Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003204

Physical Location & Seq

Genomic Coordinates Forward (+)

34494655 .. 34495566

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g44820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAACGATCTGTTTTCGAATAATTCATTCAAACGATACAAGGATCTTGAGCAGCAGGTTTACATCGATGACGTGCGCAGCGAGGCGTGGGGTGAGACTGTCAATCTTGATGGATACTTCAGGAAAATAGAGAATGTGAAGGAAGACATGGGAGCTGTGGAGAAGCTTTTCAAGCAGCTAGAGGAAGCAAATGAGGAGAGCAAACAAGTCCATGATGCCAAGTCCATGAAAGGGCTTCGCTCCAGGATGGACTCAGATGTTGAGAAAGTGTTGAAACTTGCCAAAGTCATCAAGGAAAAGCTGGAAGCACTTGAACTCTCAAATGCCGAACAGCGCAAACTCCCCGGCTGTGGATCTGGATCATCTTCTGATCGTACGAGAACTTCATTACTTAATGGTTTGACGAAAAAGCTTAAGGCCATGATGGATGATTTTCAAGGCCTAAGGGCCAAAATAGCCTCGGAATACAAAGAGACAGTTGGAAGGAGGTACTTCACAATAACAGGTGAGAAGGCCAACAATGAAATGATTGAGAATTTGATTGCTAGTGGAGAGGGTGAAACATTGGTTCAGAGGGCTATTCAGGAACAGGGTCGTGGTCAAATTTTGGACACAATTCAAGAAATCCAAGAGCGGCGCGATGCTGTGAAGGAGATTGAGCAGAGCCTCATTGAGCTGCACCAAGTGTTCCTAGACATGGCTGCATTGGTGGAGGCACAAGGGCAGCAGCTGAATGACATCGAGAGCCAAGTTGCACGCGCAAGCTCATTTGTTAGGAAAGGAACTGTGCAACTTGAGGAAGCTAAGCAGTACCAGAAGAGCAGCAGGAAGTGCATCTGCATTGGCATAGTTCTGGCCTTTTGTTTGGTTATCATTCTTCTTTTTCCTATTCTGATTCACTTCAAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

304

Amino Acids

34.39

Weight (kDa)

