Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003204

Physical Location & Seq

Genomic Coordinates Reverse (-)

6907626 .. 6908543

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1082900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGAACGATTTGTTTATGAGCGATTCGTTCAAAAGATACAAGGACCTTGAGCGCCAAGTCTACATCGATGACATGCAGGATGGAGGCGAGACATGGAAAGAGACTGTCGATCTTGATGGATTCTTCAAGGAGATAGAGAATGTCCAACGTGACATGAGAGCTGTGGTGCAGCATTACAAGCGGTTAGAGGGAGCCAACGAGAAGAGCAAGCTCGTCCACGATGCCAAGTCCATGAAGGGGCTTCGCGCACGGATGGACTCTGATGTTGAGCAGGTGTTGAAGTTGGTTAAACTCATCAAGGGGAAGTTAGAAAAGCTCGAACTCTCCAATGAGGATCAGCGAAAAGTTCCAGGGTGCGGCACAGGGTCATCTTCGGATCGAACAAGAACTTCAGTGTTCAATGGCTTGGCCAAGAAGCTAAAGGACATGATGGATGATTTTCAAGGCTTAAGGGCCAAAATTGCATGCGAATACAAAGAGACAGTTCAAAGGAGGTACTTCACAATCACAGGTGAGAAGGCCAACAAGGAAACAATAGAGAATTTGATATCGAGCGGAGAGGGAGAGACATTGCTCCAGAAGGCGATGGAGGAGCAGGGCCGCGGCCAAGTTTTGGACACGGTTCAAGAAATCCAAGAGAGGCTTGGTGCTGTGAAGGAGATGGAGAAGAGCCTCATTGAGCTCCACCAGGTATTCCTTGACATGGCTGCACTCGTAGATGCACAAGGGCAGCAGCTGAACGACATCGAGAGCCACGTGGCGCATGCCAATTCATTCGTTAGGCGGGGAACCGTGCAGCTTGAGGTGGCTAAGGACTATCAGAAGAGTACCAGGAAGTGCACTTGCATTGCCATTGTTATTGGCACTTGTGTTATTGTCATTCTTCTTTTGCCTATTTTGCTTGACTTCAAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

306

Amino Acids

34.66

Weight (kDa)

6.07

Isoelectric Point (pI)

