Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003204

Physical Location & Seq

Genomic Coordinates Forward (+)

22604777 .. 22606385

Gene Structure 1609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G61290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAATGATTTATTCTCTAGTTCGTTCAAGAAGTACACGGACCTGAAGCAACAGGCCCAAATGGATGATATTGAGTCAGGTAAAGAGACGATGAACCTCGATAAGTTCTTTGAGGATGTCGAAAATGTCAAAGATAACATGAAAGGCGTAGAGACTCTTTACAAGAGTCTTCAGGATTCTAACGAAGAGTGCAAAACTGTACACAATGCCAAGAAGGTGAAGGAACTCCGAGCAAAGATGGATGGAGATGTCGCTCAGGTCCTCAAGAGAGTCAAGATGATCAAACAAAAGCTTGAGGCGCTTGAAAAAGCAAATGCTAATAGCCGTAATGTCTCTGGTTGTGGCCCTGGCTCTTCCACCGATAGGACCAGGACGTCTGTTGTTAGTGGACTCGGGAAAAAGCTTAAGGACTTGATGGATAGTTTTCAAGGTCTGCGTGCGCGGATGAACGCTGAGTATAAAGAAACCGTAGAGCGCAGATATTTCACGATAACCGGAGAACAGGCAGACGAACAGACGATTGAGAACTTGATTTCGAGTGGTGAAAGCGAGAATTTTCTTCAGAAAGCAATACAAGAACAAGGGAGAGGCCAAATATTAGACACTATATCAGAGATTCAAGAGAGACACGACGCGGTCAAAGAGATAGAGAAGAATCTTATAGAGCTTCACCAAGTGTTCTTAGACATGGCGGCTCTGGTGGAATCACAAGGTCAGCAACTAAATGACATAGAAAGCCACGTCTCGAAGGCGAGCTCGTTCGTGAGAAGAGGGACAGACCAGCTTCAAGATGCAAGAGAATACCAAAAGAGCTCGAGGAAATGGACTTGTTATGCCATTCTTCTCTTCATAGTCGTTTTCGCTTTGCTTCTCATACCAGCCTTACCTCATATCATGCTCATGTTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000149 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016050 GO:0016192 GO:0022406 GO:0022414 GO:0030133 GO:0030154 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032940 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044706 GO:0046903 GO:0048278 GO:0048284 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051704 GO:0060560 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097708 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

303

Amino Acids

34.47

Weight (kDa)