5.88

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	35 - 194	7.9e-48	Syntaxin
SNARE	PF05739	243 - 294	4e-14	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11250 AT1G61290 AT1G61290 AT4G03330
fragaria_vesca	FvH4_3g04130 FvH4_6g44820
malus_domestica	MD05G1324600.v1.1 MD10G1302400.v1.1 MD17G1082900.v1.1
prunus_persica	Prupe.3G232300_v2.0.a1 Prupe.4G036000_v2.0.a1
pyrus_communis	pycom05g29880 pycom10g25490
rosa_chinensis	RchiOBHm_Chr2g0162001 RchiOBHm_Chr5g0006581
rosa_laevigata	RLG00000021314 RLG00000031401
rosa_multiflora	Rmu_co8449309.1_g000002 Rmu_co8484739.1_g000001 Rmu_sc0005741.1_g000004 Rmu_sc0008428.1_g000004 Rmu_sc0011154.1_g000007 Rmu_sc0038528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069460 Rroxscaffold_2G00088410
rosa_rugosa	Rorug02G0493900 Rorug04G0422800
rosa_samantha	Rh2AG559800 Rh2BG573200 Rh2CG543400 Rh2DG583000 Rh5AG049900 Rh5BG049200 Rh5CG057600 Rh5DG048600
rosa_wichuraiana	Rw2G046330 Rw5G005000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	77
Acc36I	ACCTGC	1 cut(s)	46
AccBSI	CCGCTC	1 cut(s)	634
AccII	CGCG	2 cut(s)	639, 759
AciI	CCGC	1 cut(s)	634
AclWI	GGATC	3 cut(s)	51, 361, 367
AcsI	RAATTY	2 cut(s)	535, 603
AcuI	CTGAAG	1 cut(s)	103
AdeI	CACNNNGTG	1 cut(s)	685
AfaI	GTAC	3 cut(s)	376, 491, 812
AfiI	CCNNNNNNNGG	3 cut(s)	231, 350, 697
AflII	CTTAAG	1 cut(s)	413
AgsI	TTSAA	7 cut(s)	31, 172, 274, 314, 437, 620, 904
AjiI	CACGTC	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	242
AluBI	AGCT	9 cut(s)	155, 166, 178, 301, 412, 676, 730, 765, 803
AluI	AGCT	9 cut(s)	155, 166, 178, 301, 412, 676, 730, 765, 803
Alw26I	GTCTC	2 cut(s)	89, 467
AlwI	GGATC	3 cut(s)	51, 361, 367
AlwNI	CAGNNNCTG	1 cut(s)	730
AoxI	GGCC	5 cut(s)	417, 439, 447, 513, 855
ApeKI	GCWGC	8 cut(s)	52, 78, 175, 676, 701, 724, 727, 822
ApoI	RAATTY	2 cut(s)	535, 603
Asp700I	GAANNNNTTC	1 cut(s)	167
AspLEI	GCGC	4 cut(s)	78, 336, 639, 761
AspS9I	GGNCC	1 cut(s)	447
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	3 cut(s)	104, 518, 569
AsuII	TTCGAA	1 cut(s)	17
AxyI	CCTNAGG	1 cut(s)	443
BarI	GAAGNNNNNNTAC	2 cut(s)	367, 399
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	8 cut(s)	64, 90, 187, 663, 688, 736, 739, 834
BccI	CCATC	3 cut(s)	104, 241, 418
BciT130I	CCWGG	1 cut(s)	244
BciVI	GTATCC	1 cut(s)	107
BcnI	CCSGG	1 cut(s)	345
BcoDI	GTCTC	2 cut(s)	89, 467
BfaI	CTAG	3 cut(s)	179, 546, 692
BfrI	CTTAAG	1 cut(s)	413
BfuAI	ACCTGC	1 cut(s)	46
BfuI	GTATCC	1 cut(s)	107
BisI	GCNGC	9 cut(s)	53, 79, 176, 635, 677, 702, 725, 728, 823
BlpI	GCTNAGC	1 cut(s)	804
BlsI	GCNGC	9 cut(s)	54, 80, 177, 636, 678, 703, 726, 729, 824
Bme1390I	CCNGG	2 cut(s)	244, 345
BmgBI	CACGTC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	447
BmrFI	CCNGG	2 cut(s)	244, 345
BmsI	GCATC	3 cut(s)	205, 631, 843
BpiI	GAAGAC	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	226
Bpu1102I	GCTNAGC	1 cut(s)	804
Bpu14I	TTCGAA	1 cut(s)	17
BpuEI	CTTGAG	2 cut(s)	68, 815
BpuMI	CCSGG	1 cut(s)	345
Bsa29I	ATCGAT	1 cut(s)	66
BsaBI	GATNNNNATC	1 cut(s)	358
BsaJI	CCNNGG	2 cut(s)	343, 459
Bsc4I	CCNNNNNNNGG	3 cut(s)	231, 350, 697
Bse21I	CCTNAGG	1 cut(s)	443
Bse8I	GATNNNNATC	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	244
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	343, 459
BseGI	GGATG	2 cut(s)	252, 433
BseJI	GATNNNNATC	1 cut(s)	358
BseLI	CCNNNNNNNGG	3 cut(s)	231, 350, 697
