Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008428.1

Orthogroup ID

OG0003204

Physical Location & Seq

Genomic Coordinates Forward (+)

10169 .. 10783

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008428.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atgaacgatctgttttcgaataattcattcagacgatacaaggaccttgagcagcaggtctacattgatgatgtccgcagcgaggcgtgggatgagactgtcaatcttgatggattcttcaggaaagtagagaatgtgaaggatgacatgggagctgtggagaagctttacaagcagctagaggaagcaaatgaggagagcaaacaagtccatgatgccaagtccatgaaagggcttcgcgcaaggatggactcagatgttgagaaagtcttgaaacttgccaaagtcatcaaggagaagctggaaacacttgaactctccaatgctgatcagcgcaaacttcctgggtgtggaccaggatcatcttctgatcgaacgctgcaccaagtgttcctagacatggctgcattggttgatgcccaagggcagcagctgaatgacatagagtgccaagtcgcgcgggcgagctcgtttgttaggcgaggaactgtgcagcttgagcaagctaaggagtatcagaagagcagcaggaagtgcatttgcattggcatagttctggccatttgtttggttatcattcttctttttcctattctgattcacttcaagagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

204

Amino Acids

23.21

Weight (kDa)

6.0

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11250 AT1G61290 AT1G61290 AT4G03330
fragaria_vesca	FvH4_3g04130 FvH4_6g44820
malus_domestica	MD05G1324600.v1.1 MD10G1302400.v1.1 MD17G1082900.v1.1
prunus_persica	Prupe.3G232300_v2.0.a1 Prupe.4G036000_v2.0.a1
pyrus_communis	pycom05g29880 pycom10g25490
rosa_chinensis	RchiOBHm_Chr2g0162001 RchiOBHm_Chr5g0006581
rosa_laevigata	RLG00000021314 RLG00000031401
rosa_multiflora	Rmu_co8449309.1_g000002 Rmu_co8484739.1_g000001 Rmu_sc0005741.1_g000004 Rmu_sc0008428.1_g000004 Rmu_sc0011154.1_g000007 Rmu_sc0038528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069460 Rroxscaffold_2G00088410
rosa_rugosa	Rorug02G0493900 Rorug04G0422800
rosa_samantha	Rh2AG559800 Rh2BG573200 Rh2CG543400 Rh2DG583000 Rh5AG049900 Rh5BG049200 Rh5CG057600 Rh5DG048600
rosa_wichuraiana	Rw2G046330 Rw5G005000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	46
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	3 cut(s)	240, 458, 460
AciI	CCGC	2 cut(s)	76, 460
AclWI	GGATC	1 cut(s)	367
AcoI	YGGCCR	1 cut(s)	558
AcuI	CTGAAG	1 cut(s)	103
AdeI	CACNNNGTG	1 cut(s)	388
AfiI	CCNNNNNNNGG	4 cut(s)	82, 231, 350, 400
AgsI	TTSAA	3 cut(s)	274, 314, 607
AjnI	CCWGG	2 cut(s)	343, 355
AluBI	AGCT	8 cut(s)	155, 166, 178, 301, 433, 468, 496, 506
AluI	AGCT	8 cut(s)	155, 166, 178, 301, 433, 468, 496, 506
Alw21I	GWGCWC	1 cut(s)	470
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	1 cut(s)	367
AlwNI	CAGNNNCTG	1 cut(s)	433
AoxI	GGCC	1 cut(s)	558
ApeKI	GCWGC	9 cut(s)	52, 78, 175, 379, 404, 427, 430, 493, 525
AspLEI	GCGC	3 cut(s)	242, 336, 460
AspS9I	GGNCC	2 cut(s)	43, 353
AsuII	TTCGAA	1 cut(s)	17
AvaII	GGWCC	2 cut(s)	43, 353
BalI	TGGCCA	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	470
BbvI	GCAGC	9 cut(s)	64, 90, 187, 366, 391, 439, 442, 505, 537
BccI	CCATC	2 cut(s)	104, 241
BciT130I	CCWGG	2 cut(s)	345, 357
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	2 cut(s)	179, 395
BfuAI	ACCTGC	1 cut(s)	46
BisI	GCNGC	9 cut(s)	53, 79, 176, 380, 405, 428, 431, 494, 526
BlsI	GCNGC	9 cut(s)	54, 80, 177, 381, 406, 429, 432, 495, 527
Bme1390I	CCNGG	2 cut(s)	345, 357
Bme18I	GGWCC	2 cut(s)	43, 353
BmgT120I	GGNCC	2 cut(s)	43, 353
BmrFI	CCNGG	2 cut(s)	345, 357
