Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003204

Physical Location & Seq

Genomic Coordinates Forward (+)

22898573 .. 22899490

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G232300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGAACGATCTGTTTTTGAGCGATTCGTTCAAAAGATACAAGGACCTCGAACACCAAGTCTGCATTGATGATATGCAGGCAGGTGGTGAGGCCTGGAAAGAGACTGTCAATCTTGATGGATTCTTTAAGGAGATAGAGAATGTCAAACATGACATGGGAGCTGTAGTGCAGCTTTACAAGCGGTTACAGGAAGCCAATAAGGAGAGCAAACTCATCCACGATGCCAAATCCATGAAAGAGCTTAGCGCCAGGATGGATTCTGATGTTGAGCAGGTATTGAAGCTGGTTAAAATCATCAAGGGGACGCTGGAAACACTTGAACTCTCCAATGCTGATCAGCGTAAACTTCCCAGCTGTGGAGCAGGGTCATCTTCTGATCGAACAAGAACTTCAGTACTTAGTGGCTTAGCAAAGAAGTTCAAGGACATGATGGATGACTTTCAAGGCCTCAGAACCAAAATGGGATCCGAATACAAAGAGACAGTTCAAAGGAGGTACTTCACAATAACAGGTGAGAAGGCCAATGAAGAAATGATTGAGAATTTGATATCGAGTGGAGCGAGTGAGACATTGCTTCAGAAGGCAATTGAGGAGCAGGGTCGTGGCCAAGTTTTGGACACTGTTCAAGAGATCCAAGAGCGGCATGATGCCGTGAAGGAGATGGAGAAGAGCCTCATTGAGCTCCACCAAGTGTTCCTAGACATGGCTGCACTGGTTGATGCACAAGGGCAGCAGTTGAATGACATAGAGAGCCATGTGGCACGTGCCAATTCGTTCGTCAGGCGAGGAAATCTGCAGCTTGAGGTAGCTAAGGACTATCAGAAGAATAACAGGAAGTGGGCTTGCATTGCCATAGTTATTGGCACCAGTGCTGTTATCATTCTTCTTTTACCTGTTTATCTTCACTTCAAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

306

Amino Acids

34.55

Weight (kDa)

