Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010364

Physical Location & Seq

Genomic Coordinates Forward (+)

18070250 .. 18073142

Gene Structure 2893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17920

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCATTTCTGAGGTCAGTGGCCACCACTAGTGCCATAGCTGCCTCTCTATTACCCGCCGCCATTGCCCTTTCTTCTTCTTCTTCTTCCTCTCAATCTTTCCGATTCCCTAAATCCCAAAACATCTCCTTTTTCTCCTCCTCCTCCTCCACCCCAAACCCAAAACCTCTGTTCCTCGCTACAAGCCTCACCAGCTCTCCCTCAGCTCTCCACATGGACGCGCCCACATCGGAACAGAAGCCCTCCTCTCAGAGTGATGCTGTATTGCCAGAGCTACTGACAGAGTACATGGTAGACATGAAATGTGAGAGTTGTGTTAAGGCTGTCAAGAATAAGTTACAAGTTGTTGATGGGGTTAAAAGTGTAGAGGCGGACCTCGACACCCAAGTTGTTAGGATTCTGGGTGCAACCCCTCTGAAGACCATGACTGAAGCTCTCGAGCAGACAGGTCGAAAAGCGAGATTAATTGGGCAGGGGATCCCAGAAGATTTCTTGGTTTCCGCTGCTGTCGCTGAATTTAAAGGTCCAGATGTTTTTGGTGTGGTTCGATTTGCTCAGGTGAATATGGAGTTGGCTAGGATTGAAGCTAGCTTTAGTGGGTTATCACCTGGGAAACATGGTTGGTCCATTAATGAATTTGGTGATTTAACAAAAGGTGCTGCTAGCACTGGAAAAGTATTTAATCCATCTACAGAAAGTGTAAACGAGCCGCTTGGTGACCTGGGAACATTGGATACTGATGAGAATGGCAATGCTTTCTTCTCTGGTGTCAAAGAGAAGCTGAGAGTTTCTGATCTTATTGGGAGGTCAATAGCAGTATATGGAACTGCTGACAAGTCAGATTCGGGTGTCGCAGCTGCTGTAATCGCTAGAAGCGCTGGAGTAGGTGAGAACTACAAGAAGCTTTGCACTTGTGATGGGACCACGATATGGGAATCAAGTGACAAAGACTTTGTCATGAGCAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006878 GO:0008047 GO:0008150 GO:0008270 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016530 GO:0016531 GO:0016532 GO:0019725 GO:0030003 GO:0030234 GO:0042592 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050790 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0065009 GO:0098771 GO:0098772 GO:0140104

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

HMA Sod_Cu

Protein Analysis

323

Amino Acids

34.03

Weight (kDa)

