	331
Bso31I	GGTCTC	1 cut(s)	380
BsoBI	CYCGRG	2 cut(s)	377, 799
Bsp1286I	GDGCHC	3 cut(s)	427, 743, 800
Bsp143I	GATC	3 cut(s)	356, 600, 763
BspACI	CCGC	2 cut(s)	372, 525
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	1 cut(s)	589
BspDI	ATCGAT	1 cut(s)	507
BspMI	ACCTGC	2 cut(s)	53, 453
BspPI	GGATC	1 cut(s)	595
BspTI	CTTAAG	1 cut(s)	248
BspTNI	GGTCTC	1 cut(s)	380
BsrBI	CCGCTC	1 cut(s)	525
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	51, 651
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	3 cut(s)	356, 600, 763
Bst2UI	CCWGG	5 cut(s)	38, 321, 333, 605, 659
Bst4CI	ACNGT	2 cut(s)	184, 454
Bst6I	CTCTTC	3 cut(s)	565, 748, 836
BstAFI	CTTAAG	1 cut(s)	248
BstBAI	YACGTR	1 cut(s)	422
BstC8I	GCNNGC	2 cut(s)	523, 739
BstDEI	CTNAG	3 cut(s)	219, 286, 597
BstF5I	GGATG	4 cut(s)	58, 106, 232, 825
BstHHI	GCGC	2 cut(s)	462, 694
BstKTI	GATC	3 cut(s)	359, 603, 766
BstMAI	GTCTC	3 cut(s)	225, 380, 604
BstMBI	GATC	3 cut(s)	356, 600, 763
BstMWI	GCNNNNNNNGC	1 cut(s)	531
BstNI	CCWGG	5 cut(s)	38, 321, 333, 605, 659
BstSCI	CCNGG	5 cut(s)	36, 319, 331, 603, 657
BstV1I	GCAGC	2 cut(s)	639, 689
BstX2I	RGATCY	1 cut(s)	600
BstYI	RGATCY	1 cut(s)	600
Bsu15I	ATCGAT	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	331
BsuTUI	ATCGAT	1 cut(s)	507
BtsCI	GGATG	4 cut(s)	58, 106, 232, 825
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	1 cut(s)	627
BveI	ACCTGC	2 cut(s)	53, 453
Cac8I	GCNNGC	2 cut(s)	523, 739
CfoI	GCGC	2 cut(s)	462, 694
Cfr13I	GGNCC	2 cut(s)	244, 329
ClaI	ATCGAT	1 cut(s)	507
CsiI	ACCWGGT	1 cut(s)	657
CviAII	CATG	5 cut(s)	124, 614, 673, 725, 886
DdeI	CTNAG	3 cut(s)	219, 286, 597
DpnI	GATC	3 cut(s)	358, 602, 765
DpnII	GATC	3 cut(s)	356, 600, 763
Eam1104I	CTCTTC	3 cut(s)	565, 748, 836
EarI	CTCTTC	3 cut(s)	565, 748, 836
Ecl136II	GAGCTC	2 cut(s)	741, 798
Eco24I	GRGCYC	2 cut(s)	743, 800
Eco31I	GGTCTC	1 cut(s)	380
Eco32I	GATATC	1 cut(s)	594
Eco47I	GGWCC	1 cut(s)	244
Eco53kI	GAGCTC	2 cut(s)	741, 798
Eco88I	CYCGRG	2 cut(s)	377, 799
EcoICRI	GAGCTC	2 cut(s)	741, 798
EcoRII	CCWGG	5 cut(s)	36, 319, 331, 603, 657
EcoRV	GATATC	1 cut(s)	594
EcoT38I	GRGCYC	2 cut(s)	743, 800
Esp3I	CGTCTC	1 cut(s)	225
FaeI	CATG	5 cut(s)	127, 617, 676, 728, 889
FaqI	GGGAC	2 cut(s)	302, 772
FatI	CATG	5 cut(s)	123, 613, 672, 724, 885
FbaI	TGATCA	1 cut(s)	763
FblI	GTMKAC	2 cut(s)	341, 418
Fnu4HI	GCNGC	2 cut(s)	653, 678
FokI	GGATG	4 cut(s)	65, 113, 239, 812
FriOI	GRGCYC	2 cut(s)	743, 800
Fsp4HI	GCNGC	2 cut(s)	653, 678
FspBI	CTAG	2 cut(s)	584, 683
GlaI	GCGC	2 cut(s)	461, 693
GluI	GCNGC	2 cut(s)	653, 678
GsuI	CTGGAG	1 cut(s)	668
HaeIII	GGCC	1 cut(s)	331
HhaI	GCGC	2 cut(s)	462, 694
Hin1II	CATG	5 cut(s)	127, 617, 676, 728, 889
Hin6I	GCGC	2 cut(s)	460, 692
HinP1I	GCGC	2 cut(s)	460, 692
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	5 cut(s)	132, 161, 352, 556, 640
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	3 cut(s)	187, 342, 419
Hpy188I	TCNGA	1 cut(s)	598
Hpy188III	TCNNGA	6 cut(s)	28, 68, 106, 158, 379, 560
Hpy8I	GTNNAC	3 cut(s)	187, 342, 419