5.76

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11250 AT1G61290 AT1G61290 AT4G03330
fragaria_vesca	FvH4_3g04130 FvH4_6g44820
malus_domestica	MD05G1324600.v1.1 MD10G1302400.v1.1 MD17G1082900.v1.1
prunus_persica	Prupe.3G232300_v2.0.a1 Prupe.4G036000_v2.0.a1
pyrus_communis	pycom05g29880 pycom10g25490
rosa_chinensis	RchiOBHm_Chr2g0162001 RchiOBHm_Chr5g0006581
rosa_laevigata	RLG00000021314 RLG00000031401
rosa_multiflora	Rmu_co8449309.1_g000002 Rmu_co8484739.1_g000001 Rmu_sc0005741.1_g000004 Rmu_sc0008428.1_g000004 Rmu_sc0011154.1_g000007 Rmu_sc0038528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069460 Rroxscaffold_2G00088410
rosa_rugosa	Rorug02G0493900 Rorug04G0422800
rosa_samantha	Rh2AG559800 Rh2BG573200 Rh2CG543400 Rh2DG583000 Rh5AG049900 Rh5BG049200 Rh5CG057600 Rh5DG048600
rosa_wichuraiana	Rw2G046330 Rw5G005000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	71
Acc36I	ACCTGC	2 cut(s)	71, 262
AccB1I	GGYRCC	1 cut(s)	863
AccB7I	CCANNNNNTGG	1 cut(s)	613
AccBSI	CCGCTC	1 cut(s)	640
AciI	CCGC	2 cut(s)	181, 640
AclWI	GGATC	3 cut(s)	459, 472, 625
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	1 cut(s)	541
AcuI	CTGAAG	2 cut(s)	375, 560
AcvI	CACGTG	1 cut(s)	764
AdeI	CACNNNGTG	1 cut(s)	691
AfaI	GTAC	2 cut(s)	396, 497
AfiI	CCNNNNNNNGG	3 cut(s)	356, 613, 703
AgsI	TTSAA	9 cut(s)	31, 280, 320, 421, 443, 488, 626, 739, 910
AjnI	CCWGG	2 cut(s)	92, 248
AluBI	AGCT	8 cut(s)	161, 172, 241, 283, 354, 682, 799, 809
AluI	AGCT	8 cut(s)	161, 172, 241, 283, 354, 682, 799, 809
Alw21I	GWGCWC	1 cut(s)	684
Alw26I	GTCTC	3 cut(s)	95, 473, 560
AlwI	GGATC	3 cut(s)	459, 472, 625
AoxI	GGCC	4 cut(s)	90, 445, 519, 604
ApeKI	GCWGC	4 cut(s)	169, 707, 730, 796
ApoI	RAATTY	1 cut(s)	541
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	43
AsuHPI	GGTGA	2 cut(s)	98, 524
AvaII	GGWCC	1 cut(s)	43
BalI	TGGCCA	1 cut(s)	606
BamHI	GGATCC	1 cut(s)	464
BanI	GGYRCC	1 cut(s)	863
BanII	GRGCYC	1 cut(s)	684
BbrPI	CACGTG	1 cut(s)	764
Bbv12I	GWGCWC	1 cut(s)	684
BbvI	GCAGC	4 cut(s)	181, 694, 742, 808
BccI	CCATC	4 cut(s)	110, 247, 424, 655
BceAI	ACGGC	1 cut(s)	635
BciT130I	CCWGG	2 cut(s)	94, 250
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	3 cut(s)	95, 473, 560
BfaI	CTAG	1 cut(s)	698
BfmI	CTRYAG	2 cut(s)	162, 794
BfoI	RGCGCY	1 cut(s)	249
BfuAI	ACCTGC	2 cut(s)	71, 262
BisI	GCNGC	5 cut(s)	170, 641, 708, 731, 797
BlpI	GCTNAGC	2 cut(s)	242, 406
BlsI	GCNGC	5 cut(s)	171, 642, 709, 732, 798
BmcAI	AGTACT	1 cut(s)	396
Bme1390I	CCNGG	2 cut(s)	94, 250
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	2 cut(s)	466, 865
BmrFI	CCNGG	2 cut(s)	94, 250
BmsI	GCATC	3 cut(s)	211, 637, 709
Bpu10I	CCTNAGC	1 cut(s)	810
Bpu1102I	GCTNAGC	2 cut(s)	242, 406
BpuEI	CTTGAG	1 cut(s)	821
BsaAI	YACGTR	1 cut(s)	764
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	3 cut(s)	356, 613, 703
Bse1I	ACTGG	2 cut(s)	717, 867
Bse3DI	GCAATG	2 cut(s)	569, 846
BseBI	CCWGG	2 cut(s)	94, 250
BseGI	GGATG	3 cut(s)	213, 258, 439
BseLI	CCNNNNNNNGG	3 cut(s)	356, 613, 703
BseMI	GCAATG	2 cut(s)	569, 846
BseMII	CTCAG	1 cut(s)	463
BseNI	ACTGG	2 cut(s)	717, 867
BseRI	GAGGAG	1 cut(s)	605
BseXI	GCAGC	4 cut(s)	181, 694, 742, 808
BseYI	CCCAGC	1 cut(s)	350
BsgI	GTGCAG	2 cut(s)	188, 693
BshFI	GGCC	4 cut(s)	92, 447, 521, 606
BshNI	GGYRCC	1 cut(s)	863
BsiHKAI	GWGCWC	1 cut(s)	684
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	3 cut(s)	356, 613, 703
