Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003204

Physical Location & Seq

Genomic Coordinates Forward (+)

1466284 .. 1467750

Gene Structure 1467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G03330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGAACGATCTTATCTCAAGCTCATTCAAGAGATACACAGACTTAAACCACCAGGTCCAACTCGATGACATCGAGTCTCAAAATGTTTCTCTTGATTCAGGCAACCTCGATGAGTTCTTTGGATATGTCGAGAGTGTTAAAGAAGACATGAAAGCTGTCGACGAGATTCATAAGCGTCTCCAAGATGCTAATGAAGAGTCCAAGACCGTACATGATTCCAAGGCCGTGAAGAAGCTTCGTGCTCGTATGGATTCGAGTGTTACAGAGGTCTTGAAACGTGTCAAGATGATAAAGACTAAGCTTGTAGCTTTGGAGAAATCAAATGCTGCGCAGAGGAAAGTCGCTGGTTGTGGTCCTGGCTCGTCTGCTGATCGGACCAGAACATCGGTCGTTAGTGGATTGGGGAAGAAGCTTAAAGACATGATGGATGATTTTCAGAGACTACGAACCAAAATGGCTACTGAATACAAAGAAACGGTCGAGAGAAGGTACTTCACTGTAACGGGGCAAAAAGCGGACGAAGAGACGGTCGAGAAGCTCATATCGAGCGGAGAGAGCGAACGTTTTCTCCAAAAAGCAATACAAGAGCAAGGTCGCGGACAGGTCATGGACACATTATCAGAGATTCAAGAACGACACGACACGGTCAAGGAGATAGAACGGAGTCTGTTAGAGCTGCACCAAGTGTTCCTCGACATGGCTGCTCTTGTCGAAGCTCAAGGGAATATGCTCAATGACATTGAATCAAATGTCTCAAAGGCGAGCTCTTTCGTCATGAGAGGGACTGATCAATTGCATGGGGCTAAAGTACTTCAGAGGAACAACAGGAAATGGGCTTGTATCGCCACTATCCTCGCTATTGTAGTTGTTATTGTGATTCTTTTCCCAATCCTCTTTAACACTCTACTTCGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000149 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016050 GO:0016192 GO:0022406 GO:0022414 GO:0030133 GO:0030154 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032940 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044706 GO:0046903 GO:0048278 GO:0048284 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051704 GO:0060560 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097708 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

305

Amino Acids

34.48

Weight (kDa)

