pycom10g25490

Belongs to the syntaxin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
27114519 .. 27115430
912 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g25490.1

Sequence Viewer

Length: 912 bp
ATGAACGACTTATTTTCGAGCTCGTTTAAGAAGTACACGGACCTGAACCAGCAGGCCTACCTCGACGACATGGAGGCCGGCAAGGAAAGTGTTAACCTCGACAAGTTCTTCGAAGACGTGGAGAATGTGAAGGAGGACATGAGGCAGGTCGAGAGGCTGTACAAGCAGCTGCAGGACGCCAATGAGGAGAGCAAGACCGTGCACAATGCGAAAACCATGAAGGAGCTCCGGACTCGAATGGACTTGGAAGTCGAGCAGGTCCTCAAAAGGGTCAAAATCATCAAGGGAAAGCTCGAAGGTTTAGAGCGTTCGAACGCAGCGCACAGGAACCTTCCCGGGTGCGGCCCTGGATCCTCTGCTGATCGAACGAGAACCTCGGTGGTTAGTGGCTTGGGGAAGAAGTTAAAGGACATGATGGATGACTTTCAAGGGTTGAGAGCCAGGATGACAGCCGAGTACAAGGAAACAATAGAACGCAGGTATTTCACAATCACCGGAGAGAAAGCGAGCGAGGATACCATCGAAACTTTGATTTCGAGCGGAGAGAGTGAGAGTTTTCTGCAGAAGGCAATTCAGGAGCAGGGGAGCGGTCAGATTATGGACACCATATCCGAAATGCAAGAGAGACACGATGCTGTGAAGGAGATCGAGAAGAATTTGATCGAGCTGCATCAGATATTCTTGGACATGGCGGCCCTGGTCGAAGCTCAGGGCCATCAGCTCAACGACATTGAGAGCCACGTCATGCACGCGAGTTCTTTCGTGAGACGCGGCACTGAAAACCTTCAGGTAGCCAAAGAACAGCAGAAGAAATCAAGGAAGTGGACATGCATTGCAATAATTCTTGGAATAGTCCTCATCATTCTCATCCTAATTCCAATTATCTTACAAGTTTTGCCCCATATGAAATAG

Protein Analysis

304

Amino Acids

34.6

Weight (kDa)

