Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005741.1

Orthogroup ID

OG0003204

Physical Location & Seq

Genomic Coordinates Reverse (-)

15568 .. 15810

Gene Structure 243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005741.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

atggttgggatcttgaagatgagttttggatgttcggcgttctttgcaagctgcctagaaagcctaactaacacccaaccacctaaccgcccagcgcctagtcacccgcataggcggcctaggcggccgtctaacctctacccgcccaacctagccgatttggcattcctcgactcggagagctgccgcccatcgcctaggcggccaagttttagaacactgttgtcatgtgatatgtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

80

Amino Acids

9.01

Weight (kDa)

9.57

Isoelectric Point (pI)

103.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11250 AT1G61290 AT1G61290 AT4G03330
fragaria_vesca	FvH4_3g04130 FvH4_6g44820
malus_domestica	MD05G1324600.v1.1 MD10G1302400.v1.1 MD17G1082900.v1.1
prunus_persica	Prupe.3G232300_v2.0.a1 Prupe.4G036000_v2.0.a1
pyrus_communis	pycom05g29880 pycom10g25490
rosa_chinensis	RchiOBHm_Chr2g0162001 RchiOBHm_Chr5g0006581
rosa_laevigata	RLG00000021314 RLG00000031401
rosa_multiflora	Rmu_co8449309.1_g000002 Rmu_co8484739.1_g000001 Rmu_sc0005741.1_g000004 Rmu_sc0008428.1_g000004 Rmu_sc0011154.1_g000007 Rmu_sc0038528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069460 Rroxscaffold_2G00088410
rosa_rugosa	Rorug02G0493900 Rorug04G0422800
rosa_samantha	Rh2AG559800 Rh2BG573200 Rh2CG543400 Rh2DG583000 Rh5AG049900 Rh5BG049200 Rh5CG057600 Rh5DG048600
rosa_wichuraiana	Rw2G046330 Rw5G005000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	88, 107, 115, 124, 143, 187, 202
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	2 cut(s)	125, 203
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	1 cut(s)	16
AluBI	AGCT	2 cut(s)	51, 183
AluI	AGCT	2 cut(s)	51, 183
AlwI	GGATC	1 cut(s)	17
AoxI	GGCC	3 cut(s)	116, 125, 203
ApeKI	GCWGC	2 cut(s)	51, 183
AspA2I	CCTAGG	2 cut(s)	119, 197
AspLEI	GCGC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	95
AvrII	CCTAGG	2 cut(s)	119, 197
BbvI	GCAGC	2 cut(s)	38, 170
BccI	CCATC	1 cut(s)	199
BceAI	ACGGC	1 cut(s)	112
BfaI	CTAG	6 cut(s)	56, 99, 120, 152, 198, 241
BfoI	RGCGCY	1 cut(s)	98
BglI	GCCNNNNNGGC	3 cut(s)	124, 161, 202
BisI	GCNGC	6 cut(s)	52, 116, 125, 184, 187, 203
BlnI	CCTAGG	2 cut(s)	119, 197
BlsI	GCNGC	6 cut(s)	53, 117, 126, 185, 188, 204
BsaJI	CCNNGG	2 cut(s)	119, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
BseDI	CCNNGG	2 cut(s)	119, 197
BseGI	GGATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseX3I	CGGCCG	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	38, 170
BseYI	CCCAGC	1 cut(s)	91
Bsh1285I	CGRYCG	1 cut(s)	128
BshFI	GGCC	3 cut(s)	118, 127, 205
BsiEI	CGRYCG	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmI	GAATGC	1 cut(s)	164
BsnI	GGCC	3 cut(s)	118, 127, 205
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	7 cut(s)	88, 107, 115, 124, 143, 187, 202
BspANI	GGCC	3 cut(s)	118, 127, 205
BspPI	GGATC	1 cut(s)	17
BssECI	CCNNGG	2 cut(s)	119, 197
BssMI	GATC	1 cut(s)	9
BssT1I	CCWWGG	2 cut(s)	119, 197
Bst4CI	ACNGT	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	49