BsmAI	GTCTC	3 cut(s)	95, 473, 560
BsmFI	GGGAC	1 cut(s)	316
BsnI	GGCC	4 cut(s)	92, 447, 521, 606
Bsp1286I	GDGCHC	1 cut(s)	684
Bsp143I	GATC	5 cut(s)	7, 334, 376, 464, 630
Bsp1720I	GCTNAGC	2 cut(s)	242, 406
BspACI	CCGC	2 cut(s)	181, 640
BspANI	GGCC	4 cut(s)	92, 447, 521, 606
BspCNI	CTCAG	1 cut(s)	462
BspLI	GGNNCC	2 cut(s)	466, 865
BspMAI	CTGCAG	1 cut(s)	798
BspMI	ACCTGC	2 cut(s)	71, 262
BspPI	GGATC	3 cut(s)	459, 472, 625
BspQI	GCTCTTC	1 cut(s)	662
BspT107I	GGYRCC	1 cut(s)	863
BsrBI	CCGCTC	1 cut(s)	640
BsrDI	GCAATG	2 cut(s)	569, 846
BsrI	ACTGG	2 cut(s)	717, 867
BssMI	GATC	5 cut(s)	7, 334, 376, 464, 630
Bst2UI	CCWGG	2 cut(s)	94, 250
Bst4CI	ACNGT	3 cut(s)	106, 484, 622
Bst6I	CTCTTC	1 cut(s)	662
BstBAI	YACGTR	1 cut(s)	764
BstC8I	GCNNGC	2 cut(s)	78, 844
BstDEI	CTNAG	5 cut(s)	242, 398, 406, 449, 810
BstF5I	GGATG	3 cut(s)	213, 258, 439
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	5 cut(s)	10, 337, 379, 467, 633
BstMAI	GTCTC	3 cut(s)	95, 473, 560
BstMBI	GATC	5 cut(s)	7, 334, 376, 464, 630
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 848
BstNI	CCWGG	2 cut(s)	94, 250
BstSCI	CCNGG	2 cut(s)	92, 248
BstSFI	CTRYAG	2 cut(s)	162, 794
BstV1I	GCAGC	4 cut(s)	181, 694, 742, 808
BstX2I	RGATCY	2 cut(s)	464, 630
BstYI	RGATCY	2 cut(s)	464, 630
BsuRI	GGCC	4 cut(s)	92, 447, 521, 606
BtsCI	GGATG	3 cut(s)	213, 258, 439
BtsIMutI	CAGTG	3 cut(s)	618, 710, 874
BveI	ACCTGC	2 cut(s)	71, 262
Cac8I	GCNNGC	2 cut(s)	78, 844
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	43
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	2 cut(s)	395, 496
CviAII	CATG	7 cut(s)	149, 154, 232, 427, 644, 703, 755
CviQI	GTAC	2 cut(s)	395, 496
DdeI	CTNAG	5 cut(s)	242, 398, 406, 449, 810
DpnI	GATC	5 cut(s)	9, 336, 378, 466, 632
DpnII	GATC	5 cut(s)	7, 334, 376, 464, 630
DraIII	CACNNNGTG	1 cut(s)	691
EaeI	YGGCCR	1 cut(s)	604
Eam1104I	CTCTTC	1 cut(s)	662
EarI	CTCTTC	1 cut(s)	662
Ecl136II	GAGCTC	1 cut(s)	682
Eco147I	AGGCCT	2 cut(s)	92, 447
Eco24I	GRGCYC	1 cut(s)	684
Eco32I	GATATC	1 cut(s)	549
Eco47I	GGWCC	1 cut(s)	43
Eco53kI	GAGCTC	1 cut(s)	682
Eco57I	CTGAAG	2 cut(s)	375, 560
Eco72I	CACGTG	1 cut(s)	764
EcoICRI	GAGCTC	1 cut(s)	682
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	92, 248
EcoRV	GATATC	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	684
FaeI	CATG	7 cut(s)	152, 157, 235, 430, 647, 706, 758
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	7 cut(s)	148, 153, 231, 426, 643, 702, 754
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	5 cut(s)	170, 641, 708, 731, 797
FokI	GGATG	3 cut(s)	200, 265, 446
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	5 cut(s)	170, 641, 708, 731, 797
FspBI	CTAG	1 cut(s)	698
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	5 cut(s)	170, 641, 708, 731, 797
GsaI	CCCAGC	1 cut(s)	354
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	4 cut(s)	92, 447, 521, 606
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	7 cut(s)	152, 157, 235, 430, 647, 706, 758
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HinfI	GANTC	3 cut(s)	23, 120, 257
HphI	GGTGA	2 cut(s)	98, 524
Hpy166II	GTNNAC	1 cut(s)	344
Hpy188I	TCNGA	6 cut(s)	262, 376, 452, 469, 579, 822
Hpy188III	TCNNGA	3 cut(s)	113, 626, 910
Hpy8I	GTNNAC	1 cut(s)	344
HpyAV	CCTTC	3 cut(s)	511, 574, 649
HpyCH4III	ACNGT	3 cut(s)	106, 484, 622
HpyCH4IV	ACGT	1 cut(s)	763