7.03

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	35 - 194	1.8e-52	Syntaxin
SNARE	PF05739	242 - 294	5.4e-16	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11250 AT1G61290 AT1G61290 AT4G03330
fragaria_vesca	FvH4_3g04130 FvH4_6g44820
malus_domestica	MD05G1324600.v1.1 MD10G1302400.v1.1 MD17G1082900.v1.1
prunus_persica	Prupe.3G232300_v2.0.a1 Prupe.4G036000_v2.0.a1
pyrus_communis	pycom05g29880 pycom10g25490
rosa_chinensis	RchiOBHm_Chr2g0162001 RchiOBHm_Chr5g0006581
rosa_laevigata	RLG00000021314 RLG00000031401
rosa_multiflora	Rmu_co8449309.1_g000002 Rmu_co8484739.1_g000001 Rmu_sc0005741.1_g000004 Rmu_sc0008428.1_g000004 Rmu_sc0011154.1_g000007 Rmu_sc0038528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069460 Rroxscaffold_2G00088410
rosa_rugosa	Rorug02G0493900 Rorug04G0422800
rosa_samantha	Rh2AG559800 Rh2BG573200 Rh2CG543400 Rh2DG583000 Rh5AG049900 Rh5BG049200 Rh5CG057600 Rh5DG048600
rosa_wichuraiana	Rw2G046330 Rw5G005000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	330
AccBSI	CCGCTC	1 cut(s)	549
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	1 cut(s)	597
AciI	CCGC	3 cut(s)	515, 549, 597
AclI	AACGTT	1 cut(s)	562
AcuI	CTGAAG	1 cut(s)	797
AdeI	CACNNNGTG	1 cut(s)	685
AfaI	GTAC	3 cut(s)	210, 491, 810
AfiI	CCNNNNNNNGG	1 cut(s)	697
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	4 cut(s)	28, 274, 629, 743
AhdI	GACNNNNNGTC	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	51, 355
AloI	GAACNNNNNNTCC	2 cut(s)	552, 584
Alw21I	GWGCWC	2 cut(s)	244, 767
Alw26I	GTCTC	5 cut(s)	81, 182, 433, 518, 757
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	3 cut(s)	326, 676, 701
ArsI	GACNNNNNNTTYG	4 cut(s)	462, 494, 513, 545
Asp700I	GAANNNNTTC	1 cut(s)	564
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	3 cut(s)	55, 353, 375
AvaII	GGWCC	3 cut(s)	55, 353, 375
BanII	GRGCYC	1 cut(s)	767
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	2 cut(s)	244, 767
BbvI	GCAGC	3 cut(s)	313, 663, 688
BccI	CCATC	1 cut(s)	418
BceAI	ACGGC	1 cut(s)	209
BcgI	CGANNNNNNTGC	2 cut(s)	683, 717
BciT130I	CCWGG	2 cut(s)	53, 357
BclI	TGATCA	1 cut(s)	787
BcoDI	GTCTC	5 cut(s)	81, 182, 433, 518, 757
BisI	GCNGC	3 cut(s)	327, 677, 702
BlsI	GCNGC	3 cut(s)	328, 678, 703
BmcAI	AGTACT	1 cut(s)	810
Bme1390I	CCNGG	2 cut(s)	53, 357
Bme18I	GGWCC	3 cut(s)	55, 353, 375
BmeRI	GACNNNNNGTC	1 cut(s)	73
BmgT120I	GGNCC	3 cut(s)	55, 353, 375
BmrFI	CCNGG	2 cut(s)	53, 357
BmsI	GCATC	1 cut(s)	175
BpiI	GAAGAC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	702
BsaJI	CCNNGG	1 cut(s)	219
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	1 cut(s)	697
BseBI	CCWGG	2 cut(s)	53, 357
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	1 cut(s)	697
BseXI	GCAGC	3 cut(s)	313, 663, 688
BsgI	GTGCAG	1 cut(s)	662
Bsh1236I	CGCG	1 cut(s)	597
Bsh1285I	CGRYCG	3 cut(s)	390, 480, 531
BshFI	GGCC	1 cut(s)	224
BsiEI	CGRYCG	3 cut(s)	390, 480, 531
BsiHKAI	GWGCWC	2 cut(s)	244, 767
BslFI	GGGAC	1 cut(s)	796
BslI	CCNNNNNNNGG	1 cut(s)	697