HpyAV	CCTTC	5 cut(s)	109, 193, 619, 863, 875
HpyCH4III	ACNGT	2 cut(s)	184, 454
HpyCH4IV	ACGT	2 cut(s)	234, 421
HpyCH4V	TGCA	3 cut(s)	177, 620, 655
HpyF10VI	GCNNNNNNNGC	1 cut(s)	531
HpyF3I	CTNAG	3 cut(s)	219, 286, 597
HpySE526I	ACGT	2 cut(s)	234, 421
Hsp92II	CATG	5 cut(s)	127, 617, 676, 728, 889
HspAI	GCGC	2 cut(s)	460, 692
Ksp22I	TGATCA	1 cut(s)	763
Kzo9I	GATC	3 cut(s)	356, 600, 763
LmnI	GCTCC	2 cut(s)	649, 774
Lsp1109I	GCAGC	2 cut(s)	639, 689
LweI	GCATC	2 cut(s)	607, 766
MabI	ACCWGGT	1 cut(s)	657
MaeI	CTAG	2 cut(s)	584, 683
MaeII	ACGT	2 cut(s)	234, 421
MaeIII	GTNAC	1 cut(s)	815
MalI	GATC	3 cut(s)	358, 602, 765
MbiI	CCGCTC	1 cut(s)	525
MboI	GATC	3 cut(s)	356, 600, 763
MboII	GAAGA	8 cut(s)	43, 85, 351, 394, 582, 649, 765, 823
MflI	RGATCY	1 cut(s)	600
MhlI	GDGCHC	3 cut(s)	427, 743, 800
MluCI	AATT	4 cut(s)	19, 89, 538, 704
MlyI	GAGTC	3 cut(s)	141, 155, 346
MseI	TTAA	4 cut(s)	204, 249, 258, 707
MspCI	CTTAAG	1 cut(s)	248
MspR9I	CCNGG	5 cut(s)	38, 321, 333, 605, 659
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	5 cut(s)	38, 321, 333, 605, 659
MwoI	GCNNNNNNNGC	1 cut(s)	531
NdeII	GATC	3 cut(s)	356, 600, 763
NlaIII	CATG	5 cut(s)	127, 617, 676, 728, 889
PaeR7I	CTCGAG	1 cut(s)	799
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	1 cut(s)	304
PfeI	GAWTC	2 cut(s)	556, 640
PfoI	TCCNGGA	1 cut(s)	603
PkrI	GCNGC	2 cut(s)	654, 679
PleI	GAGTC	3 cut(s)	140, 155, 346
PpsI	GAGTC	3 cut(s)	140, 155, 346
Ppu21I	YACGTR	1 cut(s)	422
PsiI	TTATAA	1 cut(s)	147
Psp124BI	GAGCTC	2 cut(s)	743, 800
Psp6I	CCWGG	5 cut(s)	36, 319, 331, 603, 657
PspGI	CCWGG	5 cut(s)	36, 319, 331, 603, 657
PspPI	GGNCC	2 cut(s)	244, 329
PspXI	VCTCGAGB	1 cut(s)	799
PsuI	RGATCY	1 cut(s)	600
SacI	GAGCTC	2 cut(s)	743, 800
SaqAI	TTAA	4 cut(s)	204, 249, 258, 707
SatI	GCNGC	2 cut(s)	653, 678
Sau3AI	GATC	3 cut(s)	356, 600, 763
Sau96I	GGNCC	2 cut(s)	244, 329
SchI	GAGTC	3 cut(s)	141, 155, 346
ScrFI	CCNGG	5 cut(s)	38, 321, 333, 605, 659
SduI	GDGCHC	3 cut(s)	427, 743, 800
SexAI	ACCWGGT	1 cut(s)	657
SfaNI	GCATC	2 cut(s)	607, 766
Sfr274I	CTCGAG	1 cut(s)	799
SinI	GGWCC	1 cut(s)	244
SlaI	CTCGAG	1 cut(s)	799
SmlI	CTYRAG	2 cut(s)	248, 799
SmoI	CTYRAG	2 cut(s)	248, 799
Sse9I	AATT	4 cut(s)	19, 89, 538, 704
SsiI	CCGC	2 cut(s)	372, 525
SspMI	CTAG	2 cut(s)	584, 683
SstI	GAGCTC	2 cut(s)	743, 800
StyD4I	CCNGG	5 cut(s)	36, 319, 331, 603, 657
TaaI	ACNGT	2 cut(s)	184, 454
TaiI	ACGT	2 cut(s)	237, 424
TaqI	TCGA	8 cut(s)	84, 96, 105, 135, 279, 355, 507, 800
TasI	AATT	4 cut(s)	19, 89, 538, 704
TfiI	GAWTC	2 cut(s)	556, 640
Tru1I	TTAA	4 cut(s)	204, 249, 258, 707
Tru9I	TTAA	4 cut(s)	204, 249, 258, 707
TscAI	CASTG	1 cut(s)	627
TseI	GCWGC	2 cut(s)	652, 677
TspDTI	ATGAA	6 cut(s)	12, 17, 92, 140, 446, 823
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	1 cut(s)	627
Vha464I	CTTAAG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	244
XapI	RAATTY	2 cut(s)	89, 538
XhoI	CTCGAG	1 cut(s)	799
XmiI	GTMKAC	2 cut(s)	341, 418
XspI	CTAG	2 cut(s)	584, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.