Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8449309.1

Orthogroup ID

OG0003204

Physical Location & Seq

Genomic Coordinates Reverse (-)

1139 .. 1630

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8449309.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgatggatgattttcagggcctaagggccaaaatagcctctgaatacaaagagacagttggaaggaggtacttcacaataacaggtgagaaggtcaacaatgaaatgattgagaatctgattgctagtggagagggtgagacattggttcagagggcgatccaggaacagggccgtggtcagattttggacacaattcaagaaatccaagagcggcgcgatgctgtgaaggagattgagcagggcctcattgagctgcaccaagtgttcctagacatggctgcattggttgatgcccaagggcagcagctgaatgacatagagagccaagtcgcgcgggcgagctcgtttgttaggcgaggaactgtgcagcttgagcaagctaaggagtatcagaagagcagcaggaagtgcatttgcattggcatagttctggccatttgtttggttatcattcttctttttcctattctgattcacttcaagagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

163

Amino Acids

18.44

Weight (kDa)

5.3

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11250 AT1G61290 AT1G61290 AT4G03330
fragaria_vesca	FvH4_3g04130 FvH4_6g44820
malus_domestica	MD05G1324600.v1.1 MD10G1302400.v1.1 MD17G1082900.v1.1
prunus_persica	Prupe.3G232300_v2.0.a1 Prupe.4G036000_v2.0.a1
pyrus_communis	pycom05g29880 pycom10g25490
rosa_chinensis	RchiOBHm_Chr2g0162001 RchiOBHm_Chr5g0006581
rosa_laevigata	RLG00000021314 RLG00000031401
rosa_multiflora	Rmu_co8449309.1_g000002 Rmu_co8484739.1_g000001 Rmu_sc0005741.1_g000004 Rmu_sc0008428.1_g000004 Rmu_sc0011154.1_g000007 Rmu_sc0038528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069460 Rroxscaffold_2G00088410
rosa_rugosa	Rorug02G0493900 Rorug04G0422800
rosa_samantha	Rh2AG559800 Rh2BG573200 Rh2CG543400 Rh2DG583000 Rh5AG049900 Rh5BG049200 Rh5CG057600 Rh5DG048600
rosa_wichuraiana	Rw2G046330 Rw5G005000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	214
AccII	CGCG	3 cut(s)	219, 335, 337
AciI	CCGC	2 cut(s)	214, 337
AclWI	GGATC	1 cut(s)	154
AcoI	YGGCCR	1 cut(s)	435
AdeI	CACNNNGTG	1 cut(s)	265
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	2 cut(s)	169, 277
AgsI	TTSAA	2 cut(s)	200, 484
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	5 cut(s)	256, 310, 345, 373, 383
AluI	AGCT	5 cut(s)	256, 310, 345, 373, 383
Alw21I	GWGCWC	1 cut(s)	347
Alw26I	GTCTC	2 cut(s)	47, 134
AlwI	GGATC	1 cut(s)	154
AlwNI	CAGNNNCTG	1 cut(s)	310
AoxI	GGCC	5 cut(s)	19, 27, 172, 244, 435
ApeKI	GCWGC	6 cut(s)	256, 281, 304, 307, 370, 402
AspLEI	GCGC	2 cut(s)	219, 337
AspS9I	GGNCC	4 cut(s)	19, 27, 172, 244
AsuHPI	GGTGA	2 cut(s)	98, 149
AxyI	CCTNAGG	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	347
BbvI	GCAGC	6 cut(s)	243, 268, 316, 319, 382, 414
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	1 cut(s)	164
BcoDI	GTCTC	2 cut(s)	47, 134
BfaI	CTAG	2 cut(s)	126, 272
BisI	GCNGC	7 cut(s)	215, 257, 282, 305, 308, 371, 403
BlsI	GCNGC	7 cut(s)	216, 258, 283, 306, 309, 372, 404
Bme1390I	CCNGG	1 cut(s)	164
BmgT120I	GGNCC	4 cut(s)	19, 27, 172, 244
