Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003204

Physical Location & Seq

Genomic Coordinates Forward (+)

4060851 .. 4063042

Gene Structure 2192 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG048600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGAACGACTTATTTTCGAGCTCGTTCAAGAAATACACAGACCTGAAGCAGCAGGCCTACCTGGACGACATGGAGGCAGGGAAGGAGAATATTAATCTTGACAAGTTTTTCGAAGATGTAGAGAATGTGAAGGAGGATATGAGACAGGTGGAGAAGCTCTACAGGCAGCTACAGGAGGCCAATGAAGAGTGCAAGATTGTCCACAATGCGAAAACCATGAAGGAGCTCCGGACCAGAATGGACTTGGATGTGGAGCAAGTTCTCAAGAAGGTGAAGATCATTAAGGGAAAGCTGGAAGGTTTAGAGCGTTCGAATGCAGCTCATCGAAACAACCCGGGTTGTGGACCTGGTTCTTCAGCTGATCGAACGAGGACCTCAGTTGTTAGTGGGTTGGGGAAGAAGCTTAAGGGTATGATGGATGACTTTTCGGGGTTGAGAGCAAGAATGACAGCTGAGTACAAGGAGACAGTGGAGCGTAGGTACTTCACTATAACCGGAGAGAAAGCAAGCGAAGACACGATTGAGAATTTGATAGCAAGTGGAGAAAGTGAGAATTTTATGCAGAAGGCTATTCAGGAACAGGGGAGAGGTCAGATTATGGATACCATTTCCGAAATTCAAGAAAGACATGATGCTGTGAAGGAGATTGAGAAGAACTTGATCGAGCTGCATCAGATATTTTTGGACATGGCTGCTCTTGTAGAAGCACAAGGGCACCAGTTGAATGACATTGAGAGCCATGTCATGCATGCTAGTTCCTTTGTCAGACGCGGCACGGATCAGCTTCAAGAGGCTAAGGAGCAGCAAAAGAAATCGAGGAAGTGGGCGTGCATTGCTACACTTCTTGGAATAGTTCTTCTGATTCTCATCCTAATTCCAATATTATTGCAAGTTTTCCCACATATAATGAATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000149 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016050 GO:0016192 GO:0022406 GO:0022414 GO:0030133 GO:0030154 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032940 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044706 GO:0046903 GO:0048278 GO:0048284 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051704 GO:0060560 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097708 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

305

Amino Acids

34.89

Weight (kDa)