5.28

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	97 - 152	1.6e-11	Heavy-metal-associated domain
Sod_Cu	PF00080	179 - 281	3.9e-18	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12520 AT1G12520 AT1G12520
fragaria_vesca	FvH4_5g01090
malus_domestica	MD00G1069800.v1.1 MD04G1072900.v1.1
prunus_persica	Prupe.5G084900_v2.0.a1 Prupe.5G084900_v2.0.a1
pyrus_communis	pycom04g06600 pycom06g06690
rosa_chinensis	RchiOBHm_Chr7g0200231
rosa_laevigata	RLG00000003742
rosa_multiflora	Rmu_sc0019284.1_g000001 Rmu_sc0025955.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256210
rosa_rugosa	Rorug07G0058600
rosa_samantha	Rh7AG184100 Rh7BG186800 Rh7CG194500 Rh7DG188200
rosa_wichuraiana	Rw7G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	930
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	1 cut(s)	221
AciI	CCGC	5 cut(s)	57, 60, 371, 501, 710
AclWI	GGATC	2 cut(s)	472, 485
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	2 cut(s)	515, 635
AcuI	CTGAAG	2 cut(s)	437, 450
AfaI	GTAC	1 cut(s)	287
AfeI	AGCGCT	1 cut(s)	877
AfiI	CCNNNNNNNGG	1 cut(s)	930
AgsI	TTSAA	1 cut(s)	584
AhlI	ACTAGT	1 cut(s)	29
AjnI	CCWGG	2 cut(s)	607, 720
AjuI	GAANNNNNNNTTGG	2 cut(s)	554, 586
AlwI	GGATC	2 cut(s)	472, 485
AlwNI	CAGNNNCTG	1 cut(s)	860
Ama87I	CYCGRG	1 cut(s)	437
Aor51HI	AGCGCT	1 cut(s)	877
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	5 cut(s)	41, 503, 659, 854, 857
ApoI	RAATTY	2 cut(s)	515, 635
ArsI	GACNNNNNNTTYG	4 cut(s)	935, 939, 967, 971
AseI	ATTAAT	2 cut(s)	464, 630
AspLEI	GCGC	2 cut(s)	223, 878
AspS9I	GGNCC	4 cut(s)	373, 524, 624, 921
AsuHPI	GGTGA	6 cut(s)	181, 571, 597, 653, 728, 899
AsuNHI	GCTAGC	2 cut(s)	587, 662
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	4 cut(s)	373, 524, 624, 921
BalI	TGGCCA	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	477
BbsI	GAAGAC	1 cut(s)	425
BbvCI	CCTCAGC	1 cut(s)	202
BbvI	GCAGC	5 cut(s)	28, 490, 646, 844, 866
BccI	CCATC	3 cut(s)	344, 694, 911
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BciT130I	CCWGG	2 cut(s)	609, 722
BciVI	GTATCC	1 cut(s)	727
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	5 cut(s)	30, 576, 588, 663, 870
BfmI	CTRYAG	1 cut(s)	690
BfoI	RGCGCY	1 cut(s)	879
BfuI	GTATCC	1 cut(s)	727
BisI	GCNGC	7 cut(s)	42, 60, 504, 660, 710, 855, 858
BlsI	GCNGC	7 cut(s)	43, 61, 505, 661, 711, 856, 859
Bme1390I	CCNGG	2 cut(s)	609, 722
Bme18I	GGWCC	4 cut(s)	373, 524, 624, 921
BmeT110I	CYCGRG	1 cut(s)	437
BmgT120I	GGNCC	4 cut(s)	373, 524, 624, 921
BmiI	GGNNCC	2 cut(s)	479, 922
BmrFI	CCNGG	2 cut(s)	609, 722
BmsI	GCATC	1 cut(s)	247
BmtI	GCTAGC	2 cut(s)	591, 666
BpiI	GAAGAC	1 cut(s)	425
BpmI	CTGGAG	1 cut(s)	900
Bpu10I	CCTNAGC	2 cut(s)	202, 555
BsaJI	CCNNGG	2 cut(s)	608, 721
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	1 cut(s)	930
Bse1I	ACTGG	1 cut(s)	673
Bse3DI	GCAATG	2 cut(s)	63, 757
BseBI	CCWGG	2 cut(s)	609, 722
BseDI	CCNNGG	2 cut(s)	608, 721
BseLI	CCNNNNNNNGG	1 cut(s)	930
BseMI	GCAATG	2 cut(s)	63, 757
BseMII	CTCAG	4 cut(s)	216, 263, 569, 773
BseNI	ACTGG	1 cut(s)	673
BseRI	GAGGAG	5 cut(s)	127, 130, 133, 136, 235
BseXI	GCAGC	5 cut(s)	28, 490, 646, 844, 866
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	437
BslFI	GGGAC	1 cut(s)	934
BslI	CCNNNNNNNGG	1 cut(s)	930
BsmFI	GGGAC	1 cut(s)	934
BsnI	GGCC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	437
Bsp143I	GATC	2 cut(s)	477, 793
BspACI	CCGC	5 cut(s)	57, 60, 371, 501, 710
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	4 cut(s)	215, 262, 568, 774
BspFNI	CGCG	1 cut(s)	221