BsmAI	GTCTC	5 cut(s)	81, 182, 433, 518, 757
BsmBI	CGTCTC	2 cut(s)	182, 518
BsmFI	GGGAC	1 cut(s)	796
BsnI	GGCC	1 cut(s)	224
Bsp1286I	GDGCHC	2 cut(s)	244, 767
Bsp143I	GATC	3 cut(s)	7, 370, 787
BspACI	CCGC	3 cut(s)	515, 549, 597
BspANI	GGCC	1 cut(s)	224
BspFNI	CGCG	1 cut(s)	597
BspHI	TCATGA	1 cut(s)	774
BsrBI	CCGCTC	1 cut(s)	549
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	3 cut(s)	7, 370, 787
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	2 cut(s)	53, 357
Bst4CI	ACNGT	5 cut(s)	208, 478, 499, 529, 646
Bst6I	CTCTTC	2 cut(s)	189, 516
BstC8I	GCNNGC	1 cut(s)	763
BstDEI	CTNAG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	433
BstFNI	CGCG	1 cut(s)	597
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	3 cut(s)	10, 373, 790
BstMAI	GTCTC	5 cut(s)	81, 182, 433, 518, 757
BstMBI	GATC	3 cut(s)	7, 370, 787
BstMCI	CGRYCG	3 cut(s)	390, 480, 531
BstMWI	GCNNNNNNNGC	2 cut(s)	555, 842
BstNI	CCWGG	2 cut(s)	53, 357
BstSCI	CCNGG	2 cut(s)	51, 355
BstUI	CGCG	1 cut(s)	597
BstV1I	GCAGC	3 cut(s)	313, 663, 688
BstV2I	GAAGAC	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	433
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	1 cut(s)	763
CciI	TCATGA	1 cut(s)	774
CfoI	GCGC	1 cut(s)	331
Cfr13I	GGNCC	3 cut(s)	55, 353, 375
CseI	GACGC	1 cut(s)	164
CsiI	ACCWGGT	1 cut(s)	51
Csp6I	GTAC	3 cut(s)	209, 490, 809
CviAII	CATG	7 cut(s)	148, 212, 421, 607, 697, 775, 797
CviQI	GTAC	3 cut(s)	209, 490, 809
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	3 cut(s)	9, 372, 789
DpnII	GATC	3 cut(s)	7, 370, 787
DraIII	CACNNNGTG	1 cut(s)	685
DriI	GACNNNNNGTC	1 cut(s)	73
Eam1104I	CTCTTC	2 cut(s)	189, 516
Eam1105I	GACNNNNNGTC	1 cut(s)	73
EarI	CTCTTC	2 cut(s)	189, 516
Ecl136II	GAGCTC	1 cut(s)	765
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	767
Eco47I	GGWCC	3 cut(s)	55, 353, 375
Eco53kI	GAGCTC	1 cut(s)	765
Eco57I	CTGAAG	1 cut(s)	797
EcoICRI	GAGCTC	1 cut(s)	765
EcoRII	CCWGG	2 cut(s)	51, 355
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	767
ErhI	CCWWGG	1 cut(s)	219
Esp3I	CGTCTC	2 cut(s)	182, 518
FaeI	CATG	7 cut(s)	151, 215, 424, 610, 700, 778, 800
FaqI	GGGAC	1 cut(s)	796
FatI	CATG	7 cut(s)	147, 211, 420, 606, 696, 774, 796
FbaI	TGATCA	1 cut(s)	787
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	3 cut(s)	327, 677, 702
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	1 cut(s)	767
Fsp4HI	GCNGC	3 cut(s)	327, 677, 702
FspI	TGCGCA	1 cut(s)	330
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	3 cut(s)	327, 677, 702
HaeIII	GGCC	1 cut(s)	224
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	1 cut(s)	331
Hin1II	CATG	7 cut(s)	151, 215, 424, 610, 700, 778, 800
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	3 cut(s)	233, 299, 410
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	4 cut(s)	375, 438, 622, 816
Hpy188III	TCNNGA	9 cut(s)	28, 92, 130, 271, 283, 481, 532, 629, 775
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	480
HpyCH4III	ACNGT	5 cut(s)	208, 478, 499, 529, 646