HpyCH4V	TGCA	7 cut(s)	63, 76, 169, 710, 722, 796, 846
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 848
HpyF3I	CTNAG	5 cut(s)	242, 398, 406, 449, 810
HpySE526I	ACGT	1 cut(s)	763
Hsp92II	CATG	7 cut(s)	152, 157, 235, 430, 647, 706, 758
HspAI	GCGC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	5 cut(s)	7, 334, 376, 464, 630
LguI	GCTCTTC	1 cut(s)	662
LmnI	GCTCC	5 cut(s)	158, 359, 557, 592, 687
Lsp1109I	GCAGC	4 cut(s)	181, 694, 742, 808
LweI	GCATC	3 cut(s)	211, 637, 709
MaeI	CTAG	1 cut(s)	698
MaeII	ACGT	1 cut(s)	763
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	5 cut(s)	9, 336, 378, 466, 632
MbiI	CCGCTC	1 cut(s)	640
MboI	GATC	5 cut(s)	7, 334, 376, 464, 630
MboII	GAAGA	6 cut(s)	363, 539, 679, 835, 875, 893
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	2 cut(s)	464, 630
MhlI	GDGCHC	1 cut(s)	684
MlsI	TGGCCA	1 cut(s)	606
MluCI	AATT	3 cut(s)	541, 585, 769
MluNI	TGGCCA	1 cut(s)	606
MnlI	CCTC	8 cut(s)	56, 82, 458, 486, 583, 683, 779, 796
Mox20I	TGGCCA	1 cut(s)	606
MscI	TGGCCA	1 cut(s)	606
MseI	TTAA	3 cut(s)	126, 288, 916
Msp20I	TGGCCA	1 cut(s)	606
MspA1I	CMGCKG	1 cut(s)	354
MspR9I	CCNGG	2 cut(s)	94, 250
MunI	CAATTG	1 cut(s)	585
MvaI	CCWGG	2 cut(s)	94, 250
MwoI	GCNNNNNNNGC	2 cut(s)	178, 848
NdeII	GATC	5 cut(s)	7, 334, 376, 464, 630
NlaIII	CATG	7 cut(s)	152, 157, 235, 430, 647, 706, 758
NlaIV	GGNNCC	2 cut(s)	466, 865
PaqCI	CACCTGC	1 cut(s)	71
PceI	AGGCCT	2 cut(s)	92, 447
PciSI	GCTCTTC	1 cut(s)	662
PcsI	WCGNNNNNNNCGW	1 cut(s)	557
PfeI	GAWTC	3 cut(s)	23, 120, 257
PflMI	CCANNNNNTGG	1 cut(s)	613
PkrI	GCNGC	5 cut(s)	171, 642, 709, 732, 798
PmaCI	CACGTG	1 cut(s)	764
PmlI	CACGTG	1 cut(s)	764
Ppu21I	YACGTR	1 cut(s)	764
PpuMI	RGGWCCY	1 cut(s)	43
Psp124BI	GAGCTC	1 cut(s)	684
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	2 cut(s)	92, 248
PspCI	CACGTG	1 cut(s)	764
PspFI	CCCAGC	1 cut(s)	350
PspGI	CCWGG	2 cut(s)	92, 248
PspN4I	GGNNCC	2 cut(s)	466, 865
PspPI	GGNCC	1 cut(s)	43
PspPPI	RGGWCCY	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	798
PsuI	RGATCY	2 cut(s)	464, 630
PvuII	CAGCTG	1 cut(s)	354
RsaI	GTAC	2 cut(s)	396, 497
RsaNI	GTAC	2 cut(s)	395, 496
SacI	GAGCTC	1 cut(s)	684
SapI	GCTCTTC	1 cut(s)	662
SaqAI	TTAA	3 cut(s)	126, 288, 916
SatI	GCNGC	5 cut(s)	170, 641, 708, 731, 797
Sau3AI	GATC	5 cut(s)	7, 334, 376, 464, 630
Sau96I	GGNCC	1 cut(s)	43
ScaI	AGTACT	1 cut(s)	396
ScrFI	CCNGG	2 cut(s)	94, 250
SduI	GDGCHC	1 cut(s)	684
SfaNI	GCATC	3 cut(s)	211, 637, 709
SfcI	CTRYAG	2 cut(s)	162, 794
SinI	GGWCC	1 cut(s)	43
SmlI	CTYRAG	1 cut(s)	800
SmoI	CTYRAG	1 cut(s)	800
Sse9I	AATT	3 cut(s)	541, 585, 769
SseBI	AGGCCT	2 cut(s)	92, 447
SsiI	CCGC	2 cut(s)	181, 640
SspMI	CTAG	1 cut(s)	698
SstI	GAGCTC	1 cut(s)	684
StuI	AGGCCT	2 cut(s)	92, 447
StyD4I	CCNGG	2 cut(s)	92, 248
TaaI	ACNGT	3 cut(s)	106, 484, 622
TaiI	ACGT	1 cut(s)	766
TaqI	TCGA	3 cut(s)	48, 379, 551
TasI	AATT	3 cut(s)	541, 585, 769
TatI	WGTACW	1 cut(s)	394
TauI	GCSGC	1 cut(s)	643
TfiI	GAWTC	3 cut(s)	23, 120, 257
Tru1I	TTAA	3 cut(s)	126, 288, 916
Tru9I	TTAA	3 cut(s)	126, 288, 916
TscAI	CASTG	3 cut(s)	625, 717, 874
TseI	GCWGC	4 cut(s)	169, 707, 730, 796
TspDTI	ATGAA	3 cut(s)	17, 248, 540
TspRI	CASTG	3 cut(s)	625, 717, 874
Van91I	CCANNNNNTGG	1 cut(s)	613
VpaK11BI	GGWCC	1 cut(s)	43
XapI	RAATTY	1 cut(s)	541
XspI	CTAG	1 cut(s)	698
ZrmI	AGTACT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.