BmrFI	CCNGG	1 cut(s)	164
BmsI	GCATC	2 cut(s)	211, 283
Bpu10I	CCTNAGC	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	175, 298
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 277
Bse21I	CCTNAGG	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	2 cut(s)	175, 298
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	2 cut(s)	169, 277
BseXI	GCAGC	6 cut(s)	243, 268, 316, 319, 382, 414
BsgI	GTGCAG	2 cut(s)	242, 389
Bsh1236I	CGCG	3 cut(s)	219, 335, 337
BshFI	GGCC	5 cut(s)	21, 29, 174, 246, 437
BsiHKAI	GWGCWC	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	169, 277
BsmAI	GTCTC	2 cut(s)	47, 134
BsnI	GGCC	5 cut(s)	21, 29, 174, 246, 437
Bsp1286I	GDGCHC	1 cut(s)	347
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	2 cut(s)	214, 337
BspANI	GGCC	5 cut(s)	21, 29, 174, 246, 437
BspFNI	CGCG	3 cut(s)	219, 335, 337
BspPI	GGATC	1 cut(s)	154
BspQI	GCTCTTC	1 cut(s)	392
BsrBI	CCGCTC	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	175, 298
BssMI	GATC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	298
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	2 cut(s)	58, 367
Bst6I	CTCTTC	1 cut(s)	392
BstAPI	GCANNNNNTGC	1 cut(s)	411
BstC8I	GCNNGC	3 cut(s)	339, 343, 381
BstDEI	CTNAG	2 cut(s)	23, 384
BstDSI	CCRYGG	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	13
BstFNI	CGCG	3 cut(s)	219, 335, 337
BstHHI	GCGC	2 cut(s)	219, 337
BstKTI	GATC	1 cut(s)	162
BstMAI	GTCTC	2 cut(s)	47, 134
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 376, 411
BstNI	CCWGG	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	162
BstUI	CGCG	3 cut(s)	219, 335, 337
BstV1I	GCAGC	6 cut(s)	243, 268, 316, 319, 382, 414
BstXI	CCANNNNNNTGG	1 cut(s)	445
Bsu36I	CCTNAGG	1 cut(s)	23
BsuRI	GGCC	5 cut(s)	21, 29, 174, 246, 437
BtgI	CCRYGG	1 cut(s)	175
BtgZI	GCGATG	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	13
Cac8I	GCNNGC	3 cut(s)	339, 343, 381
CaiI	CAGNNNCTG	1 cut(s)	310
CfoI	GCGC	2 cut(s)	219, 337
Cfr13I	GGNCC	4 cut(s)	19, 27, 172, 244
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	1 cut(s)	277
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	2 cut(s)	23, 384
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
DraIII	CACNNNGTG	1 cut(s)	265
EaeI	YGGCCR	1 cut(s)	435
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
Ecl136II	GAGCTC	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	347
Eco53kI	GAGCTC	1 cut(s)	345
Eco81I	CCTNAGG	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	345
EcoO109I	RGGNCCY	2 cut(s)	19, 244
EcoRII	CCWGG	1 cut(s)	162
EcoT14I	CCWWGG	1 cut(s)	298
EcoT38I	GRGCYC	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	1 cut(s)	280
FaiI	YATR	3 cut(s)	278, 320, 428
FatI	CATG	1 cut(s)	276
FauI	CCCGC	1 cut(s)	330
Fnu4HI	GCNGC	7 cut(s)	215, 257, 282, 305, 308, 371, 403
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	347
