Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003204

Physical Location & Seq

Genomic Coordinates Reverse (-)

1700077 .. 1700988

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G036000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAACGACTTATTTTCGAGCTCGTTCAAGAAATACACTGACCTGAAACAGCAGGCCTACCTGGACGATATGGAGGCCGGGAAGGAGACTGTTAATCTTGACAAGTTCTTCGAAGATGTCGAGAATGTGAAGGAGGACATGAGACAGGTTGATAAGCTGTACAAGCAGCTACAAGATGCCAATGAAGAGAGCAAGACTGTGCACAATGCTAAAACCATGAAAGAGCTCCGAACCCGCATGGACTTGGATGTCGAGCAGGTCCTTAAGAAGGTCAAAATCATAAAGGGAAAGCTTGAAGGTTTGGAGCGTTCCAACGCAACTCACAGAAACCTTCCTGGTTGTGGCCCTGGCTCCTCCGCGGATCGAACCAGGACCTCAGTGGTTAGTGGTTTGGGGAAGAAACTCAAGGACATGATGGATGACTTTCAGGGATTGAGAGGTAGAATGACATCTGAATATAAAGAAACAATAGAACGCAGGTATTTTACTATAACCGGAGAGAAAGCGAGTGAGGAAACTATCGAAAATTTGATATCGAGTGGAGAAAGTGAGAGCTTTCTGCAGAAGGCTATTCAAGAACAGGGGAGAGGTCAGATTTTGGACACCATATCAGAAATGCAAGAAAGACATGATGCTGTGAAGGAGATTGAGAAGAATTTGATTGAGCTCCATCAGATATTCTTGGACATGGCTGCTCTGGTTGAAGCACAGGGTCACCAACTCAATGACATTGAGAGCCATGTCATGCATGCTAGCTCGTTTGTCAGACGCGGCACCGACAATCTTCAAGAGGCCAAAGAACAGCAGAAGAAATCAAGGAAGTGGACATGCATTGCTATAATTCTTGGAATAATCCTCGTCATTCTCCTCCTAATTCCGATTTTGATTCAAGTTTTGCCTCATATGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000149 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016050 GO:0016192 GO:0022406 GO:0022414 GO:0030133 GO:0030154 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032940 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044706 GO:0046903 GO:0048278 GO:0048284 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051704 GO:0060560 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097708 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

304

Amino Acids

34.66

Weight (kDa)

