Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010364

Physical Location & Seq

Genomic Coordinates Reverse (-)

4267074 .. 4268982

Gene Structure 1909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12520.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCATCAATTCTCAGGTCAGTGGCAACGACTTCAGCCGTCGTAGCCGCCGCCTCTGCGATTCCCATCGCGATCGCCTTCTCTTCTTCTTCTTCTTCTTCCTCTACCAACCCCAAATCTCAATCTCTCAATTTCTCCTTCCTCTCCCGATCGTCTCCACGTCTCTTGGGACTTTCACGAAGCTTCGTTAGCTCTCCGATGGCGACTGCTCTCACTTCTGATCGTAATCTCCATCAGGAGGATCGAGCCATGCCTCAGCTTCTTACTGAGTTTATGGTGGATATGACATGTGAGGGTTGTGTTAATGCTGTGAAGAACAAATTAGAAACCATTGAAGGTATTGAGAAAGTGGAGGTGGATTTGTCCAATCAAGTTGTGAGGATACTTGGATCTTCCCCTGTTAAGGCTATGACTCAAGCTTTGGAGCAAACTGGTCGAAAAGCTCGCTTAATTGGACAAGGTGTTCCTCAAGATTTCTTAGTCTCAGCTGCAGTAGCAGAATTCAAAGGCCCTGACATTTTCGGGGTAGTCCGATTTGCTCAGGTCAGTATGGAACTTGCAAGAATCGAAGCCAACTTTACCGGTTTGTCACCCGGAACCCACAGCTGGTGTATCAACGAGTATGGAGATCTCACAAACGGAGCAGCCAGCACAGGGAGCTTGTACAATCCATTTCAAGATCAAACTGGCACAGAGCCATTGGGAGACCTGGGAACACTAGAGGCAGACAAAAACGGAGAGGCCTTTTATTCGGGAAAGAAAGAGAAACTCAAGGTTGCAGACCTTATCGGGAGAGCCGTCGTGGTGTACAAGACCGATGATAATAAGTCAGGCCCCGGATTGACCGCCGCAGTGATTGCTAGAAGCGCAGGGGTTGGAGAAAACTACAAAAAACTTTGTTCTTGTGATGGTACTGTCATATGGGAAGCTACAAACAGCGATTTCGTGGCCAGTAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006878 GO:0008047 GO:0008150 GO:0008270 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016530 GO:0016531 GO:0016532 GO:0019725 GO:0030003 GO:0030234 GO:0042592 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050790 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0065009 GO:0098771 GO:0098772 GO:0140104

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

HMA Sod_Cu

Protein Analysis

320

Amino Acids

33.85

Weight (kDa)