5.85

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin PF00804 31 - 191 3.6e-53 Syntaxin
SNARE PF05739 240 - 291 2.1e-16 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 248
Acc36I ACCTGC 3 cut(s) 136, 247, 468
AccBSI CCGCTC 2 cut(s) 540, 588
AccII CGCG 2 cut(s) 752, 771
AccIII TCCGGA 1 cut(s) 228
AciI CCGC 5 cut(s) 342, 540, 588, 692, 771
AclWI GGATC 2 cut(s) 345, 358
AcsI RAATTY 1 cut(s) 655
AcuI CTGAAG 1 cut(s) 770
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 3 cut(s) 35, 161, 458
AfiI CCNNNNNNNGG 2 cut(s) 268, 341
AgsI TTSAA 1 cut(s) 428
AjiI CACGTC 2 cut(s) 118, 742
AjnI CCWGG 3 cut(s) 346, 440, 696
AluBI AGCT 7 cut(s) 21, 169, 226, 292, 667, 707, 721
AluI AGCT 7 cut(s) 21, 169, 226, 292, 667, 707, 721
Alw21I GWGCWC 3 cut(s) 23, 204, 228
Alw26I GTCTC 2 cut(s) 619, 760
Alw44I GTGCAC 1 cut(s) 200
AlwI GGATC 2 cut(s) 345, 358
Ama87I CYCGRG 1 cut(s) 335
Aor13HI TCCGGA 1 cut(s) 228
AoxI GGCC 5 cut(s) 54, 75, 343, 693, 712
ApaLI GTGCAC 1 cut(s) 200
ApeKI GCWGC 4 cut(s) 166, 169, 317, 667
ApoI RAATTY 1 cut(s) 655
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
Asp700I GAANNNNTTC 1 cut(s) 783
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 5 cut(s) 40, 259, 344, 694, 712
AsuC2I CCSGG 2 cut(s) 336, 337
AsuHPI GGTGA 1 cut(s) 484
AsuII TTCGAA 2 cut(s) 111, 311
AvaI CYCGRG 1 cut(s) 335
AvaII GGWCC 2 cut(s) 40, 259
BaeGI GKGCMC 1 cut(s) 204
BamHI GGATCC 1 cut(s) 350
BanII GRGCYC 2 cut(s) 23, 228
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 3 cut(s) 23, 204, 228
BbvI GCAGC 4 cut(s) 156, 178, 329, 654
BccI CCATC 3 cut(s) 409, 527, 723
BciT130I CCWGG 3 cut(s) 348, 442, 698
BciVI GTATCC 1 cut(s) 508
BcnI CCSGG 2 cut(s) 336, 337
BcoDI GTCTC 2 cut(s) 619, 760
BfmI CTRYAG 2 cut(s) 170, 560
BfuAI ACCTGC 3 cut(s) 136, 247, 468
BfuI GTATCC 1 cut(s) 508
BisI GCNGC 7 cut(s) 167, 170, 318, 343, 668, 693, 772
BlsI GCNGC 7 cut(s) 168, 171, 319, 344, 669, 694, 773
Bme1390I CCNGG 5 cut(s) 336, 337, 348, 442, 698
Bme18I GGWCC 2 cut(s) 40, 259
BmeT110I CYCGRG 1 cut(s) 335
BmgBI CACGTC 2 cut(s) 118, 742
BmgT120I GGNCC 5 cut(s) 40, 259, 344, 694, 712
BmiI GGNNCC 2 cut(s) 329, 352
BmrFI CCNGG 5 cut(s) 336, 337, 348, 442, 698
BmsI GCATC 2 cut(s) 622, 679
BpiI GAAGAC 1 cut(s) 120
Bpu10I CCTNAGC 1 cut(s) 708
Bpu14I TTCGAA 2 cut(s) 111, 311
BpuMI CCSGG 2 cut(s) 336, 337
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 4 cut(s) 335, 346, 375, 696
BsaWI WCCGGW 2 cut(s) 228, 494
Bsc4I CCNNNNNNNGG 2 cut(s) 268, 341
Bse118I RCCGGY 1 cut(s) 77
Bse3DI GCAATG 1 cut(s) 831
BseAI TCCGGA 1 cut(s) 228
BseBI CCWGG 3 cut(s) 348, 442, 698