6.13

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	32 - 191	1.4e-50	Syntaxin
SNARE	PF05739	240 - 291	1.5e-16	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11250 AT1G61290 AT1G61290 AT4G03330
fragaria_vesca	FvH4_3g04130 FvH4_6g44820
malus_domestica	MD05G1324600.v1.1 MD10G1302400.v1.1 MD17G1082900.v1.1
prunus_persica	Prupe.3G232300_v2.0.a1 Prupe.4G036000_v2.0.a1
pyrus_communis	pycom05g29880 pycom10g25490
rosa_chinensis	RchiOBHm_Chr2g0162001 RchiOBHm_Chr5g0006581
rosa_laevigata	RLG00000021314 RLG00000031401
rosa_multiflora	Rmu_co8449309.1_g000002 Rmu_co8484739.1_g000001 Rmu_sc0005741.1_g000004 Rmu_sc0008428.1_g000004 Rmu_sc0011154.1_g000007 Rmu_sc0038528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069460 Rroxscaffold_2G00088410
rosa_rugosa	Rorug02G0493900 Rorug04G0422800
rosa_samantha	Rh2AG559800 Rh2BG573200 Rh2CG543400 Rh2DG583000 Rh5AG049900 Rh5BG049200 Rh5CG057600 Rh5DG048600
rosa_wichuraiana	Rw2G046330 Rw5G005000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	714
AccII	CGCG	1 cut(s)	771
AccIII	TCCGGA	1 cut(s)	228
AciI	CCGC	1 cut(s)	771
AclWI	GGATC	1 cut(s)	786
AcsI	RAATTY	3 cut(s)	526, 553, 615
AcuI	CTGAAG	2 cut(s)	65, 339
AfaI	GTAC	2 cut(s)	458, 482
AfiI	CCNNNNNNNGG	1 cut(s)	341
AflII	CTTAAG	1 cut(s)	404
AgsI	TTSAA	4 cut(s)	28, 620, 724, 788
AjnI	CCWGG	2 cut(s)	60, 346
Alw21I	GWGCWC	2 cut(s)	23, 228
Alw26I	GTCTC	2 cut(s)	136, 458
AlwI	GGATC	1 cut(s)	786
Ama87I	CYCGRG	1 cut(s)	334
Aor13HI	TCCGGA	1 cut(s)	228
AoxI	GGCC	2 cut(s)	54, 177
ApeKI	GCWGC	6 cut(s)	49, 166, 317, 667, 692, 802
ApoI	RAATTY	3 cut(s)	526, 553, 615
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
AseI	ATTAAT	1 cut(s)	93
AspS9I	GGNCC	3 cut(s)	231, 344, 372
AsuC2I	CCSGG	2 cut(s)	335, 336
AsuHPI	GGTGA	1 cut(s)	283
AsuII	TTCGAA	2 cut(s)	111, 311
AvaI	CYCGRG	1 cut(s)	334
AvaII	GGWCC	3 cut(s)	231, 344, 372
BaeGI	GKGCMC	1 cut(s)	717
BanI	GGYRCC	1 cut(s)	714
BanII	GRGCYC	2 cut(s)	23, 228
BbsI	GAAGAC	1 cut(s)	519
Bbv12I	GWGCWC	2 cut(s)	23, 228
BbvI	GCAGC	6 cut(s)	61, 178, 329, 654, 679, 814
BccI	CCATC	1 cut(s)	409
BciT130I	CCWGG	2 cut(s)	62, 348
BciVI	GTATCC	1 cut(s)	595
BcnI	CCSGG	2 cut(s)	335, 336
BcoDI	GTCTC	2 cut(s)	136, 458
BfaI	CTAG	1 cut(s)	753
BfmI	CTRYAG	2 cut(s)	160, 170
BfrI	CTTAAG	1 cut(s)	404
BfuI	GTATCC	1 cut(s)	595
BisI	GCNGC	7 cut(s)	50, 167, 318, 668, 693, 772, 803
BlsI	GCNGC	7 cut(s)	51, 168, 319, 669, 694, 773, 804
Bme1390I	CCNGG	4 cut(s)	62, 335, 336, 348
Bme18I	GGWCC	3 cut(s)	231, 344, 372
BmeT110I	CYCGRG	1 cut(s)	334
BmgT120I	GGNCC	3 cut(s)	231, 344, 372