6.06

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	32 - 191	2.7e-51	Syntaxin
SNARE	PF05739	240 - 291	5.2e-17	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11250 AT1G61290 AT1G61290 AT4G03330
fragaria_vesca	FvH4_3g04130 FvH4_6g44820
malus_domestica	MD05G1324600.v1.1 MD10G1302400.v1.1 MD17G1082900.v1.1
prunus_persica	Prupe.3G232300_v2.0.a1 Prupe.4G036000_v2.0.a1
pyrus_communis	pycom05g29880 pycom10g25490
rosa_chinensis	RchiOBHm_Chr2g0162001 RchiOBHm_Chr5g0006581
rosa_laevigata	RLG00000021314 RLG00000031401
rosa_multiflora	Rmu_co8449309.1_g000002 Rmu_co8484739.1_g000001 Rmu_sc0005741.1_g000004 Rmu_sc0008428.1_g000004 Rmu_sc0011154.1_g000007 Rmu_sc0038528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069460 Rroxscaffold_2G00088410
rosa_rugosa	Rorug02G0493900 Rorug04G0422800
rosa_samantha	Rh2AG559800 Rh2BG573200 Rh2CG543400 Rh2DG583000 Rh5AG049900 Rh5BG049200 Rh5CG057600 Rh5DG048600
rosa_wichuraiana	Rw2G046330 Rw5G005000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	373
AatII	GACGTC	1 cut(s)	377
AccII	CGCG	2 cut(s)	442, 635
AciI	CCGC	3 cut(s)	442, 635, 692
AcsI	RAATTY	1 cut(s)	553
AcuI	CTGAAG	3 cut(s)	65, 155, 545
AcyI	GRCGYC	1 cut(s)	374
AdeI	CACNNNGTG	1 cut(s)	676
AfaI	GTAC	2 cut(s)	35, 201
AfiI	CCNNNNNNNGG	1 cut(s)	363
AflII	CTTAAG	1 cut(s)	404
AgsI	TTSAA	6 cut(s)	28, 305, 428, 620, 788, 907
AjiI	CACGTC	1 cut(s)	742
AjnI	CCWGG	2 cut(s)	346, 368
AluBI	AGCT	6 cut(s)	292, 403, 667, 756, 784, 813
AluI	AGCT	6 cut(s)	292, 403, 667, 756, 784, 813
Alw21I	GWGCWC	2 cut(s)	758, 815
Alw26I	GTCTC	5 cut(s)	80, 146, 337, 619, 748
Ama87I	CYCGRG	2 cut(s)	392, 814
AoxI	GGCC	3 cut(s)	54, 343, 589
ApoI	RAATTY	1 cut(s)	553
AspLEI	GCGC	3 cut(s)	301, 442, 477
AspS9I	GGNCC	5 cut(s)	40, 55, 259, 344, 366
AsuHPI	GGTGA	3 cut(s)	229, 554, 662
AvaI	CYCGRG	2 cut(s)	392, 814
AvaII	GGWCC	3 cut(s)	40, 259, 366
BanII	GRGCYC	2 cut(s)	758, 815
BbsI	GAAGAC	1 cut(s)	161
Bbv12I	GWGCWC	2 cut(s)	758, 815
BccI	CCATC	3 cut(s)	232, 236, 409
BceAI	ACGGC	1 cut(s)	309
BciT130I	CCWGG	2 cut(s)	348, 370
BclI	TGATCA	1 cut(s)	279
BcoDI	GTCTC	5 cut(s)	80, 146, 337, 619, 748
BfaI	CTAG	1 cut(s)	18
BfoI	RGCGCY	1 cut(s)	302
BfrI	CTTAAG	1 cut(s)	404
BisI	GCNGC	1 cut(s)	693
BlsI	GCNGC	1 cut(s)	694
Bme1390I	CCNGG	2 cut(s)	348, 370
Bme18I	GGWCC	3 cut(s)	40, 259, 366
BmeT110I	CYCGRG	2 cut(s)	392, 814
BmgBI	CACGTC	1 cut(s)	742
BmgT120I	GGNCC	5 cut(s)	40, 55, 259, 344, 366
BmrFI	CCNGG	2 cut(s)	348, 370
BmsI	GCATC	1 cut(s)	781
BpiI	GAAGAC	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	2 cut(s)	248, 314
BsaHI	GRCGYC	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	346
BsaWI	WCCGGW	1 cut(s)	494
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
BseBI	CCWGG	2 cut(s)	348, 370
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	4 cut(s)	70, 121, 247, 450
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseMII	CTCAG	2 cut(s)	269, 444
Bsh1236I	CGCG	2 cut(s)	442, 635
BshFI	GGCC	3 cut(s)	56, 345, 591
BsiHKAI	GWGCWC	2 cut(s)	758, 815
BsiHKCI	CYCGRG	2 cut(s)	392, 814
BsiSI	CCGG	1 cut(s)	495
BslFI	GGGAC	1 cut(s)	787