5.6

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Cu	PF00080	39 - 140	1.6e-19	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12520 AT1G12520 AT1G12520
fragaria_vesca	FvH4_5g01090
malus_domestica	MD00G1069800.v1.1 MD04G1072900.v1.1
prunus_persica	Prupe.5G084900_v2.0.a1 Prupe.5G084900_v2.0.a1
pyrus_communis	pycom04g06600 pycom06g06690
rosa_chinensis	RchiOBHm_Chr7g0200231
rosa_laevigata	RLG00000003742
rosa_multiflora	Rmu_sc0019284.1_g000001 Rmu_sc0025955.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256210
rosa_rugosa	Rorug07G0058600
rosa_samantha	Rh7AG184100 Rh7BG186800 Rh7CG194500 Rh7DG188200
rosa_wichuraiana	Rw7G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	71
AciI	CCGC	4 cut(s)	48, 51, 846, 849
AclWI	GGATC	2 cut(s)	249, 397
AcoI	YGGCCR	1 cut(s)	948
AcsI	RAATTY	1 cut(s)	500
AcuI	CTGAAG	1 cut(s)	18
AfaI	GTAC	3 cut(s)	665, 809, 913
AfiI	CCNNNNNNNGG	4 cut(s)	238, 403, 606, 654
AflIII	ACRYGT	1 cut(s)	287
AgeI	ACCGGT	1 cut(s)	581
AgsI	TTSAA	3 cut(s)	335, 505, 677
AjiI	CACGTC	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	708
AloI	GAACNNNNNNTCC	2 cut(s)	447, 479
AluBI	AGCT	9 cut(s)	183, 192, 259, 419, 443, 488, 606, 660, 929
AluI	AGCT	9 cut(s)	183, 192, 259, 419, 443, 488, 606, 660, 929
Alw26I	GTCTC	4 cut(s)	159, 167, 487, 699
AlwI	GGATC	2 cut(s)	249, 397
AoxI	GGCC	4 cut(s)	508, 741, 832, 948
ApeKI	GCWGC	2 cut(s)	488, 644
ApoI	RAATTY	1 cut(s)	500
ArsI	GACNNNNNNTTYG	2 cut(s)	403, 435
AsiGI	ACCGGT	1 cut(s)	581
AsiSI	GCGATCGC	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	869
AspS9I	GGNCC	2 cut(s)	509, 833
AsuC2I	CCSGG	2 cut(s)	594, 837
AsuHPI	GGTGA	1 cut(s)	582
BalI	TGGCCA	1 cut(s)	950
BbvCI	CCTCAGC	1 cut(s)	255
BbvI	GCAGC	2 cut(s)	475, 656
BccI	CCATC	4 cut(s)	74, 193, 240, 902
BceAI	ACGGC	2 cut(s)	23, 782
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	1 cut(s)	710
BciVI	GTATCC	1 cut(s)	375
BcnI	CCSGG	2 cut(s)	594, 837
BcoDI	GTCTC	4 cut(s)	159, 167, 487, 699
BfaI	CTAG	2 cut(s)	719, 861
BfmI	CTRYAG	1 cut(s)	489
BfuI	GTATCC	1 cut(s)	375
BglII	AGATCT	1 cut(s)	628
BisI	GCNGC	5 cut(s)	48, 51, 489, 645, 849
BlsI	GCNGC	5 cut(s)	49, 52, 490, 646, 850
Bme1390I	CCNGG	3 cut(s)	594, 710, 837
BmgBI	CACGTC	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	509, 833
BmiI	GGNNCC	2 cut(s)	598, 835
BmrFI	CCNGG	3 cut(s)	594, 710, 837
BmsI	GCATC	1 cut(s)	14
Bpu10I	CCTNAGC	2 cut(s)	255, 540
BpuEI	CTTGAG	3 cut(s)	399, 453, 755
BpuMI	CCSGG	2 cut(s)	594, 837
BsaBI	GATNNNNATC	2 cut(s)	65, 225
BsaI	GGTCTC	1 cut(s)	699
BsaJI	CCNNGG	2 cut(s)	709, 835
BsaWI	WCCGGW	1 cut(s)	581
Bsc4I	CCNNNNNNNGG	4 cut(s)	238, 403, 606, 654
Bse118I	RCCGGY	1 cut(s)	581
Bse1I	ACTGG	3 cut(s)	436, 691, 951
Bse8I	GATNNNNATC	2 cut(s)	65, 225
BseBI	CCWGG	1 cut(s)	710
BseDI	CCNNGG	2 cut(s)	709, 835
BseJI	GATNNNNATC	2 cut(s)	65, 225
BseLI	CCNNNNNNNGG	4 cut(s)	238, 403, 606, 654
BseMII	CTCAG	5 cut(s)	28, 258, 269, 498, 554
BseNI	ACTGG	3 cut(s)	436, 691, 951
BseXI	GCAGC	2 cut(s)	475, 656
Bsh1236I	CGCG	1 cut(s)	71
Bsh1285I	CGRYCG	2 cut(s)	75, 152
BshFI	GGCC	4 cut(s)	510, 743, 834, 950
BshTI	ACCGGT	1 cut(s)	581
BsiEI	CGRYCG	2 cut(s)	75, 152
BsiSI	CCGG	3 cut(s)	582, 594, 837
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	4 cut(s)	238, 403, 606, 654
BsmAI	GTCTC	4 cut(s)	159, 167, 487, 699
BsmBI	CGTCTC	2 cut(s)	159, 167
BsmFI	GGGAC	1 cut(s)	183
BsnI	GGCC	4 cut(s)	510, 743, 834, 950