Fsp4HI	GCNGC	7 cut(s)	215, 257, 282, 305, 308, 371, 403
FspBI	CTAG	2 cut(s)	126, 272
GlaI	GCGC	2 cut(s)	218, 336
GluI	GCNGC	7 cut(s)	215, 257, 282, 305, 308, 371, 403
HaeIII	GGCC	5 cut(s)	21, 29, 174, 246, 437
HhaI	GCGC	2 cut(s)	219, 337
Hin1II	CATG	1 cut(s)	280
Hin6I	GCGC	2 cut(s)	217, 335
HinP1I	GCGC	2 cut(s)	217, 335
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	2 cut(s)	115, 475
HphI	GGTGA	2 cut(s)	98, 149
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	6 cut(s)	43, 120, 153, 183, 396, 474
Hpy188III	TCNNGA	2 cut(s)	200, 484
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	3 cut(s)	57, 85, 223
HpyCH4III	ACNGT	2 cut(s)	58, 367
HpyCH4V	TGCA	5 cut(s)	259, 284, 370, 414, 420
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 376, 411
HpyF3I	CTNAG	2 cut(s)	23, 384
Hsp92II	CATG	1 cut(s)	280
HspAI	GCGC	2 cut(s)	217, 335
Kzo9I	GATC	1 cut(s)	159
LguI	GCTCTTC	1 cut(s)	392
LpnPI	CCDG	8 cut(s)	2, 69, 149, 155, 176, 227, 391, 419
Lsp1109I	GCAGC	6 cut(s)	243, 268, 316, 319, 382, 414
LweI	GCATC	2 cut(s)	211, 283
MaeI	CTAG	2 cut(s)	126, 272
MalI	GATC	1 cut(s)	161
MbiI	CCGCTC	1 cut(s)	214
MboI	GATC	1 cut(s)	159
MboII	GAAGA	2 cut(s)	409, 449
MhlI	GDGCHC	1 cut(s)	347
MlsI	TGGCCA	1 cut(s)	437
MluCI	AATT	1 cut(s)	195
MluNI	TGGCCA	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	6 cut(s)	49, 60, 127, 147, 257, 353
Mox20I	TGGCCA	1 cut(s)	437
MscI	TGGCCA	1 cut(s)	437
MseI	TTAA	1 cut(s)	490
Msp20I	TGGCCA	1 cut(s)	437
MspA1I	CMGCKG	1 cut(s)	310
MspR9I	CCNGG	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	164
MvnI	CGCG	3 cut(s)	219, 335, 337
MwoI	GCNNNNNNNGC	3 cut(s)	35, 376, 411
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	392
PfeI	GAWTC	2 cut(s)	115, 475
PfoI	TCCNGGA	1 cut(s)	162
PkrI	GCNGC	7 cut(s)	216, 258, 283, 306, 309, 372, 404
Psp124BI	GAGCTC	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	162
PspPI	GGNCC	4 cut(s)	19, 27, 172, 244
PstNI	CAGNNNCTG	1 cut(s)	310
PvuII	CAGCTG	1 cut(s)	310
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
SacI	GAGCTC	1 cut(s)	347
SapI	GCTCTTC	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	490
SatI	GCNGC	7 cut(s)	215, 257, 282, 305, 308, 371, 403
Sau3AI	GATC	1 cut(s)	159
Sau96I	GGNCC	4 cut(s)	19, 27, 172, 244
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	347
SetI	ASST	8 cut(s)	71, 88, 96, 258, 312, 347, 375, 385
SfaNI	GCATC	2 cut(s)	211, 283
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	1 cut(s)	195
SsiI	CCGC	2 cut(s)	214, 337
SspMI	CTAG	2 cut(s)	126, 272
SstI	GAGCTC	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	2 cut(s)	58, 367
TasI	AATT	1 cut(s)	195
TauI	GCSGC	1 cut(s)	217
TfiI	GAWTC	2 cut(s)	115, 475
Tru1I	TTAA	1 cut(s)	490
Tru9I	TTAA	1 cut(s)	490
TseI	GCWGC	6 cut(s)	256, 281, 304, 307, 370, 402
TspDTI	ATGAA	1 cut(s)	117
XspI	CTAG	2 cut(s)	126, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.