BslI	CCNNNNNNNGG	1 cut(s)	363
BsmAI	GTCTC	5 cut(s)	80, 146, 337, 619, 748
BsmBI	CGTCTC	2 cut(s)	80, 748
BsmFI	GGGAC	1 cut(s)	787
BsnI	GGCC	3 cut(s)	56, 345, 591
BsoBI	CYCGRG	2 cut(s)	392, 814
Bsp1286I	GDGCHC	2 cut(s)	758, 815
Bsp1407I	TGTACA	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	279
BspACI	CCGC	3 cut(s)	442, 635, 692
BspANI	GGCC	3 cut(s)	56, 345, 591
BspCNI	CTCAG	2 cut(s)	268, 445
BspFNI	CGCG	2 cut(s)	442, 635
BspQI	GCTCTTC	1 cut(s)	358
BspTI	CTTAAG	1 cut(s)	404
BsrGI	TGTACA	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	1 cut(s)	279
BssNI	GRCGYC	1 cut(s)	374
Bst2UI	CCWGG	2 cut(s)	348, 370
Bst4CI	ACNGT	2 cut(s)	199, 469
Bst6I	CTCTTC	4 cut(s)	180, 358, 763, 851
BstACI	GRCGYC	1 cut(s)	374
BstAFI	CTTAAG	1 cut(s)	404
BstAUI	TGTACA	1 cut(s)	199
BstC8I	GCNNGC	2 cut(s)	438, 754
BstDEI	CTNAG	3 cut(s)	255, 453, 682
BstF5I	GGATG	4 cut(s)	70, 121, 247, 450
BstFNI	CGCG	2 cut(s)	442, 635
BstH2I	RGCGCY	1 cut(s)	302
BstHHI	GCGC	3 cut(s)	301, 442, 477
BstKTI	GATC	1 cut(s)	282
BstMAI	GTCTC	5 cut(s)	80, 146, 337, 619, 748
BstMBI	GATC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstNI	CCWGG	2 cut(s)	348, 370
BstSCI	CCNGG	2 cut(s)	346, 368
BstUI	CGCG	2 cut(s)	442, 635
BstV2I	GAAGAC	1 cut(s)	161
BsuRI	GGCC	3 cut(s)	56, 345, 591
BtrI	CACGTC	1 cut(s)	742
BtsCI	GGATG	4 cut(s)	70, 121, 247, 450
Cac8I	GCNNGC	2 cut(s)	438, 754
CfoI	GCGC	3 cut(s)	301, 442, 477
Cfr13I	GGNCC	5 cut(s)	40, 55, 259, 344, 366
CseI	GACGC	1 cut(s)	641
Csp6I	GTAC	2 cut(s)	34, 200
CviAII	CATG	4 cut(s)	139, 688, 895, 901
CviQI	GTAC	2 cut(s)	34, 200
DdeI	CTNAG	3 cut(s)	255, 453, 682
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
DraIII	CACNNNGTG	1 cut(s)	676
DrdI	GACNNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	1 cut(s)	373
Eam1104I	CTCTTC	4 cut(s)	180, 358, 763, 851
EarI	CTCTTC	4 cut(s)	180, 358, 763, 851
Ecl136II	GAGCTC	2 cut(s)	756, 813
Eco24I	GRGCYC	2 cut(s)	758, 815
Eco47I	GGWCC	3 cut(s)	40, 259, 366
Eco53kI	GAGCTC	2 cut(s)	756, 813
Eco57I	CTGAAG	3 cut(s)	65, 155, 545
Eco88I	CYCGRG	2 cut(s)	392, 814
EcoICRI	GAGCTC	2 cut(s)	756, 813
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRII	CCWGG	2 cut(s)	346, 368
EcoT38I	GRGCYC	2 cut(s)	758, 815
Esp3I	CGTCTC	2 cut(s)	80, 748
FaeI	CATG	4 cut(s)	142, 691, 898, 904
FaqI	GGGAC	1 cut(s)	787
FatI	CATG	4 cut(s)	138, 687, 894, 900
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	693
FokI	GGATG	4 cut(s)	77, 128, 254, 457
FriOI	GRGCYC	2 cut(s)	758, 815
Fsp4HI	GCNGC	1 cut(s)	693
FspBI	CTAG	1 cut(s)	18
GlaI	GCGC	3 cut(s)	300, 441, 476
GluI	GCNGC	1 cut(s)	693
HaeII	RGCGCY	1 cut(s)	302
HaeIII	GGCC	3 cut(s)	56, 345, 591
HapII	CCGG	1 cut(s)	495
HgaI	GACGC	1 cut(s)	641
HhaI	GCGC	3 cut(s)	301, 442, 477
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	4 cut(s)	142, 691, 898, 904
Hin6I	GCGC	3 cut(s)	299, 440, 475
HinP1I	GCGC	3 cut(s)	299, 440, 475
HindIII	AAGCTT	2 cut(s)	290, 401
HinfI	GANTC	9 cut(s)	74, 154, 166, 176, 270, 390, 616, 655, 704
HpaII	CCGG	1 cut(s)	495
HphI	GGTGA	3 cut(s)	229, 554, 662
Hpy166II	GTNNAC	3 cut(s)	36, 202, 389
