Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003204

Physical Location & Seq

Genomic Coordinates Forward (+)

78934241 .. 78935152

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG573200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAACGATCTGTTTTCGAATAATTCATTCAGACGATACAAGGACCTTGAGCAGCAGGTCTACATTGATGATGTCCGCAGCGAGGCGTGGGATGAGACTGTCAATCTTGATGGATTCTTCAGGAAAGTAGAGAATGTGAAGGATGACATGGGAGCTGTGGAGAAGCTTTACAAGCAGCTAGAGGAAGCAAATGAGGAGAGCAAACAAGTCCATGATGCCAAGTCCATGAAAGGGCTTCGCGCAAGGATGGACTCAGATGTTGAGAAAGTCTTGAAACTTGCCAAAGTCATCAAGGAGAAGCTGGAAACACTTGAACTCTCCAATGCTGATCAGCGCAAACTTCCTGGGTGTGGACCAGGATCATCTTCTGATCGAACGAGAACTTCAGTAATTAATGGTTTGGCGAAAAAGCTTCAGGCCATGATGGATGATTTTCAGGGCCTAAGGGCCAAAATAGCCTCTGAATACAAAGAGACGGTTGGAAGGAGGTACTTCACAATAACAGGTGAGAAGGTCAACAATGAAATGATTGAGAATCTGATTGCTAGTGGAGAGGGTGAGACATTGGTTCAGAGGGCGATCCAGGAACAGGGCCGTGGTCAGATTTTGGACACAATTCAAGAAATCCAAGAGCGGCGCGATGCTGTGAAGGAGATTGAGCAGAGCCTCATTGAGCTGCACCAAGTGTTCCTAGACATGGCTGCATTGGTTGATGCCCAAGGGCAGCAGCTGAATGACATAGAGAGCCAAGTCGCGCGGGCGAGCTCGTTTGTTAGGGGAGGAACTGTGCAGCTTGAGCAAGCTAAGGAGTATCAGAAGAGCAGCAGGAAGTGCATTTGCATTGGCATAGTTCTGGCCATTTGTTTGGTTATCATTCTTCTTTTTCCTATTCTGATTCACTTCAAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

303

Amino Acids

34.32

Weight (kDa)