BseDI CCNNGG 4 cut(s) 335, 346, 375, 696
BseGI GGATG 3 cut(s) 424, 450, 867
BseLI CCNNNNNNNGG 2 cut(s) 268, 341
BseMI GCAATG 1 cut(s) 831
BseMII CTCAG 1 cut(s) 722
BseRI GAGGAG 1 cut(s) 200
BseSI GKGCMC 1 cut(s) 204
BseXI GCAGC 4 cut(s) 156, 178, 329, 654
Bsh1236I CGCG 2 cut(s) 752, 771
BshFI GGCC 5 cut(s) 56, 77, 345, 695, 714
BsiHKAI GWGCWC 3 cut(s) 23, 204, 228
BsiHKCI CYCGRG 1 cut(s) 335
BsiSI CCGG 4 cut(s) 78, 229, 336, 495
BslI CCNNNNNNNGG 2 cut(s) 268, 341
BsmAI GTCTC 2 cut(s) 619, 760
BsmBI CGTCTC 1 cut(s) 760
BsnI GGCC 5 cut(s) 56, 77, 345, 695, 714
BsoBI CYCGRG 1 cut(s) 335
Bsp119I TTCGAA 2 cut(s) 111, 311
Bsp1286I GDGCHC 3 cut(s) 23, 204, 228
Bsp13I TCCGGA 1 cut(s) 228
Bsp1407I TGTACA 1 cut(s) 159
Bsp143I GATC 4 cut(s) 350, 361, 645, 660
BspACI CCGC 5 cut(s) 342, 540, 588, 692, 771
BspANI GGCC 5 cut(s) 56, 77, 345, 695, 714
BspCNI CTCAG 1 cut(s) 721
BspEI TCCGGA 1 cut(s) 228
BspFNI CGCG 2 cut(s) 752, 771
BspLI GGNNCC 2 cut(s) 329, 352
BspMAI CTGCAG 2 cut(s) 174, 564
BspMI ACCTGC 3 cut(s) 136, 247, 468
BspPI GGATC 2 cut(s) 345, 358
BspT104I TTCGAA 2 cut(s) 111, 311
BsrBI CCGCTC 2 cut(s) 540, 588
BsrDI GCAATG 1 cut(s) 831
BsrFI RCCGGY 1 cut(s) 77
BsrGI TGTACA 1 cut(s) 159
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 4 cut(s) 335, 346, 375, 696
BssMI GATC 4 cut(s) 350, 361, 645, 660
BssNI GRCGYC 1 cut(s) 177
Bst2UI CCWGG 3 cut(s) 348, 442, 698
Bst4CI ACNGT 1 cut(s) 199
BstACI GRCGYC 1 cut(s) 177
BstAUI TGTACA 1 cut(s) 159
BstBI TTCGAA 2 cut(s) 111, 311
BstC8I GCNNGC 4 cut(s) 54, 79, 508, 750
BstDEI CTNAG 1 cut(s) 708
BstF5I GGATG 3 cut(s) 424, 450, 867
BstFNI CGCG 2 cut(s) 752, 771
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 4 cut(s) 353, 364, 648, 663
BstMAI GTCTC 2 cut(s) 619, 760
BstMBI GATC 4 cut(s) 350, 361, 645, 660
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstNI CCWGG 3 cut(s) 348, 442, 698
BstNSI RCATGY 1 cut(s) 831
BstSCI CCNGG 5 cut(s) 334, 335, 346, 440, 696
BstSFI CTRYAG 2 cut(s) 170, 560
BstSLI GKGCMC 1 cut(s) 204
BstUI CGCG 2 cut(s) 752, 771
BstV1I GCAGC 4 cut(s) 156, 178, 329, 654
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
BsuI GTATCC 1 cut(s) 508
BsuRI GGCC 5 cut(s) 56, 77, 345, 695, 714
BtrI CACGTC 2 cut(s) 118, 742
BtsCI GGATG 3 cut(s) 424, 450, 867
BtsIMutI CAGTG 1 cut(s) 774
BveI ACCTGC 3 cut(s) 136, 247, 468
Cac8I GCNNGC 4 cut(s) 54, 79, 508, 750
CfoI GCGC 1 cut(s) 322
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 5 cut(s) 40, 259, 344, 694, 712
Cfr9I CCCGGG 1 cut(s) 335
CseI GACGC 2 cut(s) 185, 777
Csp6I GTAC 3 cut(s) 34, 160, 457
CviAII CATG 7 cut(s) 70, 139, 217, 412, 688, 745, 828
