Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038528.1

Orthogroup ID

OG0003204

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 6398

Gene Structure 6398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038528.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgaacgatctgttttcgaataattcattcagacgatacaaggaccttgagcagcaggtctacattgatgatgtccgcagcgaggcgtgggatgagactgtcaatcttgatggattcttcaggaaagtagagaatgtgaaggatgacatgggagctgtggagaagctttacaagcagctagaggaagcaaatgaggagagcaaacaagtccatgatgccaagtccatgaaagggcttcgcgcaaggatggactcagatgttgagaaagtcttgaaacttgccaaagtcatcaaggagaagctggaaacacttgaactctccaatgctgatcagcgcaaacttcctggcccgcctaggcgcccgcccagcccgcctaggcgcccgcccaacccgcccagcccgccaaggcgcccgcctaaatcttgtccacccaatgcctccgattacccattactcgagtcggcctgctgccgcccagcgcctaggcggccgttttttagactgcaaggattgaacttggagttggtcgtaatggtcctctcacataacgagggtgtcccagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

188

Amino Acids

21.56

Weight (kDa)

8.39

Isoelectric Point (pI)

66.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11250 AT1G61290 AT1G61290 AT4G03330
fragaria_vesca	FvH4_3g04130 FvH4_6g44820
malus_domestica	MD05G1324600.v1.1 MD10G1302400.v1.1 MD17G1082900.v1.1
prunus_persica	Prupe.3G232300_v2.0.a1 Prupe.4G036000_v2.0.a1
pyrus_communis	pycom05g29880 pycom10g25490
rosa_chinensis	RchiOBHm_Chr2g0162001 RchiOBHm_Chr5g0006581
rosa_laevigata	RLG00000021314 RLG00000031401
rosa_multiflora	Rmu_co8449309.1_g000002 Rmu_co8484739.1_g000001 Rmu_sc0005741.1_g000004 Rmu_sc0008428.1_g000004 Rmu_sc0011154.1_g000007 Rmu_sc0038528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069460 Rroxscaffold_2G00088410
rosa_rugosa	Rorug02G0493900 Rorug04G0422800
rosa_samantha	Rh2AG559800 Rh2BG573200 Rh2CG543400 Rh2DG583000 Rh5AG049900 Rh5BG049200 Rh5CG057600 Rh5DG048600
rosa_wichuraiana	Rw2G046330 Rw5G005000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	46
AccB1I	GGYRCC	3 cut(s)	357, 378, 408
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	1 cut(s)	240
AcoI	YGGCCR	1 cut(s)	488
AcuI	CTGAAG	1 cut(s)	103
AcyI	GRCGYC	3 cut(s)	358, 379, 409
AfiI	CCNNNNNNNGG	2 cut(s)	82, 231
AgsI	TTSAA	3 cut(s)	274, 314, 514
AjnI	CCWGG	1 cut(s)	343
AjuI	GAANNNNNNNTTGG	2 cut(s)	506, 538
AluBI	AGCT	4 cut(s)	155, 166, 178, 301
AluI	AGCT	4 cut(s)	155, 166, 178, 301
Alw26I	GTCTC	1 cut(s)	89
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	3 cut(s)	346, 462, 488
ApeKI	GCWGC	4 cut(s)	52, 78, 175, 468
AspA2I	CCTAGG	3 cut(s)	353, 374, 482
AspLEI	GCGC	6 cut(s)	242, 336, 360, 381, 411, 481
AspS9I	GGNCC	3 cut(s)	43, 347, 535
AsuII	TTCGAA	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	455
AvaII	GGWCC	2 cut(s)	43, 535
AvrII	CCTAGG	3 cut(s)	353, 374, 482
BanI	GGYRCC	3 cut(s)	357, 378, 408
BbvI	GCAGC	4 cut(s)	64, 90, 187, 455
BccI	CCATC	2 cut(s)	104, 241
BceAI	ACGGC	1 cut(s)	475
BciT130I	CCWGG	1 cut(s)	345
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	4 cut(s)	179, 354, 375, 483
BfoI	RGCGCY	4 cut(s)	361, 382, 412, 482
BfuAI	ACCTGC	1 cut(s)	46
BglI	GCCNNNNNGGC	1 cut(s)	487
BisI	GCNGC	6 cut(s)	53, 79, 176, 469, 472, 488
BlnI	CCTAGG	3 cut(s)	353, 374, 482
BlsI	GCNGC	6 cut(s)	54, 80, 177, 470, 473, 489
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	2 cut(s)	43, 535
BmeT110I	CYCGRG	1 cut(s)	455
BmgT120I	GGNCC	3 cut(s)	43, 347, 535
BmiI	GGNNCC	3 cut(s)	359, 380, 410