5.42

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	35 - 194	4.1e-49	Syntaxin
SNARE	PF05739	243 - 294	2.3e-14	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11250 AT1G61290 AT1G61290 AT4G03330
fragaria_vesca	FvH4_3g04130 FvH4_6g44820
malus_domestica	MD05G1324600.v1.1 MD10G1302400.v1.1 MD17G1082900.v1.1
prunus_persica	Prupe.3G232300_v2.0.a1 Prupe.4G036000_v2.0.a1
pyrus_communis	pycom05g29880 pycom10g25490
rosa_chinensis	RchiOBHm_Chr2g0162001 RchiOBHm_Chr5g0006581
rosa_laevigata	RLG00000021314 RLG00000031401
rosa_multiflora	Rmu_co8449309.1_g000002 Rmu_co8484739.1_g000001 Rmu_sc0005741.1_g000004 Rmu_sc0008428.1_g000004 Rmu_sc0011154.1_g000007 Rmu_sc0038528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069460 Rroxscaffold_2G00088410
rosa_rugosa	Rorug02G0493900 Rorug04G0422800
rosa_samantha	Rh2AG559800 Rh2BG573200 Rh2CG543400 Rh2DG583000 Rh5AG049900 Rh5BG049200 Rh5CG057600 Rh5DG048600
rosa_wichuraiana	Rw2G046330 Rw5G005000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	46
AccBSI	CCGCTC	1 cut(s)	634
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	4 cut(s)	240, 639, 755, 757
AciI	CCGC	3 cut(s)	76, 634, 757
AclWI	GGATC	2 cut(s)	367, 574
AcoI	YGGCCR	1 cut(s)	855
AcuI	CTGAAG	3 cut(s)	103, 369, 398
AdeI	CACNNNGTG	1 cut(s)	685
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	5 cut(s)	82, 231, 350, 589, 697
AgsI	TTSAA	4 cut(s)	274, 314, 620, 904
AjnI	CCWGG	3 cut(s)	343, 355, 582
Alw21I	GWGCWC	1 cut(s)	767
Alw26I	GTCTC	3 cut(s)	89, 467, 554
AlwI	GGATC	2 cut(s)	367, 574
AlwNI	CAGNNNCTG	1 cut(s)	730
AoxI	GGCC	5 cut(s)	417, 439, 447, 592, 855
ApeKI	GCWGC	9 cut(s)	52, 78, 175, 676, 701, 724, 727, 790, 822
AseI	ATTAAT	1 cut(s)	393
AspLEI	GCGC	4 cut(s)	242, 336, 639, 757
AspS9I	GGNCC	5 cut(s)	43, 353, 439, 447, 592
AsuHPI	GGTGA	2 cut(s)	518, 569
AsuII	TTCGAA	1 cut(s)	17
AvaII	GGWCC	2 cut(s)	43, 353
AxyI	CCTNAGG	1 cut(s)	443
BalI	TGGCCA	1 cut(s)	857
BanII	GRGCYC	1 cut(s)	767
Bbv12I	GWGCWC	1 cut(s)	767
BbvI	GCAGC	9 cut(s)	64, 90, 187, 663, 688, 736, 739, 802, 834
BccI	CCATC	3 cut(s)	104, 241, 418
BceAI	ACGGC	1 cut(s)	579
BciT130I	CCWGG	3 cut(s)	345, 357, 584
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	3 cut(s)	89, 467, 554
BfaI	CTAG	3 cut(s)	179, 546, 692
BfuAI	ACCTGC	1 cut(s)	46
Bme1390I	CCNGG	3 cut(s)	345, 357, 584
Bme18I	GGWCC	2 cut(s)	43, 353
BmgT120I	GGNCC	5 cut(s)	43, 353, 439, 447, 592
BmrFI	CCNGG	3 cut(s)	345, 357, 584
BmsI	GCATC	3 cut(s)	205, 631, 703
Bpu10I	CCTNAGC	1 cut(s)	804
Bpu14I	TTCGAA	1 cut(s)	17
BpuEI	CTTGAG	2 cut(s)	68, 815
BsaJI	CCNNGG	3 cut(s)	344, 595, 718
BsaXI	ACNNNNNCTCC	2 cut(s)	771, 801
Bsc4I	CCNNNNNNNGG	5 cut(s)	82, 231, 350, 589, 697
Bse21I	CCTNAGG	1 cut(s)	443
BseBI	CCWGG	3 cut(s)	345, 357, 584
BseDI	CCNNGG	3 cut(s)	344, 595, 718
BseGI	GGATG	4 cut(s)	97, 148, 252, 433
BseLI	CCNNNNNNNGG	5 cut(s)	82, 231, 350, 589, 697
BseMII	CTCAG	1 cut(s)	267
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	9 cut(s)	64, 90, 187, 663, 688, 736, 739, 802, 834
BsgI	GTGCAG	2 cut(s)	662, 809
Bsh1236I	CGCG	4 cut(s)	240, 639, 755, 757
BshFI	GGCC	5 cut(s)	419, 441, 449, 594, 857
BsiHKAI	GWGCWC	1 cut(s)	767
BslI	CCNNNNNNNGG	5 cut(s)	82, 231, 350, 589, 697
BsmAI	GTCTC	3 cut(s)	89, 467, 554