BseMII	CTCAG	1 cut(s)	267
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	8 cut(s)	64, 90, 187, 663, 688, 736, 739, 834
BsgI	GTGCAG	1 cut(s)	662
Bsh1236I	CGCG	2 cut(s)	639, 759
BshFI	GGCC	5 cut(s)	419, 441, 449, 515, 857
BshVI	ATCGAT	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	345
BsiWI	CGTACG	1 cut(s)	374
BslI	CCNNNNNNNGG	3 cut(s)	231, 350, 697
BsmAI	GTCTC	2 cut(s)	89, 467
BsnI	GGCC	5 cut(s)	419, 441, 449, 515, 857
Bsp119I	TTCGAA	1 cut(s)	17
Bsp143I	GATC	5 cut(s)	7, 43, 353, 359, 370
Bsp1720I	GCTNAGC	1 cut(s)	804
BspACI	CCGC	1 cut(s)	634
BspANI	GGCC	5 cut(s)	419, 441, 449, 515, 857
BspCNI	CTCAG	1 cut(s)	266
BspDI	ATCGAT	1 cut(s)	66
BspFNI	CGCG	2 cut(s)	639, 759
BspMI	ACCTGC	1 cut(s)	46
BspPI	GGATC	3 cut(s)	51, 361, 367
BspQI	GCTCTTC	1 cut(s)	812
BspT104I	TTCGAA	1 cut(s)	17
BspTI	CTTAAG	1 cut(s)	413
BsrBI	CCGCTC	1 cut(s)	634
BssECI	CCNNGG	2 cut(s)	343, 459
BssMI	GATC	5 cut(s)	7, 43, 353, 359, 370
Bst2UI	CCWGG	1 cut(s)	244
Bst4CI	ACNGT	3 cut(s)	100, 478, 787
Bst6I	CTCTTC	1 cut(s)	812
BstAFI	CTTAAG	1 cut(s)	413
BstAPI	GCANNNNNTGC	1 cut(s)	831
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	757, 763
BstDEI	CTNAG	3 cut(s)	253, 443, 804
BstF5I	GGATG	2 cut(s)	252, 433
BstFNI	CGCG	2 cut(s)	639, 759
BstHHI	GCGC	4 cut(s)	78, 336, 639, 761
BstKTI	GATC	5 cut(s)	10, 46, 356, 362, 373
BstMAI	GTCTC	2 cut(s)	89, 467
BstMBI	GATC	5 cut(s)	7, 43, 353, 359, 370
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 455, 831
BstNI	CCWGG	1 cut(s)	244
BstSCI	CCNGG	2 cut(s)	242, 343
BstUI	CGCG	2 cut(s)	639, 759
BstV1I	GCAGC	8 cut(s)	64, 90, 187, 663, 688, 736, 739, 834
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	2 cut(s)	43, 353
BstYI	RGATCY	2 cut(s)	43, 353
Bsu15I	ATCGAT	1 cut(s)	66
Bsu36I	CCTNAGG	1 cut(s)	443
BsuI	GTATCC	1 cut(s)	107
BsuRI	GGCC	5 cut(s)	419, 441, 449, 515, 857
BsuTUI	ATCGAT	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	654
BtrI	CACGTC	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	252, 433
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	757, 763
CaiI	CAGNNNCTG	1 cut(s)	730
CfoI	GCGC	4 cut(s)	78, 336, 639, 761
Cfr13I	GGNCC	1 cut(s)	447
ClaI	ATCGAT	1 cut(s)	66
Csp6I	GTAC	3 cut(s)	375, 490, 811
CviAII	CATG	5 cut(s)	148, 212, 226, 421, 697
CviQI	GTAC	3 cut(s)	375, 490, 811
DdeI	CTNAG	3 cut(s)	253, 443, 804
DpnI	GATC	5 cut(s)	9, 45, 355, 361, 372
DpnII	GATC	5 cut(s)	7, 43, 353, 359, 370
DraIII	CACNNNGTG	1 cut(s)	685
Eam1104I	CTCTTC	1 cut(s)	812
EarI	CTCTTC	1 cut(s)	812
Eco147I	AGGCCT	1 cut(s)	441
Eco57I	CTGAAG	1 cut(s)	103
Eco81I	CCTNAGG	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	242
FaeI	CATG	5 cut(s)	151, 215, 229, 424, 700
FaiI	YATR	6 cut(s)	149, 213, 227, 422, 698, 848
FatI	CATG	5 cut(s)	147, 211, 225, 420, 696
Fnu4HI	GCNGC	9 cut(s)	53, 79, 176, 635, 677, 702, 725, 728, 823
FokI	GGATG	2 cut(s)	259, 440
Fsp4HI	GCNGC	9 cut(s)	53, 79, 176, 635, 677, 702, 725, 728, 823
FspBI	CTAG	3 cut(s)	179, 546, 692
FspI	TGCGCA	1 cut(s)	77
GlaI	GCGC	4 cut(s)	77, 335, 638, 760
GluI	GCNGC	9 cut(s)	53, 79, 176, 635, 677, 702, 725, 728, 823
GsuI	CTGGAG	1 cut(s)	226
HaeIII	GGCC	5 cut(s)	419, 441, 449, 515, 857
HapII	CCGG	1 cut(s)	345
HhaI	GCGC	4 cut(s)	78, 336, 639, 761
Hin1II	CATG	5 cut(s)	151, 215, 229, 424, 700
Hin6I	GCGC	4 cut(s)	76, 334, 637, 759
HinP1I	GCGC	4 cut(s)	76, 334, 637, 759