BmsI	GCATC	2 cut(s)	205, 406
Bpu10I	CCTNAGC	1 cut(s)	507
Bpu14I	TTCGAA	1 cut(s)	17
BpuEI	CTTGAG	2 cut(s)	68, 518
BsaJI	CCNNGG	2 cut(s)	344, 421
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 231, 350, 400
BseBI	CCWGG	2 cut(s)	345, 357
BseDI	CCNNGG	2 cut(s)	344, 421
BseGI	GGATG	3 cut(s)	97, 148, 252
BseLI	CCNNNNNNNGG	4 cut(s)	82, 231, 350, 400
BseMII	CTCAG	1 cut(s)	267
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	9 cut(s)	64, 90, 187, 366, 391, 439, 442, 505, 537
BsgI	GTGCAG	2 cut(s)	365, 512
Bsh1236I	CGCG	3 cut(s)	240, 458, 460
BshFI	GGCC	1 cut(s)	560
BsiHKAI	GWGCWC	1 cut(s)	470
BslI	CCNNNNNNNGG	4 cut(s)	82, 231, 350, 400
BsmAI	GTCTC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	560
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	470
Bsp143I	GATC	4 cut(s)	7, 328, 359, 370
BspACI	CCGC	2 cut(s)	76, 460
BspANI	GGCC	1 cut(s)	560
BspCNI	CTCAG	1 cut(s)	266
BspFNI	CGCG	3 cut(s)	240, 458, 460
BspMI	ACCTGC	1 cut(s)	46
BspPI	GGATC	1 cut(s)	367
BspQI	GCTCTTC	1 cut(s)	515
BspT104I	TTCGAA	1 cut(s)	17
BssECI	CCNNGG	2 cut(s)	344, 421
BssMI	GATC	4 cut(s)	7, 328, 359, 370
BssT1I	CCWWGG	1 cut(s)	421
Bst2UI	CCWGG	2 cut(s)	345, 357
Bst4CI	ACNGT	2 cut(s)	100, 490
Bst6I	CTCTTC	1 cut(s)	515
BstAPI	GCANNNNNTGC	1 cut(s)	534
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	3 cut(s)	462, 466, 504
BstDEI	CTNAG	2 cut(s)	253, 507
BstF5I	GGATG	3 cut(s)	97, 148, 252
BstFNI	CGCG	3 cut(s)	240, 458, 460
BstHHI	GCGC	3 cut(s)	242, 336, 460
BstKTI	GATC	4 cut(s)	10, 331, 362, 373
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	4 cut(s)	7, 328, 359, 370
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 499, 534
BstNI	CCWGG	2 cut(s)	345, 357
BstSCI	CCNGG	2 cut(s)	343, 355
BstUI	CGCG	3 cut(s)	240, 458, 460
BstV1I	GCAGC	9 cut(s)	64, 90, 187, 366, 391, 439, 442, 505, 537
BstXI	CCANNNNNNTGG	1 cut(s)	568
BsuRI	GGCC	1 cut(s)	560
BtsCI	GGATG	3 cut(s)	97, 148, 252
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	3 cut(s)	462, 466, 504
CaiI	CAGNNNCTG	1 cut(s)	433
CfoI	GCGC	3 cut(s)	242, 336, 460
Cfr13I	GGNCC	2 cut(s)	43, 353
CviAII	CATG	4 cut(s)	148, 212, 226, 400
DdeI	CTNAG	2 cut(s)	253, 507
DpnI	GATC	4 cut(s)	9, 330, 361, 372
DpnII	GATC	4 cut(s)	7, 328, 359, 370
DraIII	CACNNNGTG	1 cut(s)	388
EaeI	YGGCCR	1 cut(s)	558
Eam1104I	CTCTTC	1 cut(s)	515
EarI	CTCTTC	1 cut(s)	515
Ecl136II	GAGCTC	1 cut(s)	468
Eco130I	CCWWGG	1 cut(s)	421
Eco24I	GRGCYC	1 cut(s)	470
Eco47I	GGWCC	2 cut(s)	43, 353
Eco53kI	GAGCTC	1 cut(s)	468
Eco57I	CTGAAG	1 cut(s)	103
EcoICRI	GAGCTC	1 cut(s)	468
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	343, 355
EcoT14I	CCWWGG	1 cut(s)	421
EcoT38I	GRGCYC	1 cut(s)	470
ErhI	CCWWGG	1 cut(s)	421
FaeI	CATG	4 cut(s)	151, 215, 229, 403
FaiI	YATR	6 cut(s)	149, 213, 227, 401, 443, 551
FatI	CATG	4 cut(s)	147, 211, 225, 399
FauI	CCCGC	1 cut(s)	453
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	9 cut(s)	53, 79, 176, 380, 405, 428, 431, 494, 526
FokI	GGATG	3 cut(s)	104, 155, 259
FriOI	GRGCYC	1 cut(s)	470
Fsp4HI	GCNGC	9 cut(s)	53, 79, 176, 380, 405, 428, 431, 494, 526
FspBI	CTAG	2 cut(s)	179, 395
GlaI	GCGC	3 cut(s)	241, 335, 459
GluI	GCNGC	9 cut(s)	53, 79, 176, 380, 405, 428, 431, 494, 526
HaeIII	GGCC	1 cut(s)	560