Hpy188I	TCNGA	3 cut(s)	230, 564, 613
Hpy8I	GTNNAC	3 cut(s)	36, 202, 389
Hpy99I	CGWCG	1 cut(s)	635
HpyAV	CCTTC	3 cut(s)	208, 214, 742
HpyCH4III	ACNGT	2 cut(s)	199, 469
HpyCH4IV	ACGT	2 cut(s)	374, 741
HpyCH4V	TGCA	2 cut(s)	192, 794
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	3 cut(s)	255, 453, 682
HpySE526I	ACGT	2 cut(s)	374, 741
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	4 cut(s)	142, 691, 898, 904
HspAI	GCGC	3 cut(s)	299, 440, 475
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	1 cut(s)	279
LguI	GCTCTTC	1 cut(s)	358
LweI	GCATC	1 cut(s)	781
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	2 cut(s)	374, 741
MalI	GATC	1 cut(s)	281
MboI	GATC	1 cut(s)	279
MboII	GAAGA	8 cut(s)	161, 197, 345, 551, 664, 780, 833, 838
MhlI	GDGCHC	2 cut(s)	758, 815
MluCI	AATT	1 cut(s)	553
MlyI	GAGTC	5 cut(s)	83, 148, 175, 279, 384
MnlI	CCTC	8 cut(s)	106, 107, 272, 289, 581, 764, 810, 897
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	1 cut(s)	899
MspCI	CTTAAG	1 cut(s)	404
MspI	CCGG	1 cut(s)	495
MspR9I	CCNGG	2 cut(s)	348, 370
MvaI	CCWGG	2 cut(s)	348, 370
MvnI	CGCG	2 cut(s)	442, 635
MwoI	GCNNNNNNNGC	1 cut(s)	298
NdeII	GATC	1 cut(s)	279
NlaIII	CATG	4 cut(s)	142, 691, 898, 904
PaeR7I	CTCGAG	1 cut(s)	814
PciSI	GCTCTTC	1 cut(s)	358
PfeI	GAWTC	4 cut(s)	176, 616, 655, 704
PflFI	GACNNNGTC	1 cut(s)	635
PkrI	GCNGC	1 cut(s)	694
PleI	GAGTC	5 cut(s)	82, 148, 174, 278, 384
PpsI	GAGTC	5 cut(s)	82, 148, 174, 278, 384
PpuMI	RGGWCCY	1 cut(s)	259
Psp124BI	GAGCTC	2 cut(s)	758, 815
Psp5II	RGGWCCY	1 cut(s)	259
Psp6I	CCWGG	2 cut(s)	346, 368
PspGI	CCWGG	2 cut(s)	346, 368
PspPI	GGNCC	5 cut(s)	40, 55, 259, 344, 366
PspPPI	RGGWCCY	1 cut(s)	259
PspXI	VCTCGAGB	1 cut(s)	814
PsyI	GACNNNGTC	1 cut(s)	635
RsaI	GTAC	2 cut(s)	35, 201
RsaNI	GTAC	2 cut(s)	34, 200
RseI	CAYNNNNRTG	1 cut(s)	899
SacI	GAGCTC	2 cut(s)	758, 815
SapI	GCTCTTC	1 cut(s)	358
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	1 cut(s)	693
Sau3AI	GATC	1 cut(s)	279
Sau96I	GGNCC	5 cut(s)	40, 55, 259, 344, 366
SchI	GAGTC	5 cut(s)	83, 148, 175, 279, 384
ScrFI	CCNGG	2 cut(s)	348, 370
SduI	GDGCHC	2 cut(s)	758, 815
SfaNI	GCATC	1 cut(s)	781
Sfr274I	CTCGAG	1 cut(s)	814
SinI	GGWCC	3 cut(s)	40, 259, 366
SlaI	CTCGAG	1 cut(s)	814
SmiMI	CAYNNNNRTG	1 cut(s)	899
SmlI	CTYRAG	4 cut(s)	263, 293, 404, 814
SmoI	CTYRAG	4 cut(s)	263, 293, 404, 814
Sse9I	AATT	1 cut(s)	553
SsiI	CCGC	3 cut(s)	442, 635, 692
SspI	AATATT	1 cut(s)	597
SspMI	CTAG	1 cut(s)	18
SstI	GAGCTC	2 cut(s)	758, 815
StyD4I	CCNGG	2 cut(s)	346, 368
TaaI	ACNGT	2 cut(s)	199, 469
TaiI	ACGT	2 cut(s)	377, 744
TaqI	TCGA	5 cut(s)	99, 120, 536, 746, 815
TasI	AATT	1 cut(s)	553
TatI	WGTACW	2 cut(s)	33, 199
TauI	GCSGC	1 cut(s)	695
TfiI	GAWTC	4 cut(s)	176, 616, 655, 704
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TspDTI	ATGAA	5 cut(s)	17, 107, 155, 461, 838
TspGWI	ACGGA	1 cut(s)	53
Tth111I	GACNNNGTC	1 cut(s)	635
Vha464I	CTTAAG	1 cut(s)	404
VpaK11BI	GGWCC	3 cut(s)	40, 259, 366
XapI	RAATTY	1 cut(s)	553
XhoI	CTCGAG	1 cut(s)	814
XspI	CTAG	1 cut(s)	18
ZraI	GACGTC	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.