28.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	37 - 196	4.2e-49	Syntaxin
SNARE	PF05739	245 - 296	9.6e-15	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11250 AT1G61290 AT1G61290 AT4G03330
fragaria_vesca	FvH4_3g04130 FvH4_6g44820
malus_domestica	MD05G1324600.v1.1 MD10G1302400.v1.1 MD17G1082900.v1.1
prunus_persica	Prupe.3G232300_v2.0.a1 Prupe.4G036000_v2.0.a1
pyrus_communis	pycom05g29880 pycom10g25490
rosa_chinensis	RchiOBHm_Chr2g0162001 RchiOBHm_Chr5g0006581
rosa_laevigata	RLG00000021314 RLG00000031401
rosa_multiflora	Rmu_co8449309.1_g000002 Rmu_co8484739.1_g000001 Rmu_sc0005741.1_g000004 Rmu_sc0008428.1_g000004 Rmu_sc0011154.1_g000007 Rmu_sc0038528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069460 Rroxscaffold_2G00088410
rosa_rugosa	Rorug02G0493900 Rorug04G0422800
rosa_samantha	Rh2AG559800 Rh2BG573200 Rh2CG543400 Rh2DG583000 Rh5AG049900 Rh5BG049200 Rh5CG057600 Rh5DG048600
rosa_wichuraiana	Rw2G046330 Rw5G005000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	262
Acc36I	ACCTGC	1 cut(s)	262
AccB7I	CCANNNNNTGG	1 cut(s)	613
AccBSI	CCGCTC	1 cut(s)	555
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	2 cut(s)	246, 603
AciI	CCGC	6 cut(s)	181, 357, 555, 601, 603, 784
AclWI	GGATC	2 cut(s)	342, 384
AcoI	YGGCCR	2 cut(s)	408, 604
AcsI	RAATTY	1 cut(s)	541
AcuI	CTGAAG	1 cut(s)	375
AcvI	CACGTG	1 cut(s)	757
AfaI	GTAC	2 cut(s)	497, 829
AfiI	CCNNNNNNNGG	4 cut(s)	237, 356, 613, 703
AflII	CTTAAG	1 cut(s)	448
AgsI	TTSAA	8 cut(s)	31, 127, 280, 400, 443, 488, 626, 910
AjnI	CCWGG	3 cut(s)	349, 687, 830
AluBI	AGCT	7 cut(s)	161, 211, 316, 418, 682, 736, 799
AluI	AGCT	7 cut(s)	161, 211, 316, 418, 682, 736, 799
Alw21I	GWGCWC	2 cut(s)	684, 842
Alw26I	GTCTC	4 cut(s)	83, 95, 473, 560
Alw44I	GTGCAC	1 cut(s)	838
AlwI	GGATC	2 cut(s)	342, 384
AlwNI	CAGNNNCTG	1 cut(s)	736
AoxI	GGCC	5 cut(s)	408, 453, 519, 598, 604
ApaLI	GTGCAC	1 cut(s)	838
ApeKI	GCWGC	5 cut(s)	169, 707, 730, 733, 796
ApoI	RAATTY	1 cut(s)	541
AspLEI	GCGC	3 cut(s)	54, 248, 763
AspS9I	GGNCC	3 cut(s)	43, 453, 598
AsuHPI	GGTGA	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	842
BalI	TGGCCA	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	684
BbrPI	CACGTG	1 cut(s)	757
Bbv12I	GWGCWC	2 cut(s)	684, 842
BbvI	GCAGC	5 cut(s)	181, 694, 742, 745, 808
BccI	CCATC	6 cut(s)	74, 110, 247, 424, 580, 655
BciT130I	CCWGG	3 cut(s)	351, 689, 832
BcoDI	GTCTC	4 cut(s)	83, 95, 473, 560
BfoI	RGCGCY	1 cut(s)	55
BfrI	CTTAAG	1 cut(s)	448
BfuAI	ACCTGC	1 cut(s)	262
BisI	GCNGC	8 cut(s)	170, 358, 601, 604, 708, 731, 734, 797
BlsI	GCNGC	8 cut(s)	171, 359, 602, 605, 709, 732, 735, 798
Bme1390I	CCNGG	3 cut(s)	351, 689, 832
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	3 cut(s)	43, 453, 598
BmiI	GGNNCC	2 cut(s)	193, 790