BsmBI	CGTCTC	1 cut(s)	467
BsnI	GGCC	5 cut(s)	419, 441, 449, 594, 857
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	767
Bsp143I	GATC	5 cut(s)	7, 328, 359, 370, 579
BspACI	CCGC	3 cut(s)	76, 634, 757
BspANI	GGCC	5 cut(s)	419, 441, 449, 594, 857
BspCNI	CTCAG	1 cut(s)	266
BspFNI	CGCG	4 cut(s)	240, 639, 755, 757
BspMI	ACCTGC	1 cut(s)	46
BspPI	GGATC	2 cut(s)	367, 574
BspQI	GCTCTTC	1 cut(s)	812
BspT104I	TTCGAA	1 cut(s)	17
BsrBI	CCGCTC	1 cut(s)	634
BssECI	CCNNGG	3 cut(s)	344, 595, 718
BssMI	GATC	5 cut(s)	7, 328, 359, 370, 579
BssT1I	CCWWGG	1 cut(s)	718
Bst2UI	CCWGG	3 cut(s)	345, 357, 584
Bst4CI	ACNGT	3 cut(s)	100, 478, 787
Bst6I	CTCTTC	1 cut(s)	812
BstAPI	GCANNNNNTGC	1 cut(s)	831
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	3 cut(s)	759, 763, 801
BstDEI	CTNAG	3 cut(s)	253, 443, 804
BstDSI	CCRYGG	1 cut(s)	595
BstF5I	GGATG	4 cut(s)	97, 148, 252, 433
BstFNI	CGCG	4 cut(s)	240, 639, 755, 757
BstHHI	GCGC	4 cut(s)	242, 336, 639, 757
BstKTI	GATC	5 cut(s)	10, 331, 362, 373, 582
BstMAI	GTCTC	3 cut(s)	89, 467, 554
BstMBI	GATC	5 cut(s)	7, 328, 359, 370, 579
BstMWI	GCNNNNNNNGC	4 cut(s)	172, 455, 796, 831
BstNI	CCWGG	3 cut(s)	345, 357, 584
BstSCI	CCNGG	3 cut(s)	343, 355, 582
BstUI	CGCG	4 cut(s)	240, 639, 755, 757
BstV1I	GCAGC	9 cut(s)	64, 90, 187, 663, 688, 736, 739, 802, 834
BstXI	CCANNNNNNTGG	1 cut(s)	865
Bsu36I	CCTNAGG	1 cut(s)	443
BsuRI	GGCC	5 cut(s)	419, 441, 449, 594, 857
BtgI	CCRYGG	1 cut(s)	595
BtgZI	GCGATG	1 cut(s)	654
BtsCI	GGATG	4 cut(s)	97, 148, 252, 433
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	3 cut(s)	759, 763, 801
CaiI	CAGNNNCTG	1 cut(s)	730
CfoI	GCGC	4 cut(s)	242, 336, 639, 757
Cfr13I	GGNCC	5 cut(s)	43, 353, 439, 447, 592
Csp6I	GTAC	1 cut(s)	490
CviAII	CATG	5 cut(s)	148, 212, 226, 421, 697
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	3 cut(s)	253, 443, 804
DpnI	GATC	5 cut(s)	9, 330, 361, 372, 581
DpnII	GATC	5 cut(s)	7, 328, 359, 370, 579
DraIII	CACNNNGTG	1 cut(s)	685
EaeI	YGGCCR	1 cut(s)	855
Eam1104I	CTCTTC	1 cut(s)	812
EarI	CTCTTC	1 cut(s)	812
Ecl136II	GAGCTC	1 cut(s)	765
Eco130I	CCWWGG	1 cut(s)	718
Eco24I	GRGCYC	1 cut(s)	767
Eco47I	GGWCC	2 cut(s)	43, 353
Eco53kI	GAGCTC	1 cut(s)	765
Eco57I	CTGAAG	3 cut(s)	103, 369, 398
Eco81I	CCTNAGG	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	765
EcoO109I	RGGNCCY	2 cut(s)	43, 439
EcoRII	CCWGG	3 cut(s)	343, 355, 582
EcoT14I	CCWWGG	1 cut(s)	718
EcoT38I	GRGCYC	1 cut(s)	767
ErhI	CCWWGG	1 cut(s)	718
Esp3I	CGTCTC	1 cut(s)	467
FaeI	CATG	5 cut(s)	151, 215, 229, 424, 700
FaiI	YATR	7 cut(s)	149, 213, 227, 422, 698, 740, 848
FatI	CATG	5 cut(s)	147, 211, 225, 420, 696
FauI	CCCGC	1 cut(s)	750
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	60
FokI	GGATG	4 cut(s)	104, 155, 259, 440
FriOI	GRGCYC	1 cut(s)	767
FspBI	CTAG	3 cut(s)	179, 546, 692
GlaI	GCGC	4 cut(s)	241, 335, 638, 756
HaeIII	GGCC	5 cut(s)	419, 441, 449, 594, 857
HhaI	GCGC	4 cut(s)	242, 336, 639, 757
Hin1II	CATG	5 cut(s)	151, 215, 229, 424, 700
Hin6I	GCGC	4 cut(s)	240, 334, 637, 755
HinP1I	GCGC	4 cut(s)	240, 334, 637, 755
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	2 cut(s)	164, 410
HinfI	GANTC	4 cut(s)	114, 251, 535, 895
HphI	GGTGA	2 cut(s)	518, 569