CviQI GTAC 3 cut(s) 34, 160, 457
DdeI CTNAG 1 cut(s) 708
DpnI GATC 4 cut(s) 352, 363, 647, 662
DpnII GATC 4 cut(s) 350, 361, 645, 660
DrdI GACNNNNNNGTC 1 cut(s) 248
DseDI GACNNNNNNGTC 1 cut(s) 248
Ecl136II GAGCTC 2 cut(s) 21, 226
Eco147I AGGCCT 1 cut(s) 56
Eco24I GRGCYC 2 cut(s) 23, 228
Eco47I GGWCC 2 cut(s) 40, 259
Eco53kI GAGCTC 2 cut(s) 21, 226
Eco57I CTGAAG 1 cut(s) 770
Eco88I CYCGRG 1 cut(s) 335
EcoICRI GAGCTC 2 cut(s) 21, 226
EcoO109I RGGNCCY 1 cut(s) 259
EcoRII CCWGG 3 cut(s) 346, 440, 696
EcoT22I ATGCAT 1 cut(s) 833
EcoT38I GRGCYC 2 cut(s) 23, 228
Esp3I CGTCTC 1 cut(s) 760
FaeI CATG 7 cut(s) 73, 142, 220, 415, 691, 748, 831
FatI CATG 7 cut(s) 69, 138, 216, 411, 687, 744, 827
FauNDI CATATG 1 cut(s) 903
Fnu4HI GCNGC 7 cut(s) 167, 170, 318, 343, 668, 693, 772
FokI GGATG 3 cut(s) 431, 457, 854
FriOI GRGCYC 2 cut(s) 23, 228
Fsp4HI GCNGC 7 cut(s) 167, 170, 318, 343, 668, 693, 772
GlaI GCGC 1 cut(s) 321
GluI GCNGC 7 cut(s) 167, 170, 318, 343, 668, 693, 772
HaeIII GGCC 5 cut(s) 56, 77, 345, 695, 714
HapII CCGG 4 cut(s) 78, 229, 336, 495
HgaI GACGC 2 cut(s) 185, 777
HhaI GCGC 1 cut(s) 322
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 7 cut(s) 73, 142, 220, 415, 691, 748, 831
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 1 cut(s) 232
HpaI GTTAAC 1 cut(s) 94
HpaII CCGG 4 cut(s) 78, 229, 336, 495
HphI GGTGA 1 cut(s) 484
Hpy166II GTNNAC 4 cut(s) 36, 94, 202, 825
Hpy188I TCNGA 3 cut(s) 594, 613, 675
Hpy188III TCNNGA 5 cut(s) 151, 229, 575, 649, 763
Hpy8I GTNNAC 4 cut(s) 36, 94, 202, 825
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 7 cut(s) 124, 214, 290, 341, 559, 634, 794
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 2 cut(s) 117, 741
HpyCH4V TGCA 8 cut(s) 172, 202, 562, 619, 670, 748, 831, 836
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpyF3I CTNAG 1 cut(s) 708
HpySE526I ACGT 2 cut(s) 117, 741
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 7 cut(s) 73, 142, 220, 415, 691, 748, 831
HspAI GCGC 1 cut(s) 320
Kpn2I TCCGGA 1 cut(s) 228
KroI GCCGGC 1 cut(s) 77
KroNI GCCGGC 1 cut(s) 79
KspAI GTTAAC 1 cut(s) 94
Kzo9I GATC 4 cut(s) 350, 361, 645, 660
LmnI GCTCC 4 cut(s) 223, 231, 577, 585
Lsp1109I GCAGC 4 cut(s) 156, 178, 329, 654
LweI GCATC 2 cut(s) 622, 679
MaeII ACGT 2 cut(s) 117, 741
MalI GATC 4 cut(s) 352, 363, 647, 662
MbiI CCGCTC 2 cut(s) 540, 588
MboI GATC 4 cut(s) 350, 361, 645, 660
MboII GAAGA 5 cut(s) 100, 125, 409, 664, 820
MflI RGATCY 1 cut(s) 350
MhlI GDGCHC 3 cut(s) 23, 204, 228
MluCI AATT 5 cut(s) 570, 655, 840, 873, 879
MlyI GAGTC 1 cut(s) 226
Mph1103I ATGCAT 1 cut(s) 833
MroI TCCGGA 1 cut(s) 228