BmrFI	CCNGG	1 cut(s)	345
BmsI	GCATC	1 cut(s)	205
Bpu14I	TTCGAA	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	68
BsaHI	GRCGYC	3 cut(s)	358, 379, 409
BsaJI	CCNNGG	4 cut(s)	353, 374, 404, 482
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 231
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	4 cut(s)	353, 374, 404, 482
BseGI	GGATG	3 cut(s)	97, 148, 252
BseLI	CCNNNNNNNGG	2 cut(s)	82, 231
BseMII	CTCAG	1 cut(s)	267
BseRI	GAGGAG	1 cut(s)	209
BseX3I	CGGCCG	1 cut(s)	488
BseXI	GCAGC	4 cut(s)	64, 90, 187, 455
BseYI	CCCAGC	3 cut(s)	365, 395, 475
Bsh1236I	CGCG	1 cut(s)	240
Bsh1285I	CGRYCG	1 cut(s)	491
BshFI	GGCC	3 cut(s)	348, 464, 490
BshNI	GGYRCC	3 cut(s)	357, 378, 408
BsiEI	CGRYCG	1 cut(s)	491
BsiHKCI	CYCGRG	1 cut(s)	455
BslFI	GGGAC	1 cut(s)	542
BslI	CCNNNNNNNGG	2 cut(s)	82, 231
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	542
BsnI	GGCC	3 cut(s)	348, 464, 490
BsoBI	CYCGRG	1 cut(s)	455
Bsp119I	TTCGAA	1 cut(s)	17
Bsp143I	GATC	2 cut(s)	7, 328
BspANI	GGCC	3 cut(s)	348, 464, 490
BspCNI	CTCAG	1 cut(s)	266
BspFNI	CGCG	1 cut(s)	240
BspLI	GGNNCC	3 cut(s)	359, 380, 410
BspMI	ACCTGC	1 cut(s)	46
BspT104I	TTCGAA	1 cut(s)	17
BspT107I	GGYRCC	3 cut(s)	357, 378, 408
BssECI	CCNNGG	4 cut(s)	353, 374, 404, 482
BssMI	GATC	2 cut(s)	7, 328
BssNI	GRCGYC	3 cut(s)	358, 379, 409
BssT1I	CCWWGG	4 cut(s)	353, 374, 404, 482
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	1 cut(s)	100
BstACI	GRCGYC	3 cut(s)	358, 379, 409
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	7 cut(s)	350, 362, 371, 383, 401, 413, 466
BstDEI	CTNAG	1 cut(s)	253
BstF5I	GGATG	3 cut(s)	97, 148, 252
BstFNI	CGCG	1 cut(s)	240
BstH2I	RGCGCY	4 cut(s)	361, 382, 412, 482
BstHHI	GCGC	6 cut(s)	242, 336, 360, 381, 411, 481
BstKTI	GATC	2 cut(s)	10, 331
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	2 cut(s)	7, 328
BstMCI	CGRYCG	1 cut(s)	491
BstMWI	GCNNNNNNNGC	6 cut(s)	172, 366, 370, 391, 400, 487
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	343
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	4 cut(s)	64, 90, 187, 455
BstZI	CGGCCG	1 cut(s)	488
BsuRI	GGCC	3 cut(s)	348, 464, 490
BtsCI	GGATG	3 cut(s)	97, 148, 252
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	7 cut(s)	350, 362, 371, 383, 401, 413, 466
CfoI	GCGC	6 cut(s)	242, 336, 360, 381, 411, 481
Cfr13I	GGNCC	3 cut(s)	43, 347, 535
CviAII	CATG	3 cut(s)	148, 212, 226
DdeI	CTNAG	1 cut(s)	253
DinI	GGCGCC	3 cut(s)	359, 380, 410
DpnI	GATC	2 cut(s)	9, 330
DpnII	GATC	2 cut(s)	7, 328
EaeI	YGGCCR	1 cut(s)	488
EagI	CGGCCG	1 cut(s)	488
EclXI	CGGCCG	1 cut(s)	488
Eco130I	CCWWGG	4 cut(s)	353, 374, 404, 482
Eco47I	GGWCC	2 cut(s)	43, 535
Eco52I	CGGCCG	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	455
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	4 cut(s)	353, 374, 404, 482
EgeI	GGCGCC	3 cut(s)	359, 380, 410
EheI	GGCGCC	3 cut(s)	359, 380, 410
ErhI	CCWWGG	4 cut(s)	353, 374, 404, 482
FaeI	CATG	3 cut(s)	151, 215, 229
FaiI	YATR	4 cut(s)	149, 213, 227, 546
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	3 cut(s)	147, 211, 225
FauI	CCCGC	7 cut(s)	357, 369, 378, 390, 399, 408, 420
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	6 cut(s)	53, 79, 176, 469, 472, 488
FokI	GGATG	3 cut(s)	104, 155, 259
Fsp4HI	GCNGC	6 cut(s)	53, 79, 176, 469, 472, 488
FspBI	CTAG	4 cut(s)	179, 354, 375, 483