Hpy166II	GTNNAC	3 cut(s)	61, 353, 517
Hpy188I	TCNGA	9 cut(s)	32, 256, 370, 463, 540, 573, 603, 816, 894
Hpy188III	TCNNGA	5 cut(s)	107, 121, 271, 620, 904
Hpy8I	GTNNAC	3 cut(s)	61, 353, 517
HpyAV	CCTTC	4 cut(s)	133, 477, 505, 643
HpyCH4III	ACNGT	3 cut(s)	100, 478, 787
HpyCH4V	TGCA	5 cut(s)	679, 704, 790, 834, 840
HpyF10VI	GCNNNNNNNGC	4 cut(s)	172, 455, 796, 831
HpyF3I	CTNAG	3 cut(s)	253, 443, 804
Hsp92II	CATG	5 cut(s)	151, 215, 229, 424, 700
HspAI	GCGC	4 cut(s)	240, 334, 637, 755
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	5 cut(s)	7, 328, 359, 370, 579
LguI	GCTCTTC	1 cut(s)	812
LmnI	GCTCC	1 cut(s)	152
Lsp1109I	GCAGC	9 cut(s)	64, 90, 187, 663, 688, 736, 739, 802, 834
LweI	GCATC	3 cut(s)	205, 631, 703
MaeI	CTAG	3 cut(s)	179, 546, 692
MalI	GATC	5 cut(s)	9, 330, 361, 372, 581
MbiI	CCGCTC	1 cut(s)	634
MboI	GATC	5 cut(s)	7, 328, 359, 370, 579
MboII	GAAGA	4 cut(s)	109, 357, 829, 869
MhlI	GDGCHC	1 cut(s)	767
MlsI	TGGCCA	1 cut(s)	857
MluCI	AATT	3 cut(s)	22, 390, 615
MluNI	TGGCCA	1 cut(s)	857
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	1 cut(s)	460
MnlI	CCTC	9 cut(s)	76, 175, 187, 469, 480, 547, 567, 677, 773
Mox20I	TGGCCA	1 cut(s)	857
MscI	TGGCCA	1 cut(s)	857
MseI	TTAA	2 cut(s)	393, 910
Msp20I	TGGCCA	1 cut(s)	857
MspA1I	CMGCKG	1 cut(s)	730
MspR9I	CCNGG	3 cut(s)	345, 357, 584
MvaI	CCWGG	3 cut(s)	345, 357, 584
MvnI	CGCG	4 cut(s)	240, 639, 755, 757
MwoI	GCNNNNNNNGC	4 cut(s)	172, 455, 796, 831
NdeII	GATC	5 cut(s)	7, 328, 359, 370, 579
NlaIII	CATG	5 cut(s)	151, 215, 229, 424, 700
NspV	TTCGAA	1 cut(s)	17
PciSI	GCTCTTC	1 cut(s)	812
PfeI	GAWTC	3 cut(s)	114, 535, 895
PfoI	TCCNGGA	1 cut(s)	582
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PpuMI	RGGWCCY	1 cut(s)	43
PshBI	ATTAAT	1 cut(s)	393
Psp124BI	GAGCTC	1 cut(s)	767
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	3 cut(s)	343, 355, 582
PspGI	CCWGG	3 cut(s)	343, 355, 582
PspPI	GGNCC	5 cut(s)	43, 353, 439, 447, 592
PspPPI	RGGWCCY	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	730
PvuII	CAGCTG	1 cut(s)	730
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
SacI	GAGCTC	1 cut(s)	767
SapI	GCTCTTC	1 cut(s)	812
SaqAI	TTAA	2 cut(s)	393, 910
Sau3AI	GATC	5 cut(s)	7, 328, 359, 370, 579
Sau96I	GGNCC	5 cut(s)	43, 353, 439, 447, 592
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	3 cut(s)	345, 357, 584
SduI	GDGCHC	1 cut(s)	767
SfaNI	GCATC	3 cut(s)	205, 631, 703
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	2 cut(s)	43, 353
SmlI	CTYRAG	2 cut(s)	47, 794
SmoI	CTYRAG	2 cut(s)	47, 794
Sse9I	AATT	3 cut(s)	22, 390, 615
SsiI	CCGC	3 cut(s)	76, 634, 757
SspMI	CTAG	3 cut(s)	179, 546, 692
SstI	GAGCTC	1 cut(s)	767
StyD4I	CCNGG	3 cut(s)	343, 355, 582
StyI	CCWWGG	1 cut(s)	718
TaaI	ACNGT	3 cut(s)	100, 478, 787
TaqI	TCGA	2 cut(s)	17, 373
TasI	AATT	3 cut(s)	22, 390, 615
TauI	GCSGC	1 cut(s)	637
TfiI	GAWTC	3 cut(s)	114, 535, 895
Tru1I	TTAA	2 cut(s)	393, 910
Tru9I	TTAA	2 cut(s)	393, 910
TseI	GCWGC	9 cut(s)	52, 78, 175, 676, 701, 724, 727, 790, 822
TspDTI	ATGAA	4 cut(s)	15, 17, 242, 537
VpaK11BI	GGWCC	2 cut(s)	43, 353
VspI	ATTAAT	1 cut(s)	393
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	3 cut(s)	179, 546, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.