HindIII	AAGCTT	2 cut(s)	164, 410
HinfI	GANTC	2 cut(s)	251, 895
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	3 cut(s)	104, 518, 569
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	5 cut(s)	256, 370, 463, 573, 894
Hpy188III	TCNNGA	8 cut(s)	47, 107, 121, 357, 584, 620, 742, 904
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	4 cut(s)	133, 477, 505, 643
HpyCH4III	ACNGT	3 cut(s)	100, 478, 787
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	6 cut(s)	679, 704, 755, 790, 834, 840
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 455, 831
HpyF3I	CTNAG	3 cut(s)	253, 443, 804
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	5 cut(s)	151, 215, 229, 424, 700
HspAI	GCGC	4 cut(s)	76, 334, 637, 759
Kzo9I	GATC	5 cut(s)	7, 43, 353, 359, 370
LguI	GCTCTTC	1 cut(s)	812
LmnI	GCTCC	2 cut(s)	152, 245
Lsp1109I	GCAGC	8 cut(s)	64, 90, 187, 663, 688, 736, 739, 834
LweI	GCATC	3 cut(s)	205, 631, 843
MaeI	CTAG	3 cut(s)	179, 546, 692
MaeII	ACGT	1 cut(s)	72
MalI	GATC	5 cut(s)	9, 45, 355, 361, 372
MbiI	CCGCTC	1 cut(s)	634
MboI	GATC	5 cut(s)	7, 43, 353, 359, 370
MboII	GAAGA	4 cut(s)	155, 357, 829, 869
MflI	RGATCY	2 cut(s)	43, 353
MluCI	AATT	4 cut(s)	22, 535, 603, 615
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	1 cut(s)	460
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	3 cut(s)	393, 414, 910
MspA1I	CMGCKG	1 cut(s)	730
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	2 cut(s)	244, 345
MvaI	CCWGG	1 cut(s)	244
MvnI	CGCG	2 cut(s)	639, 759
MwoI	GCNNNNNNNGC	3 cut(s)	172, 455, 831
NciI	CCSGG	1 cut(s)	345
NdeII	GATC	5 cut(s)	7, 43, 353, 359, 370
NlaIII	CATG	5 cut(s)	151, 215, 229, 424, 700
NsbI	TGCGCA	1 cut(s)	77
NspV	TTCGAA	1 cut(s)	17
PceI	AGGCCT	1 cut(s)	441
PciSI	GCTCTTC	1 cut(s)	812
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	895
Pfl23II	CGTACG	1 cut(s)	374
PfoI	TCCNGGA	1 cut(s)	242
PkrI	GCNGC	9 cut(s)	54, 80, 177, 636, 678, 703, 726, 729, 824
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	242
PspLI	CGTACG	1 cut(s)	374
PspPI	GGNCC	1 cut(s)	447
PstNI	CAGNNNCTG	1 cut(s)	730
PsuI	RGATCY	2 cut(s)	43, 353
PvuII	CAGCTG	1 cut(s)	730
RsaI	GTAC	3 cut(s)	376, 491, 812
RsaNI	GTAC	3 cut(s)	375, 490, 811
SapI	GCTCTTC	1 cut(s)	812
SaqAI	TTAA	3 cut(s)	393, 414, 910
SatI	GCNGC	9 cut(s)	53, 79, 176, 635, 677, 702, 725, 728, 823
Sau3AI	GATC	5 cut(s)	7, 43, 353, 359, 370
Sau96I	GGNCC	1 cut(s)	447
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	2 cut(s)	244, 345
SfaNI	GCATC	3 cut(s)	205, 631, 843
SfuI	TTCGAA	1 cut(s)	17
SmlI	CTYRAG	3 cut(s)	47, 413, 794
SmoI	CTYRAG	3 cut(s)	47, 413, 794
Sse9I	AATT	4 cut(s)	22, 535, 603, 615
SseBI	AGGCCT	1 cut(s)	441
SsiI	CCGC	1 cut(s)	634
SspMI	CTAG	3 cut(s)	179, 546, 692
StuI	AGGCCT	1 cut(s)	441
StyD4I	CCNGG	2 cut(s)	242, 343
TaaI	ACNGT	3 cut(s)	100, 478, 787
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	3 cut(s)	17, 66, 741
TasI	AATT	4 cut(s)	22, 535, 603, 615
TauI	GCSGC	1 cut(s)	637
TfiI	GAWTC	1 cut(s)	895
Tru1I	TTAA	3 cut(s)	393, 414, 910
Tru9I	TTAA	3 cut(s)	393, 414, 910
TseI	GCWGC	8 cut(s)	52, 78, 175, 676, 701, 724, 727, 822
TspDTI	ATGAA	5 cut(s)	15, 17, 242, 375, 537
Vha464I	CTTAAG	1 cut(s)	413
XapI	RAATTY	2 cut(s)	535, 603
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	3 cut(s)	179, 546, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.