HhaI	GCGC	3 cut(s)	242, 336, 460
Hin1II	CATG	4 cut(s)	151, 215, 229, 403
Hin6I	GCGC	3 cut(s)	240, 334, 458
HinP1I	GCGC	3 cut(s)	240, 334, 458
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	3 cut(s)	114, 251, 598
Hpy166II	GTNNAC	2 cut(s)	61, 353
Hpy188I	TCNGA	5 cut(s)	32, 256, 370, 519, 597
Hpy188III	TCNNGA	4 cut(s)	107, 121, 271, 607
Hpy8I	GTNNAC	2 cut(s)	61, 353
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	2 cut(s)	100, 490
HpyCH4V	TGCA	5 cut(s)	382, 407, 493, 537, 543
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 499, 534
HpyF3I	CTNAG	2 cut(s)	253, 507
Hsp92II	CATG	4 cut(s)	151, 215, 229, 403
HspAI	GCGC	3 cut(s)	240, 334, 458
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	4 cut(s)	7, 328, 359, 370
LguI	GCTCTTC	1 cut(s)	515
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	9 cut(s)	41, 106, 287, 330, 342, 357, 369, 514, 542
Lsp1109I	GCAGC	9 cut(s)	64, 90, 187, 366, 391, 439, 442, 505, 537
LweI	GCATC	2 cut(s)	205, 406
MaeI	CTAG	2 cut(s)	179, 395
MalI	GATC	4 cut(s)	9, 330, 361, 372
MboI	GATC	4 cut(s)	7, 328, 359, 370
MboII	GAAGA	4 cut(s)	109, 357, 532, 572
MhlI	GDGCHC	1 cut(s)	470
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	1 cut(s)	22
MluNI	TGGCCA	1 cut(s)	560
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	4 cut(s)	76, 175, 187, 476
Mox20I	TGGCCA	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	560
MseI	TTAA	1 cut(s)	613
Msp20I	TGGCCA	1 cut(s)	560
MspA1I	CMGCKG	1 cut(s)	433
MspR9I	CCNGG	2 cut(s)	345, 357
MvaI	CCWGG	2 cut(s)	345, 357
MvnI	CGCG	3 cut(s)	240, 458, 460
MwoI	GCNNNNNNNGC	3 cut(s)	172, 499, 534
NdeII	GATC	4 cut(s)	7, 328, 359, 370
NlaIII	CATG	4 cut(s)	151, 215, 229, 403
NspV	TTCGAA	1 cut(s)	17
PciSI	GCTCTTC	1 cut(s)	515
PfeI	GAWTC	2 cut(s)	114, 598
PkrI	GCNGC	9 cut(s)	54, 80, 177, 381, 406, 429, 432, 495, 527
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PpuMI	RGGWCCY	1 cut(s)	43
Psp124BI	GAGCTC	1 cut(s)	470
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	2 cut(s)	343, 355
PspGI	CCWGG	2 cut(s)	343, 355
PspPI	GGNCC	2 cut(s)	43, 353
PspPPI	RGGWCCY	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	433
SacI	GAGCTC	1 cut(s)	470
SapI	GCTCTTC	1 cut(s)	515
SaqAI	TTAA	1 cut(s)	613
SatI	GCNGC	9 cut(s)	53, 79, 176, 380, 405, 428, 431, 494, 526
Sau3AI	GATC	4 cut(s)	7, 328, 359, 370
Sau96I	GGNCC	2 cut(s)	43, 353
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	2 cut(s)	345, 357
SduI	GDGCHC	1 cut(s)	470
SfaNI	GCATC	2 cut(s)	205, 406
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	2 cut(s)	43, 353
SmlI	CTYRAG	2 cut(s)	47, 497
SmoI	CTYRAG	2 cut(s)	47, 497
Sse9I	AATT	1 cut(s)	22
SsiI	CCGC	2 cut(s)	76, 460
SspMI	CTAG	2 cut(s)	179, 395
SstI	GAGCTC	1 cut(s)	470
StyD4I	CCNGG	2 cut(s)	343, 355
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	2 cut(s)	100, 490
TaqI	TCGA	2 cut(s)	17, 373
TasI	AATT	1 cut(s)	22
TfiI	GAWTC	2 cut(s)	114, 598
Tru1I	TTAA	1 cut(s)	613
Tru9I	TTAA	1 cut(s)	613
TseI	GCWGC	9 cut(s)	52, 78, 175, 379, 404, 427, 430, 493, 525
TspDTI	ATGAA	3 cut(s)	15, 17, 242
VpaK11BI	GGWCC	2 cut(s)	43, 353
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	2 cut(s)	179, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.