BmrFI	CCNGG	3 cut(s)	351, 689, 832
BmsI	GCATC	2 cut(s)	211, 709
BpmI	CTGGAG	1 cut(s)	560
Bpu10I	CCTNAGC	1 cut(s)	810
BpuEI	CTTGAG	2 cut(s)	68, 821
Bsa29I	ATCGAT	1 cut(s)	66
BsaAI	YACGTR	1 cut(s)	757
BsaJI	CCNNGG	2 cut(s)	350, 601
Bsc4I	CCNNNNNNNGG	4 cut(s)	237, 356, 613, 703
Bse3DI	GCAATG	2 cut(s)	569, 846
BseBI	CCWGG	3 cut(s)	351, 689, 832
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	350, 601
BseGI	GGATG	3 cut(s)	85, 258, 439
BseLI	CCNNNNNNNGG	4 cut(s)	237, 356, 613, 703
BseMI	GCAATG	2 cut(s)	569, 846
BseRI	GAGGAG	1 cut(s)	605
BseSI	GKGCMC	1 cut(s)	842
BseXI	GCAGC	5 cut(s)	181, 694, 742, 745, 808
BsgI	GTGCAG	3 cut(s)	188, 693, 815
Bsh1236I	CGCG	2 cut(s)	246, 603
BshFI	GGCC	5 cut(s)	410, 455, 521, 600, 606
BshVI	ATCGAT	1 cut(s)	66
BsiHKAI	GWGCWC	2 cut(s)	684, 842
BslI	CCNNNNNNNGG	4 cut(s)	237, 356, 613, 703
BsmAI	GTCTC	4 cut(s)	83, 95, 473, 560
BsnI	GGCC	5 cut(s)	410, 455, 521, 600, 606
Bsp1286I	GDGCHC	2 cut(s)	684, 842
Bsp143I	GATC	3 cut(s)	109, 334, 376
BspACI	CCGC	6 cut(s)	181, 357, 555, 601, 603, 784
BspANI	GGCC	5 cut(s)	410, 455, 521, 600, 606
BspDI	ATCGAT	1 cut(s)	66
BspFNI	CGCG	2 cut(s)	246, 603
BspLI	GGNNCC	2 cut(s)	193, 790
BspMI	ACCTGC	1 cut(s)	262
BspPI	GGATC	2 cut(s)	342, 384
BspQI	GCTCTTC	2 cut(s)	197, 662
BspTI	CTTAAG	1 cut(s)	448
BsrBI	CCGCTC	1 cut(s)	555
BsrDI	GCAATG	2 cut(s)	569, 846
BssECI	CCNNGG	2 cut(s)	350, 601
BssMI	GATC	3 cut(s)	109, 334, 376
Bst2UI	CCWGG	3 cut(s)	351, 689, 832
Bst4CI	ACNGT	4 cut(s)	106, 484, 622, 793
Bst6I	CTCTTC	3 cut(s)	197, 662, 818
BstAFI	CTTAAG	1 cut(s)	448
BstBAI	YACGTR	1 cut(s)	757
BstC8I	GCNNGC	3 cut(s)	209, 466, 765
BstDEI	CTNAG	1 cut(s)	810
BstDSI	CCRYGG	1 cut(s)	601
BstF5I	GGATG	3 cut(s)	85, 258, 439
BstFNI	CGCG	2 cut(s)	246, 603
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	3 cut(s)	54, 248, 763
BstKTI	GATC	3 cut(s)	112, 337, 379
BstMAI	GTCTC	4 cut(s)	83, 95, 473, 560
BstMBI	GATC	3 cut(s)	109, 334, 376
BstMWI	GCNNNNNNNGC	3 cut(s)	178, 461, 898
BstNI	CCWGG	3 cut(s)	351, 689, 832
BstNSI	RCATGY	3 cut(s)	76, 468, 767
BstSCI	CCNGG	3 cut(s)	349, 687, 830
BstSLI	GKGCMC	1 cut(s)	842
BstUI	CGCG	2 cut(s)	246, 603
BstV1I	GCAGC	5 cut(s)	181, 694, 742, 745, 808
Bsu15I	ATCGAT	1 cut(s)	66
BsuRI	GGCC	5 cut(s)	410, 455, 521, 600, 606
BsuTUI	ATCGAT	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	601
BtgZI	GCGATG	1 cut(s)	599
BtsCI	GGATG	3 cut(s)	85, 258, 439
BtsIMutI	CAGTG	1 cut(s)	399
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	3 cut(s)	209, 466, 765
CaiI	CAGNNNCTG	1 cut(s)	736
CfoI	GCGC	3 cut(s)	54, 248, 763
Cfr13I	GGNCC	3 cut(s)	43, 453, 598
Cfr42I	CCGCGG	1 cut(s)	604
ClaI	ATCGAT	1 cut(s)	66
CsiI	ACCWGGT	1 cut(s)	687
Csp6I	GTAC	2 cut(s)	496, 828
CviAII	CATG	8 cut(s)	73, 93, 154, 232, 427, 465, 703, 764