5.85

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11250 AT1G61290 AT1G61290 AT4G03330
fragaria_vesca	FvH4_3g04130 FvH4_6g44820
malus_domestica	MD05G1324600.v1.1 MD10G1302400.v1.1 MD17G1082900.v1.1
prunus_persica	Prupe.3G232300_v2.0.a1 Prupe.4G036000_v2.0.a1
pyrus_communis	pycom05g29880 pycom10g25490
rosa_chinensis	RchiOBHm_Chr2g0162001 RchiOBHm_Chr5g0006581
rosa_laevigata	RLG00000021314 RLG00000031401
rosa_multiflora	Rmu_co8449309.1_g000002 Rmu_co8484739.1_g000001 Rmu_sc0005741.1_g000004 Rmu_sc0008428.1_g000004 Rmu_sc0011154.1_g000007 Rmu_sc0038528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069460 Rroxscaffold_2G00088410
rosa_rugosa	Rorug02G0493900 Rorug04G0422800
rosa_samantha	Rh2AG559800 Rh2BG573200 Rh2CG543400 Rh2DG583000 Rh5AG049900 Rh5BG049200 Rh5CG057600 Rh5DG048600
rosa_wichuraiana	Rw2G046330 Rw5G005000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
Acc36I	ACCTGC	2 cut(s)	247, 468
AccB1I	GGYRCC	1 cut(s)	773
AccII	CGCG	2 cut(s)	359, 771
AciI	CCGC	4 cut(s)	235, 357, 359, 771
AclWI	GGATC	1 cut(s)	369
AcsI	RAATTY	2 cut(s)	526, 655
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	268, 341
AflII	CTTAAG	1 cut(s)	263
AgsI	TTSAA	6 cut(s)	28, 296, 575, 704, 788, 890
AjnI	CCWGG	4 cut(s)	60, 334, 346, 368
AluBI	AGCT	8 cut(s)	21, 157, 169, 226, 292, 555, 667, 756
AluI	AGCT	8 cut(s)	21, 157, 169, 226, 292, 555, 667, 756
Alw21I	GWGCWC	4 cut(s)	23, 204, 228, 669
Alw26I	GTCTC	2 cut(s)	80, 136
Alw44I	GTGCAC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	369
AoxI	GGCC	4 cut(s)	54, 75, 343, 792
ApaLI	GTGCAC	1 cut(s)	200
ApeKI	GCWGC	2 cut(s)	166, 692
ApoI	RAATTY	2 cut(s)	526, 655
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
AspS9I	GGNCC	3 cut(s)	259, 344, 372
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	707
AsuII	TTCGAA	1 cut(s)	111
AsuNHI	GCTAGC	1 cut(s)	752
AvaII	GGWCC	2 cut(s)	259, 372
BaeGI	GKGCMC	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	773
BanII	GRGCYC	3 cut(s)	23, 228, 669
Bbv12I	GWGCWC	4 cut(s)	23, 204, 228, 669
BbvI	GCAGC	2 cut(s)	178, 679
BccI	CCATC	2 cut(s)	409, 678
BciT130I	CCWGG	4 cut(s)	62, 336, 348, 370
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	80, 136
BfaI	CTAG	1 cut(s)	753
BfmI	CTRYAG	1 cut(s)	560
BfrI	CTTAAG	1 cut(s)	263
BfuAI	ACCTGC	2 cut(s)	247, 468
BisI	GCNGC	3 cut(s)	167, 693, 772
BlsI	GCNGC	3 cut(s)	168, 694, 773
Bme1390I	CCNGG	5 cut(s)	62, 79, 336, 348, 370
Bme18I	GGWCC	2 cut(s)	259, 372
BmgT120I	GGNCC	3 cut(s)	259, 344, 372
BmiI	GGNNCC	2 cut(s)	352, 775
BmrFI	CCNGG	5 cut(s)	62, 79, 336, 348, 370
BmsI	GCATC	2 cut(s)	166, 622
BmtI	GCTAGC	1 cut(s)	756
Bpu14I	TTCGAA	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	389
BpuMI	CCSGG	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	346, 357
BsaWI	WCCGGW	1 cut(s)	494
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 341
Bse3DI	GCAATG	1 cut(s)	831
BseBI	CCWGG	4 cut(s)	62, 336, 348, 370
BseDI	CCNNGG	2 cut(s)	346, 357
BseGI	GGATG	2 cut(s)	253, 424
BseLI	CCNNNNNNNGG	2 cut(s)	268, 341
BseMI	GCAATG	1 cut(s)	831
BseMII	CTCAG	1 cut(s)	390
BseRI	GAGGAG	2 cut(s)	343, 857
BseSI	GKGCMC	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	178, 679
Bsh1236I	CGCG	2 cut(s)	359, 771