BstF5I	GGATG	1 cut(s)	35
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	9
BstMCI	CGRYCG	1 cut(s)	128
BstMWI	GCNNNNNNNGC	7 cut(s)	44, 60, 115, 121, 124, 161, 202
BstV1I	GCAGC	2 cut(s)	38, 170
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
BstZI	CGGCCG	1 cut(s)	125
BsuRI	GGCC	3 cut(s)	118, 127, 205
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	218
Cac8I	GCNNGC	1 cut(s)	49
CfoI	GCGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	1 cut(s)	228
CviJI	RGCY	7 cut(s)	51, 63, 118, 127, 155, 183, 205
CviKI_1	RGCY	7 cut(s)	51, 63, 118, 127, 155, 183, 205
CviQI	GTAC	1 cut(s)	238
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
EaeI	YGGCCR	2 cut(s)	125, 203
EagI	CGGCCG	1 cut(s)	125
EclXI	CGGCCG	1 cut(s)	125
Eco130I	CCWWGG	2 cut(s)	119, 197
Eco52I	CGGCCG	1 cut(s)	125
EcoT14I	CCWWGG	2 cut(s)	119, 197
ErhI	CCWWGG	2 cut(s)	119, 197
FaeI	CATG	1 cut(s)	231
FaiI	YATR	3 cut(s)	111, 229, 236
FatI	CATG	1 cut(s)	227
FauI	CCCGC	2 cut(s)	114, 150
Fnu4HI	GCNGC	6 cut(s)	52, 116, 125, 184, 187, 203
FokI	GGATG	1 cut(s)	42
Fsp4HI	GCNGC	6 cut(s)	52, 116, 125, 184, 187, 203
FspBI	CTAG	6 cut(s)	56, 99, 120, 152, 198, 241
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	6 cut(s)	52, 116, 125, 184, 187, 203
GsaI	CCCAGC	1 cut(s)	95
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	3 cut(s)	118, 127, 205
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	1 cut(s)	231
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	1 cut(s)	173
HphI	GGTGA	1 cut(s)	95
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	13
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4V	TGCA	1 cut(s)	47
HpyF10VI	GCNNNNNNNGC	7 cut(s)	44, 60, 115, 121, 124, 161, 202
Hsp92II	CATG	1 cut(s)	231
HspAI	GCGC	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	9
LpnPI	CCDG	1 cut(s)	105
Lsp1109I	GCAGC	2 cut(s)	38, 170
MaeI	CTAG	6 cut(s)	56, 99, 120, 152, 198, 241
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	1 cut(s)	28
MflI	RGATCY	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	2 cut(s)	146, 179
Mva1269I	GAATGC	1 cut(s)	164
MwoI	GCNNNNNNNGC	7 cut(s)	44, 60, 115, 121, 124, 161, 202
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	101
PctI	GAATGC	1 cut(s)	164
PkrI	GCNGC	6 cut(s)	53, 117, 126, 185, 188, 204
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PspFI	CCCAGC	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	9
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SatI	GCNGC	6 cut(s)	52, 116, 125, 184, 187, 203
Sau3AI	GATC	1 cut(s)	9
SchI	GAGTC	1 cut(s)	167
SetI	ASST	5 cut(s)	53, 85, 138, 153, 185
SfiI	GGCCNNNNNGGCC	1 cut(s)	124
SsiI	CCGC	7 cut(s)	88, 107, 115, 124, 143, 187, 202
SspMI	CTAG	6 cut(s)	56, 99, 120, 152, 198, 241
StyI	CCWWGG	2 cut(s)	119, 197
TaaI	ACNGT	1 cut(s)	222
TaqI	TCGA	1 cut(s)	171
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	4 cut(s)	118, 127, 189, 205
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	2 cut(s)	51, 183
Tsp45I	GTSAC	1 cut(s)	101
TspRI	CASTG	1 cut(s)	225
XmaJI	CCTAGG	2 cut(s)	119, 197
XspI	CTAG	6 cut(s)	56, 99, 120, 152, 198, 241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.