MroNI GCCGGC 1 cut(s) 77
MroXI GAANNNNTTC 1 cut(s) 783
MseI TTAA 3 cut(s) 27, 93, 404
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 4 cut(s) 78, 229, 336, 495
MspR9I CCNGG 5 cut(s) 336, 337, 348, 442, 698
MvaI CCWGG 3 cut(s) 348, 442, 698
MvnI CGCG 2 cut(s) 752, 771
MwoI GCNNNNNNNGC 1 cut(s) 163
NaeI GCCGGC 1 cut(s) 79
NciI CCSGG 2 cut(s) 336, 337
NdeI CATATG 1 cut(s) 903
NdeII GATC 4 cut(s) 350, 361, 645, 660
NgoMIV GCCGGC 1 cut(s) 77
NlaIII CATG 7 cut(s) 73, 142, 220, 415, 691, 748, 831
NlaIV GGNNCC 2 cut(s) 329, 352
NmeAIII GCCGAG 1 cut(s) 478
NsiI ATGCAT 1 cut(s) 833
NspI RCATGY 1 cut(s) 831
NspV TTCGAA 2 cut(s) 111, 311
PceI AGGCCT 1 cut(s) 56
PdiI GCCGGC 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 783
PkrI GCNGC 7 cut(s) 168, 171, 319, 344, 669, 694, 773
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
PpuMI RGGWCCY 1 cut(s) 259
Psp124BI GAGCTC 2 cut(s) 23, 228
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 3 cut(s) 346, 440, 696
PspGI CCWGG 3 cut(s) 346, 440, 696
PspN4I GGNNCC 2 cut(s) 329, 352
PspPI GGNCC 5 cut(s) 40, 259, 344, 694, 712
PspPPI RGGWCCY 1 cut(s) 259
PstI CTGCAG 2 cut(s) 174, 564
PsuI RGATCY 1 cut(s) 350
PvuII CAGCTG 1 cut(s) 169
RsaI GTAC 3 cut(s) 35, 161, 458
RsaNI GTAC 3 cut(s) 34, 160, 457
SacI GAGCTC 2 cut(s) 23, 228
SaqAI TTAA 3 cut(s) 27, 93, 404
SatI GCNGC 7 cut(s) 167, 170, 318, 343, 668, 693, 772
Sau3AI GATC 4 cut(s) 350, 361, 645, 660
Sau96I GGNCC 5 cut(s) 40, 259, 344, 694, 712
SchI GAGTC 1 cut(s) 226
ScrFI CCNGG 5 cut(s) 336, 337, 348, 442, 698
SduI GDGCHC 3 cut(s) 23, 204, 228
SfaNI GCATC 2 cut(s) 622, 679
SfcI CTRYAG 2 cut(s) 170, 560
SfuI TTCGAA 2 cut(s) 111, 311
SinI GGWCC 2 cut(s) 40, 259
SmaI CCCGGG 1 cut(s) 337
Sse9I AATT 5 cut(s) 570, 655, 840, 873, 879
SseBI AGGCCT 1 cut(s) 56
SsiI CCGC 5 cut(s) 342, 540, 588, 692, 771
SstI GAGCTC 2 cut(s) 23, 228
StuI AGGCCT 1 cut(s) 56
StyD4I CCNGG 5 cut(s) 334, 335, 346, 440, 696
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 2 cut(s) 120, 744
TasI AATT 5 cut(s) 570, 655, 840, 873, 879
TatI WGTACW 3 cut(s) 33, 159, 456
TauI GCSGC 3 cut(s) 345, 695, 774
Tru1I TTAA 3 cut(s) 27, 93, 404
Tru9I TTAA 3 cut(s) 27, 93, 404
TscAI CASTG 1 cut(s) 781
TseI GCWGC 4 cut(s) 166, 169, 317, 667
TspDTI ATGAA 2 cut(s) 17, 233
TspGWI ACGGA 1 cut(s) 53
TspMI CCCGGG 1 cut(s) 335
TspRI CASTG 1 cut(s) 781
VneI GTGCAC 1 cut(s) 200
VpaK11BI GGWCC 2 cut(s) 40, 259
XapI RAATTY 1 cut(s) 655
XceI RCATGY 1 cut(s) 831
XmaI CCCGGG 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 783
Zsp2I ATGCAT 1 cut(s) 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.