BshFI	GGCC	4 cut(s)	56, 77, 345, 794
BshNI	GGYRCC	1 cut(s)	773
BsiHKAI	GWGCWC	4 cut(s)	23, 204, 228, 669
BsiSI	CCGG	2 cut(s)	78, 495
BslI	CCNNNNNNNGG	2 cut(s)	268, 341
BsmAI	GTCTC	2 cut(s)	80, 136
BsnI	GGCC	4 cut(s)	56, 77, 345, 794
Bsp119I	TTCGAA	1 cut(s)	111
Bsp1286I	GDGCHC	4 cut(s)	23, 204, 228, 669
Bsp1407I	TGTACA	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	361
BspACI	CCGC	4 cut(s)	235, 357, 359, 771
BspANI	GGCC	4 cut(s)	56, 77, 345, 794
BspCNI	CTCAG	1 cut(s)	389
BspFNI	CGCG	2 cut(s)	359, 771
BspLI	GGNNCC	2 cut(s)	352, 775
BspMAI	CTGCAG	1 cut(s)	564
BspMI	ACCTGC	2 cut(s)	247, 468
BspOI	GCTAGC	1 cut(s)	756
BspPI	GGATC	1 cut(s)	369
BspT104I	TTCGAA	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	773
BspTI	CTTAAG	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	831
BsrGI	TGTACA	1 cut(s)	159
BssECI	CCNNGG	2 cut(s)	346, 357
BssMI	GATC	1 cut(s)	361
Bst2UI	CCWGG	4 cut(s)	62, 336, 348, 370
Bst4CI	ACNGT	2 cut(s)	91, 199
Bst6I	CTCTTC	1 cut(s)	180
BstAFI	CTTAAG	1 cut(s)	263
BstAUI	TGTACA	1 cut(s)	159
BstBI	TTCGAA	1 cut(s)	111
BstC8I	GCNNGC	3 cut(s)	54, 750, 754
BstDEI	CTNAG	1 cut(s)	376
BstDSI	CCRYGG	1 cut(s)	357
BstEII	GGTNACC	1 cut(s)	713
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	253, 424
BstFNI	CGCG	2 cut(s)	359, 771
BstKTI	GATC	1 cut(s)	364
BstMAI	GTCTC	2 cut(s)	80, 136
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNI	CCWGG	4 cut(s)	62, 336, 348, 370
BstNSI	RCATGY	2 cut(s)	752, 831
BstPI	GGTNACC	1 cut(s)	713
BstSCI	CCNGG	5 cut(s)	60, 77, 334, 346, 368
BstSFI	CTRYAG	1 cut(s)	560
BstSLI	GKGCMC	1 cut(s)	204
BstUI	CGCG	2 cut(s)	359, 771
BstV1I	GCAGC	2 cut(s)	178, 679
BsuRI	GGCC	4 cut(s)	56, 77, 345, 794
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	253, 424
BtsIMutI	CAGTG	2 cut(s)	36, 384
BveI	ACCTGC	2 cut(s)	247, 468
Cac8I	GCNNGC	3 cut(s)	54, 750, 754
Cfr13I	GGNCC	3 cut(s)	259, 344, 372
Cfr42I	CCGCGG	1 cut(s)	360
CseI	GACGC	1 cut(s)	777
Csp6I	GTAC	1 cut(s)	160
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	1 cut(s)	376
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Ecl136II	GAGCTC	3 cut(s)	21, 226, 667
Eco147I	AGGCCT	1 cut(s)	56
Eco24I	GRGCYC	3 cut(s)	23, 228, 669
Eco32I	GATATC	1 cut(s)	534
Eco47I	GGWCC	2 cut(s)	259, 372
Eco53kI	GAGCTC	3 cut(s)	21, 226, 667
Eco91I	GGTNACC	1 cut(s)	713
EcoICRI	GAGCTC	3 cut(s)	21, 226, 667
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoO109I	RGGNCCY	2 cut(s)	259, 372
EcoO65I	GGTNACC	1 cut(s)	713
EcoRII	CCWGG	4 cut(s)	60, 334, 346, 368
EcoRV	GATATC	1 cut(s)	534
EcoT22I	ATGCAT	2 cut(s)	750, 833
EcoT38I	GRGCYC	3 cut(s)	23, 228, 669
FauI	CCCGC	1 cut(s)	242
FauNDI	CATATG	1 cut(s)	903
Fnu4HI	GCNGC	3 cut(s)	167, 693, 772
FokI	GGATG	2 cut(s)	260, 431
FriOI	GRGCYC	3 cut(s)	23, 228, 669
Fsp4HI	GCNGC	3 cut(s)	167, 693, 772
FspBI	CTAG	1 cut(s)	753
GluI	GCNGC	3 cut(s)	167, 693, 772
HaeIII	GGCC	4 cut(s)	56, 77, 345, 794
HapII	CCGG	2 cut(s)	78, 495
HgaI	GACGC	1 cut(s)	777
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	1 cut(s)	886
HpaII	CCGG	2 cut(s)	78, 495
HphI	GGTGA	1 cut(s)	707
Hpy166II	GTNNAC	2 cut(s)	202, 825
Hpy188I	TCNGA	7 cut(s)	230, 454, 594, 613, 675, 767, 879
Hpy188III	TCNNGA	5 cut(s)	28, 98, 121, 575, 788
Hpy8I	GTNNAC	2 cut(s)	202, 825