CviQI	GTAC	2 cut(s)	496, 828
DdeI	CTNAG	1 cut(s)	810
DpnI	GATC	3 cut(s)	111, 336, 378
DpnII	GATC	3 cut(s)	109, 334, 376
EaeI	YGGCCR	2 cut(s)	408, 604
Eam1104I	CTCTTC	3 cut(s)	197, 662, 818
EarI	CTCTTC	3 cut(s)	197, 662, 818
Ecl136II	GAGCTC	1 cut(s)	682
Eco24I	GRGCYC	1 cut(s)	684
Eco32I	GATATC	1 cut(s)	549
Eco47I	GGWCC	1 cut(s)	43
Eco53kI	GAGCTC	1 cut(s)	682
Eco57I	CTGAAG	1 cut(s)	375
Eco72I	CACGTG	1 cut(s)	757
EcoICRI	GAGCTC	1 cut(s)	682
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	3 cut(s)	349, 687, 830
EcoRV	GATATC	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	684
FaeI	CATG	8 cut(s)	76, 96, 157, 235, 430, 468, 706, 767
FaiI	YATR	9 cut(s)	17, 74, 94, 155, 233, 428, 466, 704, 765
FalI	AAGNNNNNCTT	2 cut(s)	627, 659
FatI	CATG	8 cut(s)	72, 92, 153, 231, 426, 464, 702, 763
FauI	CCCGC	1 cut(s)	777
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	8 cut(s)	170, 358, 601, 604, 708, 731, 734, 797
FokI	GGATG	3 cut(s)	92, 265, 446
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	8 cut(s)	170, 358, 601, 604, 708, 731, 734, 797
GlaI	GCGC	3 cut(s)	53, 247, 762
GluI	GCNGC	8 cut(s)	170, 358, 601, 604, 708, 731, 734, 797
GsuI	CTGGAG	1 cut(s)	560
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	5 cut(s)	410, 455, 521, 600, 606
HhaI	GCGC	3 cut(s)	54, 248, 763
Hin1II	CATG	8 cut(s)	76, 96, 157, 235, 430, 468, 706, 767
Hin6I	GCGC	3 cut(s)	52, 246, 761
HinP1I	GCGC	3 cut(s)	52, 246, 761
HinfI	GANTC	3 cut(s)	23, 120, 257
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	3 cut(s)	61, 217, 840
Hpy188I	TCNGA	3 cut(s)	262, 376, 822
Hpy188III	TCNNGA	5 cut(s)	113, 577, 626, 748, 910
Hpy8I	GTNNAC	3 cut(s)	61, 217, 840
HpyAV	CCTTC	4 cut(s)	229, 511, 574, 649
HpyCH4III	ACNGT	4 cut(s)	106, 484, 622, 793
HpyCH4IV	ACGT	2 cut(s)	148, 756
HpyCH4V	TGCA	8 cut(s)	76, 169, 464, 710, 722, 796, 840, 846
HpyF10VI	GCNNNNNNNGC	3 cut(s)	178, 461, 898
HpyF3I	CTNAG	1 cut(s)	810
HpySE526I	ACGT	2 cut(s)	148, 756
Hsp92II	CATG	8 cut(s)	76, 96, 157, 235, 430, 468, 706, 767
HspAI	GCGC	3 cut(s)	52, 246, 761
KspI	CCGCGG	1 cut(s)	604
Kzo9I	GATC	3 cut(s)	109, 334, 376
LguI	GCTCTTC	2 cut(s)	197, 662
LmnI	GCTCC	4 cut(s)	191, 579, 592, 687
Lsp1109I	GCAGC	5 cut(s)	181, 694, 742, 745, 808
LweI	GCATC	2 cut(s)	211, 709
MabI	ACCWGGT	1 cut(s)	687
MaeII	ACGT	2 cut(s)	148, 756
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	3 cut(s)	111, 336, 378
MbiI	CCGCTC	1 cut(s)	555
MboI	GATC	3 cut(s)	109, 334, 376
MboII	GAAGA	6 cut(s)	115, 214, 363, 679, 835, 875
MhlI	GDGCHC	2 cut(s)	684, 842
MlsI	TGGCCA	1 cut(s)	410
MluCI	AATT	3 cut(s)	459, 541, 769
MluNI	TGGCCA	1 cut(s)	410
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	9 cut(s)	77, 181, 325, 486, 553, 583, 633, 683, 796
Mox20I	TGGCCA	1 cut(s)	410