Bso31I	GGTCTC	1 cut(s)	699
Bsp1407I	TGTACA	2 cut(s)	663, 807
Bsp143I	GATC	7 cut(s)	72, 149, 220, 241, 389, 628, 679
Bsp68I	TCGCGA	1 cut(s)	71
BspACI	CCGC	4 cut(s)	48, 51, 846, 849
BspANI	GGCC	4 cut(s)	510, 743, 834, 950
BspCNI	CTCAG	5 cut(s)	27, 259, 268, 497, 553
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	2 cut(s)	598, 835
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	2 cut(s)	249, 397
BspTNI	GGTCTC	1 cut(s)	699
BsrFI	RCCGGY	1 cut(s)	581
BsrGI	TGTACA	2 cut(s)	663, 807
BsrI	ACTGG	3 cut(s)	436, 691, 951
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	2 cut(s)	709, 835
BssMI	GATC	7 cut(s)	72, 149, 220, 241, 389, 628, 679
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	1 cut(s)	916
Bst6I	CTCTTC	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	857
BstAUI	TGTACA	2 cut(s)	663, 807
BstC8I	GCNNGC	2 cut(s)	445, 649
BstDEI	CTNAG	6 cut(s)	14, 255, 267, 478, 484, 540
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	869
BstKTI	GATC	7 cut(s)	75, 152, 223, 244, 392, 631, 682
BstMAI	GTCTC	4 cut(s)	159, 167, 487, 699
BstMBI	GATC	7 cut(s)	72, 149, 220, 241, 389, 628, 679
BstMCI	CGRYCG	2 cut(s)	75, 152
BstMWI	GCNNNNNNNGC	7 cut(s)	44, 56, 189, 494, 657, 857, 866
BstNI	CCWGG	1 cut(s)	710
BstNSI	RCATGY	1 cut(s)	291
BstSCI	CCNGG	3 cut(s)	592, 708, 835
BstSFI	CTRYAG	1 cut(s)	489
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	2 cut(s)	475, 656
BstX2I	RGATCY	2 cut(s)	389, 628
BstYI	RGATCY	2 cut(s)	389, 628
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	4 cut(s)	510, 743, 834, 950
BtgZI	GCGATG	1 cut(s)	52
BtrI	CACGTC	1 cut(s)	161
BtsI	GCAGTG	1 cut(s)	858
BtsIMutI	CAGTG	2 cut(s)	27, 858
BtuMI	TCGCGA	1 cut(s)	71
Cac8I	GCNNGC	2 cut(s)	445, 649
CfoI	GCGC	1 cut(s)	869
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	2 cut(s)	509, 833
Csp6I	GTAC	3 cut(s)	664, 808, 912
CspAI	ACCGGT	1 cut(s)	581
CspCI	CAANNNNNGTGG	2 cut(s)	147, 182
CviAII	CATG	2 cut(s)	250, 288
CviQI	GTAC	3 cut(s)	664, 808, 912
DdeI	CTNAG	6 cut(s)	14, 255, 267, 478, 484, 540
DpnI	GATC	7 cut(s)	74, 151, 222, 243, 391, 630, 681
DpnII	GATC	7 cut(s)	72, 149, 220, 241, 389, 628, 679
EaeI	YGGCCR	1 cut(s)	948
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco147I	AGGCCT	1 cut(s)	743
Eco31I	GGTCTC	1 cut(s)	699
Eco57I	CTGAAG	1 cut(s)	18
EcoO109I	RGGNCCY	2 cut(s)	509, 833
EcoRI	GAATTC	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	708
Esp3I	CGTCTC	2 cut(s)	159, 167
FaeI	CATG	2 cut(s)	253, 291
FaiI	YATR	9 cut(s)	251, 275, 284, 289, 410, 551, 624, 920, 922
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	2 cut(s)	249, 287
FauNDI	CATATG	1 cut(s)	920
Fnu4HI	GCNGC	5 cut(s)	48, 51, 489, 645, 849
Fsp4HI	GCNGC	5 cut(s)	48, 51, 489, 645, 849
FspBI	CTAG	2 cut(s)	719, 861
GlaI	GCGC	1 cut(s)	868
GluI	GCNGC	5 cut(s)	48, 51, 489, 645, 849
HaeIII	GGCC	4 cut(s)	510, 743, 834, 950
HapII	CCGG	3 cut(s)	582, 594, 837
HhaI	GCGC	1 cut(s)	869
Hin1II	CATG	2 cut(s)	253, 291
Hin6I	GCGC	1 cut(s)	867
HinP1I	GCGC	1 cut(s)	867
HindIII	AAGCTT	2 cut(s)	181, 417
HinfI	GANTC	3 cut(s)	61, 412, 564
HpaII	CCGG	3 cut(s)	582, 594, 837
HphI	GGTGA	1 cut(s)	582
Hpy166II	GTNNAC	1 cut(s)	808
Hpy188I	TCNGA	3 cut(s)	198, 220, 533
Hpy188III	TCNNGA	8 cut(s)	70, 147, 177, 236, 470, 677, 753, 790
Hpy8I	GTNNAC	1 cut(s)	808
Hpy99I	CGWCG	2 cut(s)	44, 803
HpyAV	CCTTC	3 cut(s)	88, 148, 329
HpyCH4III	ACNGT	1 cut(s)	916