HpyAV	CCTTC	7 cut(s)	76, 124, 262, 290, 341, 559, 634
HpyCH4III	ACNGT	2 cut(s)	91, 199
HpyCH4V	TGCA	5 cut(s)	202, 562, 619, 748, 831
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	1 cut(s)	376
KspI	CCGCGG	1 cut(s)	360
Kzo9I	GATC	1 cut(s)	361
LmnI	GCTCC	4 cut(s)	231, 304, 356, 672
Lsp1109I	GCAGC	2 cut(s)	178, 679
LweI	GCATC	2 cut(s)	166, 622
MaeI	CTAG	1 cut(s)	753
MaeIII	GTNAC	1 cut(s)	713
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	7 cut(s)	100, 125, 197, 409, 664, 776, 820
MhlI	GDGCHC	4 cut(s)	23, 204, 228, 669
MluCI	AATT	4 cut(s)	526, 655, 840, 873
MmeI	TCCRAC	1 cut(s)	336
Mph1103I	ATGCAT	2 cut(s)	750, 833
MseI	TTAA	2 cut(s)	93, 264
MspA1I	CMGCKG	1 cut(s)	359
MspCI	CTTAAG	1 cut(s)	263
MspI	CCGG	2 cut(s)	78, 495
MspR9I	CCNGG	5 cut(s)	62, 79, 336, 348, 370
MvaI	CCWGG	4 cut(s)	62, 336, 348, 370
MvnI	CGCG	2 cut(s)	359, 771
MwoI	GCNNNNNNNGC	1 cut(s)	163
NciI	CCSGG	1 cut(s)	79
NdeI	CATATG	1 cut(s)	903
NdeII	GATC	1 cut(s)	361
NheI	GCTAGC	1 cut(s)	752
NlaIV	GGNNCC	2 cut(s)	352, 775
NmuCI	GTSAC	1 cut(s)	713
NsiI	ATGCAT	2 cut(s)	750, 833
NspI	RCATGY	2 cut(s)	752, 831
NspV	TTCGAA	1 cut(s)	111
PaeI	GCATGC	1 cut(s)	752
PceI	AGGCCT	1 cut(s)	56
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	886
PkrI	GCNGC	3 cut(s)	168, 694, 773
PpuMI	RGGWCCY	2 cut(s)	259, 372
Psp124BI	GAGCTC	3 cut(s)	23, 228, 669
Psp5II	RGGWCCY	2 cut(s)	259, 372
Psp6I	CCWGG	4 cut(s)	60, 334, 346, 368
PspEI	GGTNACC	1 cut(s)	713
PspGI	CCWGG	4 cut(s)	60, 334, 346, 368
PspN4I	GGNNCC	2 cut(s)	352, 775
PspPI	GGNCC	3 cut(s)	259, 344, 372
PspPPI	RGGWCCY	2 cut(s)	259, 372
PstI	CTGCAG	1 cut(s)	564
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SacI	GAGCTC	3 cut(s)	23, 228, 669
SacII	CCGCGG	1 cut(s)	360
SaqAI	TTAA	2 cut(s)	93, 264
SatI	GCNGC	3 cut(s)	167, 693, 772
Sau3AI	GATC	1 cut(s)	361
Sau96I	GGNCC	3 cut(s)	259, 344, 372
ScrFI	CCNGG	5 cut(s)	62, 79, 336, 348, 370
SduI	GDGCHC	4 cut(s)	23, 204, 228, 669
SfaNI	GCATC	2 cut(s)	166, 622
SfcI	CTRYAG	1 cut(s)	560
Sfr303I	CCGCGG	1 cut(s)	360
SfuI	TTCGAA	1 cut(s)	111
SgrBI	CCGCGG	1 cut(s)	360
SinI	GGWCC	2 cut(s)	259, 372
SmlI	CTYRAG	2 cut(s)	263, 404
SmoI	CTYRAG	2 cut(s)	263, 404
SphI	GCATGC	1 cut(s)	752
Sse9I	AATT	4 cut(s)	526, 655, 840, 873
SseBI	AGGCCT	1 cut(s)	56
SsiI	CCGC	4 cut(s)	235, 357, 359, 771
SspMI	CTAG	1 cut(s)	753
SstI	GAGCTC	3 cut(s)	23, 228, 669
StuI	AGGCCT	1 cut(s)	56
StyD4I	CCNGG	5 cut(s)	60, 77, 334, 346, 368
TaaI	ACNGT	2 cut(s)	91, 199
TaqI	TCGA	7 cut(s)	17, 111, 120, 252, 364, 522, 536
TasI	AATT	4 cut(s)	526, 655, 840, 873
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	1 cut(s)	774
TfiI	GAWTC	1 cut(s)	886
Tru1I	TTAA	2 cut(s)	93, 264
Tru9I	TTAA	2 cut(s)	93, 264
TscAI	CASTG	2 cut(s)	43, 384
TseFI	GTSAC	1 cut(s)	713
TseI	GCWGC	2 cut(s)	166, 692
Tsp45I	GTSAC	1 cut(s)	713
TspDTI	ATGAA	3 cut(s)	17, 198, 233
TspRI	CASTG	2 cut(s)	43, 384
Vha464I	CTTAAG	1 cut(s)	263
VneI	GTGCAC	1 cut(s)	200
VpaK11BI	GGWCC	2 cut(s)	259, 372
XagI	CCTNNNNNAGG	1 cut(s)	266
XapI	RAATTY	2 cut(s)	526, 655
XceI	RCATGY	2 cut(s)	752, 831
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376
XspI	CTAG	1 cut(s)	753
Zsp2I	ATGCAT	2 cut(s)	750, 833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.