MscI	TGGCCA	1 cut(s)	410
MseI	TTAA	3 cut(s)	288, 449, 916
Msp20I	TGGCCA	1 cut(s)	410
MspA1I	CMGCKG	2 cut(s)	603, 736
MspCI	CTTAAG	1 cut(s)	448
MspR9I	CCNGG	3 cut(s)	351, 689, 832
MvaI	CCWGG	3 cut(s)	351, 689, 832
MvnI	CGCG	2 cut(s)	246, 603
MwoI	GCNNNNNNNGC	3 cut(s)	178, 461, 898
NdeII	GATC	3 cut(s)	109, 334, 376
NlaIII	CATG	8 cut(s)	76, 96, 157, 235, 430, 468, 706, 767
NlaIV	GGNNCC	2 cut(s)	193, 790
NmuCI	GTSAC	1 cut(s)	149
NspI	RCATGY	3 cut(s)	76, 468, 767
PaeI	GCATGC	2 cut(s)	468, 767
PaqCI	CACCTGC	1 cut(s)	262
PciSI	GCTCTTC	2 cut(s)	197, 662
PcsI	WCGNNNNNNNCGW	1 cut(s)	753
PfeI	GAWTC	2 cut(s)	23, 120
PflMI	CCANNNNNTGG	1 cut(s)	613
PkrI	GCNGC	8 cut(s)	171, 359, 602, 605, 709, 732, 735, 798
PleI	GAGTC	1 cut(s)	251
PmaCI	CACGTG	1 cut(s)	757
PmlI	CACGTG	1 cut(s)	757
PpsI	GAGTC	1 cut(s)	251
Ppu21I	YACGTR	1 cut(s)	757
PpuMI	RGGWCCY	1 cut(s)	43
Psp124BI	GAGCTC	1 cut(s)	684
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	3 cut(s)	349, 687, 830
PspCI	CACGTG	1 cut(s)	757
PspGI	CCWGG	3 cut(s)	349, 687, 830
PspN4I	GGNNCC	2 cut(s)	193, 790
PspPI	GGNCC	3 cut(s)	43, 453, 598
PspPPI	RGGWCCY	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	736
PvuII	CAGCTG	1 cut(s)	736
RsaI	GTAC	2 cut(s)	497, 829
RsaNI	GTAC	2 cut(s)	496, 828
SacI	GAGCTC	1 cut(s)	684
SacII	CCGCGG	1 cut(s)	604
SapI	GCTCTTC	2 cut(s)	197, 662
SaqAI	TTAA	3 cut(s)	288, 449, 916
SatI	GCNGC	8 cut(s)	170, 358, 601, 604, 708, 731, 734, 797
Sau3AI	GATC	3 cut(s)	109, 334, 376
Sau96I	GGNCC	3 cut(s)	43, 453, 598
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	3 cut(s)	351, 689, 832
SduI	GDGCHC	2 cut(s)	684, 842
SexAI	ACCWGGT	1 cut(s)	687
SfaNI	GCATC	2 cut(s)	211, 709
Sfr303I	CCGCGG	1 cut(s)	604
SgrBI	CCGCGG	1 cut(s)	604
SinI	GGWCC	1 cut(s)	43
SmlI	CTYRAG	3 cut(s)	47, 448, 800
SmoI	CTYRAG	3 cut(s)	47, 448, 800
SphI	GCATGC	2 cut(s)	468, 767
Sse9I	AATT	3 cut(s)	459, 541, 769
SsiI	CCGC	6 cut(s)	181, 357, 555, 601, 603, 784
SstI	GAGCTC	1 cut(s)	684
StyD4I	CCNGG	3 cut(s)	349, 687, 830
TaaI	ACNGT	4 cut(s)	106, 484, 622, 793
TaiI	ACGT	2 cut(s)	151, 759
TaqI	TCGA	6 cut(s)	66, 108, 318, 379, 551, 747
TasI	AATT	3 cut(s)	459, 541, 769
TauI	GCSGC	3 cut(s)	360, 603, 606
TfiI	GAWTC	2 cut(s)	23, 120
Tru1I	TTAA	3 cut(s)	288, 449, 916
Tru9I	TTAA	3 cut(s)	288, 449, 916
TscAI	CASTG	1 cut(s)	399
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	5 cut(s)	169, 707, 730, 733, 796
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	3 cut(s)	17, 248, 762
TspGWI	ACGGA	1 cut(s)	265
TspRI	CASTG	1 cut(s)	399
Van91I	CCANNNNNTGG	1 cut(s)	613
Vha464I	CTTAAG	1 cut(s)	448
VneI	GTGCAC	1 cut(s)	838
VpaK11BI	GGWCC	1 cut(s)	43
XapI	RAATTY	1 cut(s)	541
XceI	RCATGY	3 cut(s)	76, 468, 767
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.