BmiI	GGNNCC	1 cut(s)	716
BmrFI	CCNGG	4 cut(s)	62, 335, 336, 348
BmsI	GCATC	2 cut(s)	622, 679
BpiI	GAAGAC	1 cut(s)	519
Bpu10I	CCTNAGC	1 cut(s)	795
Bpu14I	TTCGAA	2 cut(s)	111, 311
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	2 cut(s)	335, 336
BsaBI	GATNNNNATC	1 cut(s)	866
BsaJI	CCNNGG	1 cut(s)	334
BsaWI	WCCGGW	2 cut(s)	228, 494
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	718
Bse3DI	GCAATG	1 cut(s)	831
Bse8I	GATNNNNATC	1 cut(s)	866
BseAI	TCCGGA	1 cut(s)	228
BseBI	CCWGG	2 cut(s)	62, 348
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	3 cut(s)	253, 424, 867
BseJI	GATNNNNATC	1 cut(s)	866
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMI	GCAATG	1 cut(s)	831
BseMII	CTCAG	2 cut(s)	390, 444
BseNI	ACTGG	1 cut(s)	718
BseSI	GKGCMC	1 cut(s)	717
BseXI	GCAGC	6 cut(s)	61, 178, 329, 654, 679, 814
Bsh1236I	CGCG	1 cut(s)	771
BshFI	GGCC	2 cut(s)	56, 179
BshNI	GGYRCC	1 cut(s)	714
BsiHKAI	GWGCWC	2 cut(s)	23, 228
BsiHKCI	CYCGRG	1 cut(s)	334
BsiSI	CCGG	3 cut(s)	229, 335, 495
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmAI	GTCTC	2 cut(s)	136, 458
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	56, 179
BsoBI	CYCGRG	1 cut(s)	334
Bsp119I	TTCGAA	2 cut(s)	111, 311
Bsp1286I	GDGCHC	3 cut(s)	23, 228, 717
Bsp13I	TCCGGA	1 cut(s)	228
Bsp143I	GATC	4 cut(s)	276, 361, 660, 778
BspACI	CCGC	1 cut(s)	771
BspANI	GGCC	2 cut(s)	56, 179
BspCNI	CTCAG	2 cut(s)	389, 445
BspEI	TCCGGA	1 cut(s)	228
BspFNI	CGCG	1 cut(s)	771
BspLI	GGNNCC	1 cut(s)	716
BspPI	GGATC	1 cut(s)	786
BspT104I	TTCGAA	2 cut(s)	111, 311
BspT107I	GGYRCC	1 cut(s)	714
BspTI	CTTAAG	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	831
BsrI	ACTGG	1 cut(s)	718
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	4 cut(s)	276, 361, 660, 778
Bst2UI	CCWGG	2 cut(s)	62, 348
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	1 cut(s)	180
BstAFI	CTTAAG	1 cut(s)	404
BstBI	TTCGAA	2 cut(s)	111, 311
BstC8I	GCNNGC	4 cut(s)	54, 508, 750, 829
BstDEI	CTNAG	3 cut(s)	376, 453, 795
BstF5I	GGATG	3 cut(s)	253, 424, 867
BstFNI	CGCG	1 cut(s)	771
BstKTI	GATC	4 cut(s)	279, 364, 663, 781
BstMAI	GTCTC	2 cut(s)	136, 458
BstMBI	GATC	4 cut(s)	276, 361, 660, 778
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 833
BstNI	CCWGG	2 cut(s)	62, 348
BstNSI	RCATGY	1 cut(s)	752
BstSCI	CCNGG	4 cut(s)	60, 333, 334, 346
BstSFI	CTRYAG	2 cut(s)	160, 170
BstSLI	GKGCMC	1 cut(s)	717
BstUI	CGCG	1 cut(s)	771
BstV1I	GCAGC	6 cut(s)	61, 178, 329, 654, 679, 814
BstV2I	GAAGAC	1 cut(s)	519
BsuI	GTATCC	1 cut(s)	595
BsuRI	GGCC	2 cut(s)	56, 179
BtsCI	GGATG	3 cut(s)	253, 424, 867