GlaI	GCGC	6 cut(s)	241, 335, 359, 380, 410, 480
GluI	GCNGC	6 cut(s)	53, 79, 176, 469, 472, 488
GsaI	CCCAGC	3 cut(s)	369, 399, 479
HaeII	RGCGCY	4 cut(s)	361, 382, 412, 482
HaeIII	GGCC	3 cut(s)	348, 464, 490
HhaI	GCGC	6 cut(s)	242, 336, 360, 381, 411, 481
Hin1I	GRCGYC	3 cut(s)	358, 379, 409
Hin1II	CATG	3 cut(s)	151, 215, 229
Hin6I	GCGC	6 cut(s)	240, 334, 358, 379, 409, 479
HinP1I	GCGC	6 cut(s)	240, 334, 358, 379, 409, 479
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	3 cut(s)	114, 251, 458
Hpy166II	GTNNAC	2 cut(s)	61, 428
Hpy188I	TCNGA	3 cut(s)	32, 256, 442
Hpy188III	TCNNGA	3 cut(s)	107, 121, 271
Hpy8I	GTNNAC	2 cut(s)	61, 428
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	505
HpyF10VI	GCNNNNNNNGC	6 cut(s)	172, 366, 370, 391, 400, 487
HpyF3I	CTNAG	1 cut(s)	253
Hsp92I	GRCGYC	3 cut(s)	358, 379, 409
Hsp92II	CATG	3 cut(s)	151, 215, 229
HspAI	GCGC	6 cut(s)	240, 334, 358, 379, 409, 479
KasI	GGCGCC	3 cut(s)	357, 378, 408
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	7, 328
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	9 cut(s)	41, 106, 287, 330, 357, 379, 409, 478, 489
Lsp1109I	GCAGC	4 cut(s)	64, 90, 187, 455
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	4 cut(s)	179, 354, 375, 483
MalI	GATC	2 cut(s)	9, 330
MboI	GATC	2 cut(s)	7, 328
MboII	GAAGA	1 cut(s)	109
MluCI	AATT	1 cut(s)	22
Mly113I	GGCGCC	3 cut(s)	358, 379, 409
MlyI	GAGTC	2 cut(s)	245, 467
MnlI	CCTC	6 cut(s)	76, 175, 187, 448, 544, 548
MspR9I	CCNGG	1 cut(s)	345
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	6 cut(s)	172, 366, 370, 391, 400, 487
NarI	GGCGCC	3 cut(s)	358, 379, 409
NdeII	GATC	2 cut(s)	7, 328
NlaIII	CATG	3 cut(s)	151, 215, 229
NlaIV	GGNNCC	3 cut(s)	359, 380, 410
NspV	TTCGAA	1 cut(s)	17
PaeR7I	CTCGAG	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	6 cut(s)	54, 80, 177, 470, 473, 489
PleI	GAGTC	2 cut(s)	245, 466
PluTI	GGCGCC	3 cut(s)	361, 382, 412
PpsI	GAGTC	2 cut(s)	245, 466
PpuMI	RGGWCCY	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	343
PspFI	CCCAGC	3 cut(s)	365, 395, 475
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	3 cut(s)	359, 380, 410
PspPI	GGNCC	3 cut(s)	43, 347, 535
PspPPI	RGGWCCY	1 cut(s)	43
PspXI	VCTCGAGB	1 cut(s)	455
SatI	GCNGC	6 cut(s)	53, 79, 176, 469, 472, 488
Sau3AI	GATC	2 cut(s)	7, 328
Sau96I	GGNCC	3 cut(s)	43, 347, 535
SchI	GAGTC	2 cut(s)	245, 467
ScrFI	CCNGG	1 cut(s)	345
SetI	ASST	6 cut(s)	48, 60, 157, 168, 180, 303
SfaNI	GCATC	1 cut(s)	205
SfoI	GGCGCC	3 cut(s)	359, 380, 410
Sfr274I	CTCGAG	1 cut(s)	455
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	2 cut(s)	43, 535
SlaI	CTCGAG	1 cut(s)	455
SmlI	CTYRAG	2 cut(s)	47, 455
SmoI	CTYRAG	2 cut(s)	47, 455
Sse9I	AATT	1 cut(s)	22
SspDI	GGCGCC	3 cut(s)	357, 378, 408
SspMI	CTAG	4 cut(s)	179, 354, 375, 483
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	4 cut(s)	353, 374, 404, 482
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	2 cut(s)	17, 456
TasI	AATT	1 cut(s)	22
TauI	GCSGC	2 cut(s)	474, 490
TfiI	GAWTC	1 cut(s)	114
TseI	GCWGC	4 cut(s)	52, 78, 175, 468
TspDTI	ATGAA	3 cut(s)	15, 17, 242
VpaK11BI	GGWCC	2 cut(s)	43, 535
XhoI	CTCGAG	1 cut(s)	455
XmaJI	CCTAGG	3 cut(s)	353, 374, 482
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	4 cut(s)	179, 354, 375, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.