HpyCH4IV	ACGT	2 cut(s)	277, 562
HpyCH4V	TGCA	2 cut(s)	679, 796
HpyF10VI	GCNNNNNNNGC	2 cut(s)	555, 842
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	2 cut(s)	277, 562
Hsp92II	CATG	7 cut(s)	151, 215, 424, 610, 700, 778, 800
HspAI	GCGC	1 cut(s)	329
Ksp22I	TGATCA	1 cut(s)	787
Kzo9I	GATC	3 cut(s)	7, 370, 787
LpnPI	CCDG	9 cut(s)	38, 65, 84, 330, 342, 369, 391, 587, 811
Lsp1109I	GCAGC	3 cut(s)	313, 663, 688
LweI	GCATC	1 cut(s)	175
MabI	ACCWGGT	1 cut(s)	51
MaeII	ACGT	2 cut(s)	277, 562
MaeIII	GTNAC	2 cut(s)	259, 499
MalI	GATC	3 cut(s)	9, 372, 789
MbiI	CCGCTC	1 cut(s)	549
MboI	GATC	3 cut(s)	7, 370, 787
MboII	GAAGA	5 cut(s)	155, 206, 241, 418, 533
MfeI	CAATTG	1 cut(s)	791
MhlI	GDGCHC	2 cut(s)	244, 767
MluCI	AATT	1 cut(s)	791
MlyI	GAGTC	3 cut(s)	83, 206, 673
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	8 cut(s)	116, 259, 327, 701, 773, 810, 863, 902
MroXI	GAANNNNTTC	1 cut(s)	564
MseI	TTAA	4 cut(s)	44, 138, 414, 897
MspR9I	CCNGG	2 cut(s)	53, 357
MunI	CAATTG	1 cut(s)	791
MvaI	CCWGG	2 cut(s)	53, 357
MvnI	CGCG	1 cut(s)	597
MwoI	GCNNNNNNNGC	2 cut(s)	555, 842
NdeII	GATC	3 cut(s)	7, 370, 787
NlaIII	CATG	7 cut(s)	151, 215, 424, 610, 700, 778, 800
NsbI	TGCGCA	1 cut(s)	330
PagI	TCATGA	1 cut(s)	774
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	564
PfeI	GAWTC	7 cut(s)	95, 166, 215, 251, 625, 743, 877
PflFI	GACNNNGTC	1 cut(s)	644
PkrI	GCNGC	3 cut(s)	328, 678, 703
PleI	GAGTC	3 cut(s)	82, 205, 672
PpsI	GAGTC	3 cut(s)	82, 205, 672
Psp124BI	GAGCTC	1 cut(s)	767
Psp1406I	AACGTT	1 cut(s)	562
Psp6I	CCWGG	2 cut(s)	51, 355
PspGI	CCWGG	2 cut(s)	51, 355
PspPI	GGNCC	3 cut(s)	55, 353, 375
PsyI	GACNNNGTC	1 cut(s)	644
RsaI	GTAC	3 cut(s)	210, 491, 810
RsaNI	GTAC	3 cut(s)	209, 490, 809
SacI	GAGCTC	1 cut(s)	767
SalI	GTCGAC	1 cut(s)	158
SaqAI	TTAA	4 cut(s)	44, 138, 414, 897
SatI	GCNGC	3 cut(s)	327, 677, 702
Sau3AI	GATC	3 cut(s)	7, 370, 787
Sau96I	GGNCC	3 cut(s)	55, 353, 375
ScaI	AGTACT	1 cut(s)	810
SchI	GAGTC	3 cut(s)	83, 206, 673
ScrFI	CCNGG	2 cut(s)	53, 357
SduI	GDGCHC	2 cut(s)	244, 767
SexAI	ACCWGGT	1 cut(s)	51
SfaNI	GCATC	1 cut(s)	175
SinI	GGWCC	3 cut(s)	55, 353, 375
SmlI	CTYRAG	2 cut(s)	16, 717
SmoI	CTYRAG	2 cut(s)	16, 717
Sse9I	AATT	1 cut(s)	791
SsiI	CCGC	3 cut(s)	515, 549, 597
SstI	GAGCTC	1 cut(s)	767
StyD4I	CCNGG	2 cut(s)	51, 355
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	5 cut(s)	208, 478, 499, 529, 646
TaiI	ACGT	2 cut(s)	280, 565
TaqII	GACCGA	1 cut(s)	376
TasI	AATT	1 cut(s)	791
TatI	WGTACW	1 cut(s)	808
TfiI	GAWTC	7 cut(s)	95, 166, 215, 251, 625, 743, 877
Tru1I	TTAA	4 cut(s)	44, 138, 414, 897
Tru9I	TTAA	4 cut(s)	44, 138, 414, 897
TscAI	CASTG	1 cut(s)	502
TseI	GCWGC	3 cut(s)	326, 676, 701
TspDTI	ATGAA	4 cut(s)	17, 158, 164, 207
TspGWI	ACGGA	1 cut(s)	676
TspRI	CASTG	1 cut(s)	502
Tth111I	GACNNNGTC	1 cut(s)	644
VpaK11BI	GGWCC	3 cut(s)	55, 353, 375
XmiI	GTMKAC	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	564
ZrmI	AGTACT	1 cut(s)	810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.