BtsIMutI	CAGTG	1 cut(s)	474
Cac8I	GCNNGC	4 cut(s)	54, 508, 750, 829
Cfr13I	GGNCC	3 cut(s)	231, 344, 372
Cfr9I	CCCGGG	1 cut(s)	334
CseI	GACGC	1 cut(s)	777
CsiI	ACCWGGT	1 cut(s)	346
Csp6I	GTAC	2 cut(s)	457, 481
CviAII	CATG	7 cut(s)	70, 217, 629, 688, 740, 745, 749
CviQI	GTAC	2 cut(s)	457, 481
DdeI	CTNAG	3 cut(s)	376, 453, 795
DpnI	GATC	4 cut(s)	278, 363, 662, 780
DpnII	GATC	4 cut(s)	276, 361, 660, 778
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Ecl136II	GAGCTC	2 cut(s)	21, 226
Eco147I	AGGCCT	1 cut(s)	56
Eco24I	GRGCYC	2 cut(s)	23, 228
Eco47I	GGWCC	3 cut(s)	231, 344, 372
Eco53kI	GAGCTC	2 cut(s)	21, 226
Eco57I	CTGAAG	2 cut(s)	65, 339
Eco88I	CYCGRG	1 cut(s)	334
EcoICRI	GAGCTC	2 cut(s)	21, 226
EcoO109I	RGGNCCY	1 cut(s)	372
EcoRII	CCWGG	2 cut(s)	60, 346
EcoT22I	ATGCAT	1 cut(s)	750
EcoT38I	GRGCYC	2 cut(s)	23, 228
FaeI	CATG	7 cut(s)	73, 220, 632, 691, 743, 748, 752
FatI	CATG	7 cut(s)	69, 216, 628, 687, 739, 744, 748
Fnu4HI	GCNGC	7 cut(s)	50, 167, 318, 668, 693, 772, 803
FokI	GGATG	3 cut(s)	260, 431, 854
FriOI	GRGCYC	2 cut(s)	23, 228
Fsp4HI	GCNGC	7 cut(s)	50, 167, 318, 668, 693, 772, 803
FspBI	CTAG	1 cut(s)	753
GluI	GCNGC	7 cut(s)	50, 167, 318, 668, 693, 772, 803
HaeIII	GGCC	2 cut(s)	56, 179
HapII	CCGG	3 cut(s)	229, 335, 495
HgaI	GACGC	1 cut(s)	777
Hin1II	CATG	7 cut(s)	73, 220, 632, 691, 743, 748, 752
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	1 cut(s)	862
HpaII	CCGG	3 cut(s)	229, 335, 495
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	2 cut(s)	202, 344
Hpy188I	TCNGA	5 cut(s)	594, 613, 675, 767, 861
Hpy188III	TCNNGA	7 cut(s)	28, 98, 229, 265, 575, 620, 788
Hpy8I	GTNNAC	2 cut(s)	202, 344
HpyAV	CCTTC	7 cut(s)	76, 124, 214, 262, 290, 559, 634
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4V	TGCA	7 cut(s)	192, 317, 562, 670, 748, 831, 889
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 833
HpyF3I	CTNAG	3 cut(s)	376, 453, 795
Hsp92II	CATG	7 cut(s)	73, 220, 632, 691, 743, 748, 752
Kpn2I	TCCGGA	1 cut(s)	228
Kzo9I	GATC	4 cut(s)	276, 361, 660, 778
LmnI	GCTCC	5 cut(s)	223, 231, 253, 472, 799
Lsp1109I	GCAGC	6 cut(s)	61, 178, 329, 654, 679, 814
LweI	GCATC	2 cut(s)	622, 679
MabI	ACCWGGT	1 cut(s)	346
MaeI	CTAG	1 cut(s)	753
MalI	GATC	4 cut(s)	278, 363, 662, 780
MboI	GATC	4 cut(s)	276, 361, 660, 778
MboII	GAAGA	8 cut(s)	125, 197, 286, 345, 409, 524, 664, 848
MhlI	GDGCHC	3 cut(s)	23, 228, 717
MluCI	AATT	4 cut(s)	526, 553, 615, 873
MnlI	CCTC	8 cut(s)	67, 127, 169, 363, 385, 581, 784, 810
Mph1103I	ATGCAT	1 cut(s)	750
MroI	TCCGGA	1 cut(s)	228
MseI	TTAA	3 cut(s)	93, 282, 405