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	3 cut(s)	491, 560, 779
HpyF10VI	GCNNNNNNNGC	7 cut(s)	44, 56, 189, 494, 657, 857, 866
HpyF3I	CTNAG	6 cut(s)	14, 255, 267, 478, 484, 540
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	2 cut(s)	253, 291
HspAI	GCGC	1 cut(s)	867
Kzo9I	GATC	7 cut(s)	72, 149, 220, 241, 389, 628, 679
LmnI	GCTCC	3 cut(s)	424, 641, 657
Lsp1109I	GCAGC	2 cut(s)	475, 656
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	719, 861
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	588
MalI	GATC	7 cut(s)	74, 151, 222, 243, 391, 630, 681
MboI	GATC	7 cut(s)	72, 149, 220, 241, 389, 628, 679
MboII	GAAGA	8 cut(s)	75, 78, 81, 84, 87, 90, 325, 384
MflI	RGATCY	2 cut(s)	389, 628
MlsI	TGGCCA	1 cut(s)	950
MluCI	AATT	5 cut(s)	9, 130, 320, 450, 500
MluNI	TGGCCA	1 cut(s)	950
MlyI	GAGTC	1 cut(s)	406
MmeI	TCCRAC	1 cut(s)	856
Mox20I	TGGCCA	1 cut(s)	950
MscI	TGGCCA	1 cut(s)	950
MseI	TTAA	4 cut(s)	303, 402, 449, 961
Msp20I	TGGCCA	1 cut(s)	950
MspA1I	CMGCKG	2 cut(s)	488, 606
MspI	CCGG	3 cut(s)	582, 594, 837
MspR9I	CCNGG	3 cut(s)	594, 710, 837
MvaI	CCWGG	1 cut(s)	710
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	7 cut(s)	44, 56, 189, 494, 657, 857, 866
NciI	CCSGG	2 cut(s)	594, 837
NdeI	CATATG	1 cut(s)	920
NdeII	GATC	7 cut(s)	72, 149, 220, 241, 389, 628, 679
NlaIII	CATG	2 cut(s)	253, 291
NlaIV	GGNNCC	2 cut(s)	598, 835
NmuCI	GTSAC	1 cut(s)	588
NruI	TCGCGA	1 cut(s)	71
NspI	RCATGY	1 cut(s)	291
PceI	AGGCCT	1 cut(s)	743
PciI	ACATGT	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	1 cut(s)	795
PfeI	GAWTC	2 cut(s)	61, 564
PinAI	ACCGGT	1 cut(s)	581
PkrI	GCNGC	5 cut(s)	49, 52, 490, 646, 850
Ple19I	CGATCG	2 cut(s)	75, 152
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PscI	ACATGT	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	708
PspGI	CCWGG	1 cut(s)	708
PspN4I	GGNNCC	2 cut(s)	598, 835
PspPI	GGNCC	2 cut(s)	509, 833
PstI	CTGCAG	1 cut(s)	493
PsuI	RGATCY	2 cut(s)	389, 628
PvuI	CGATCG	2 cut(s)	75, 152
PvuII	CAGCTG	2 cut(s)	488, 606
RgaI	GCGATCGC	1 cut(s)	75
RruI	TCGCGA	1 cut(s)	71
RsaI	GTAC	3 cut(s)	665, 809, 913
RsaNI	GTAC	3 cut(s)	664, 808, 912
SaqAI	TTAA	4 cut(s)	303, 402, 449, 961
SatI	GCNGC	5 cut(s)	48, 51, 489, 645, 849
Sau3AI	GATC	7 cut(s)	72, 149, 220, 241, 389, 628, 679
Sau96I	GGNCC	2 cut(s)	509, 833
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	3 cut(s)	594, 710, 837
SfaAI	GCGATCGC	1 cut(s)	75
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	489
SgfI	GCGATCGC	1 cut(s)	75
SmlI	CTYRAG	3 cut(s)	414, 468, 770
SmoI	CTYRAG	3 cut(s)	414, 468, 770
Sse9I	AATT	5 cut(s)	9, 130, 320, 450, 500
SseBI	AGGCCT	1 cut(s)	743
SsiI	CCGC	4 cut(s)	48, 51, 846, 849
SspMI	CTAG	2 cut(s)	719, 861
StuI	AGGCCT	1 cut(s)	743
StyD4I	CCNGG	3 cut(s)	592, 708, 835
TaaI	ACNGT	1 cut(s)	916
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	3 cut(s)	244, 436, 567
TaqII	GACCGA	1 cut(s)	830
TasI	AATT	5 cut(s)	9, 130, 320, 450, 500
TatI	WGTACW	2 cut(s)	663, 807
TauI	GCSGC	3 cut(s)	50, 53, 851
TfiI	GAWTC	2 cut(s)	61, 564
Tru1I	TTAA	4 cut(s)	303, 402, 449, 961
Tru9I	TTAA	4 cut(s)	303, 402, 449, 961
TscAI	CASTG	2 cut(s)	27, 858
TseFI	GTSAC	1 cut(s)	588
TseI	GCWGC	2 cut(s)	488, 644
Tsp45I	GTSAC	1 cut(s)	588
TspGWI	ACGGA	2 cut(s)	654, 750
TspRI	CASTG	2 cut(s)	27, 858
XapI	RAATTY	1 cut(s)	500
XceI	RCATGY	1 cut(s)	291
XspI	CTAG	2 cut(s)	719, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.