MspA1I	CMGCKG	2 cut(s)	359, 452
MspCI	CTTAAG	1 cut(s)	404
MspI	CCGG	3 cut(s)	229, 335, 495
MspR9I	CCNGG	4 cut(s)	62, 335, 336, 348
Mva1269I	GAATGC	1 cut(s)	319
MvaI	CCWGG	2 cut(s)	62, 348
MvnI	CGCG	1 cut(s)	771
MwoI	GCNNNNNNNGC	2 cut(s)	163, 833
NciI	CCSGG	2 cut(s)	335, 336
NdeII	GATC	4 cut(s)	276, 361, 660, 778
NlaIII	CATG	7 cut(s)	73, 220, 632, 691, 743, 748, 752
NlaIV	GGNNCC	1 cut(s)	716
NsiI	ATGCAT	1 cut(s)	750
NspI	RCATGY	1 cut(s)	752
NspV	TTCGAA	2 cut(s)	111, 311
PaeI	GCATGC	1 cut(s)	752
PceI	AGGCCT	1 cut(s)	56
PctI	GAATGC	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	862
PkrI	GCNGC	7 cut(s)	51, 168, 319, 669, 694, 773, 804
PpuMI	RGGWCCY	1 cut(s)	372
PshBI	ATTAAT	1 cut(s)	93
Psp124BI	GAGCTC	2 cut(s)	23, 228
Psp5II	RGGWCCY	1 cut(s)	372
Psp6I	CCWGG	2 cut(s)	60, 346
PspGI	CCWGG	2 cut(s)	60, 346
PspN4I	GGNNCC	1 cut(s)	716
PspPI	GGNCC	3 cut(s)	231, 344, 372
PspPPI	RGGWCCY	1 cut(s)	372
PvuII	CAGCTG	2 cut(s)	359, 452
RsaI	GTAC	2 cut(s)	458, 482
RsaNI	GTAC	2 cut(s)	457, 481
SacI	GAGCTC	2 cut(s)	23, 228
SaqAI	TTAA	3 cut(s)	93, 282, 405
SatI	GCNGC	7 cut(s)	50, 167, 318, 668, 693, 772, 803
Sau3AI	GATC	4 cut(s)	276, 361, 660, 778
Sau96I	GGNCC	3 cut(s)	231, 344, 372
ScrFI	CCNGG	4 cut(s)	62, 335, 336, 348
SduI	GDGCHC	3 cut(s)	23, 228, 717
SexAI	ACCWGGT	1 cut(s)	346
SfaNI	GCATC	2 cut(s)	622, 679
SfcI	CTRYAG	2 cut(s)	160, 170
SfuI	TTCGAA	2 cut(s)	111, 311
SinI	GGWCC	3 cut(s)	231, 344, 372
SmaI	CCCGGG	1 cut(s)	336
SmlI	CTYRAG	2 cut(s)	263, 404
SmoI	CTYRAG	2 cut(s)	263, 404
SphI	GCATGC	1 cut(s)	752
Sse9I	AATT	4 cut(s)	526, 553, 615, 873
SseBI	AGGCCT	1 cut(s)	56
SsiI	CCGC	1 cut(s)	771
SspI	AATATT	2 cut(s)	91, 882
SspMI	CTAG	1 cut(s)	753
SstI	GAGCTC	2 cut(s)	23, 228
StuI	AGGCCT	1 cut(s)	56
StyD4I	CCNGG	4 cut(s)	60, 333, 334, 346
TaaI	ACNGT	1 cut(s)	469
TaqI	TCGA	7 cut(s)	17, 111, 311, 325, 364, 663, 815
TasI	AATT	4 cut(s)	526, 553, 615, 873
TatI	WGTACW	1 cut(s)	456
TauI	GCSGC	1 cut(s)	774
TfiI	GAWTC	1 cut(s)	862
Tru1I	TTAA	3 cut(s)	93, 282, 405
Tru9I	TTAA	3 cut(s)	93, 282, 405
TscAI	CASTG	1 cut(s)	474
TseI	GCWGC	6 cut(s)	49, 166, 317, 667, 692, 802
TspDTI	ATGAA	3 cut(s)	17, 198, 233
TspGWI	ACGGA	1 cut(s)	791
TspMI	CCCGGG	1 cut(s)	334
TspRI	CASTG	1 cut(s)	474
Vha464I	CTTAAG	1 cut(s)	404
VpaK11BI	GGWCC	3 cut(s)	231, 344, 372
VspI	ATTAAT	1 cut(s)	93
XapI	RAATTY	3 cut(s)	526, 553, 615
XceI	RCATGY	1 cut(s)	752
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XmaI	CCCGGG	1 cut(s)	334
XspI	CTAG	1 cut(s)	753
Zsp2I	ATGCAT	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.