BspHI	TCATGA	1 cut(s)	957
BspLI	GGNNCC	2 cut(s)	479, 922
BspOI	GCTAGC	2 cut(s)	591, 666
BspPI	GGATC	2 cut(s)	472, 485
BsrDI	GCAATG	2 cut(s)	63, 757
BsrI	ACTGG	1 cut(s)	673
BssECI	CCNNGG	2 cut(s)	608, 721
BssMI	GATC	2 cut(s)	477, 793
Bst2UI	CCWGG	2 cut(s)	609, 722
BstC8I	GCNNGC	2 cut(s)	589, 664
BstDEI	CTNAG	5 cut(s)	11, 202, 249, 555, 782
BstEII	GGTNACC	1 cut(s)	716
BstFNI	CGCG	1 cut(s)	221
BstH2I	RGCGCY	1 cut(s)	879
BstHHI	GCGC	2 cut(s)	223, 878
BstKTI	GATC	2 cut(s)	480, 796
BstMBI	GATC	2 cut(s)	477, 793
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 65, 192, 509, 866, 875
BstNI	CCWGG	2 cut(s)	609, 722
BstPI	GGTNACC	1 cut(s)	716
BstSCI	CCNGG	2 cut(s)	607, 720
BstSFI	CTRYAG	1 cut(s)	690
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	5 cut(s)	28, 490, 646, 844, 866
BstV2I	GAAGAC	1 cut(s)	425
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
BsuI	GTATCC	1 cut(s)	727
BsuRI	GGCC	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	24, 666
Cac8I	GCNNGC	2 cut(s)	589, 664
CaiI	CAGNNNCTG	1 cut(s)	860
CciI	TCATGA	1 cut(s)	957
CfoI	GCGC	2 cut(s)	223, 878
Cfr13I	GGNCC	4 cut(s)	373, 524, 624, 921
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	6 cut(s)	214, 289, 298, 424, 617, 958
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	5 cut(s)	11, 202, 249, 555, 782
DpnI	GATC	2 cut(s)	479, 795
DpnII	GATC	2 cut(s)	477, 793
DraI	TTTAAA	1 cut(s)	520
EaeI	YGGCCR	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	386
Eco47I	GGWCC	4 cut(s)	373, 524, 624, 921
Eco47III	AGCGCT	1 cut(s)	877
Eco57I	CTGAAG	2 cut(s)	437, 450
Eco88I	CYCGRG	1 cut(s)	437
Eco91I	GGTNACC	1 cut(s)	716
EcoO65I	GGTNACC	1 cut(s)	716
EcoRII	CCWGG	2 cut(s)	607, 720
FaeI	CATG	6 cut(s)	217, 292, 301, 427, 620, 961
FaqI	GGGAC	1 cut(s)	934
FatI	CATG	6 cut(s)	213, 288, 297, 423, 616, 957
FauI	CCCGC	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	7 cut(s)	42, 60, 504, 660, 710, 855, 858
Fsp4HI	GCNGC	7 cut(s)	42, 60, 504, 660, 710, 855, 858
FspBI	CTAG	5 cut(s)	30, 576, 588, 663, 870
GlaI	GCGC	2 cut(s)	222, 877
GluI	GCNGC	7 cut(s)	42, 60, 504, 660, 710, 855, 858
GsuI	CTGGAG	1 cut(s)	900
HaeII	RGCGCY	1 cut(s)	879
HaeIII	GGCC	1 cut(s)	23
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	2 cut(s)	223, 878
Hin1II	CATG	6 cut(s)	217, 292, 301, 427, 620, 961
Hin6I	GCGC	2 cut(s)	221, 876
HinP1I	GCGC	2 cut(s)	221, 876
HindIII	AAGCTT	1 cut(s)	902
HinfI	GANTC	4 cut(s)	105, 397, 842, 935
HphI	GGTGA	6 cut(s)	181, 571, 597, 653, 728, 899
Hpy166II	GTNNAC	2 cut(s)	295, 703
Hpy188I	TCNGA	7 cut(s)	12, 104, 232, 252, 417, 793, 841
Hpy188III	TCNNGA	4 cut(s)	328, 437, 527, 958
Hpy8I	GTNNAC	2 cut(s)	295, 703
HpyCH4V	TGCA	2 cut(s)	407, 909
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 65, 192, 509, 866, 875
HpyF3I	CTNAG	5 cut(s)	11, 202, 249, 555, 782
Hsp92II	CATG	6 cut(s)	217, 292, 301, 427, 620, 961
HspAI	GCGC	2 cut(s)	221, 876
Kzo9I	GATC	2 cut(s)	477, 793
Lsp1109I	GCAGC	5 cut(s)	28, 490, 646, 844, 866
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	5 cut(s)	30, 576, 588, 663, 870
MaeIII	GTNAC	3 cut(s)	336, 716, 941
MalI	GATC	2 cut(s)	479, 795
MboI	GATC	2 cut(s)	477, 793
MboII	GAAGA	8 cut(s)	66, 69, 72, 75, 78, 430, 497, 751
MflI	RGATCY	1 cut(s)	477
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	3 cut(s)	465, 515, 635
MluNI	TGGCCA	1 cut(s)	23
Mox20I	TGGCCA	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	8 cut(s)	318, 357, 464, 519, 630, 647, 681, 970
Msp20I	TGGCCA	1 cut(s)	23
MspA1I	CMGCKG	2 cut(s)	503, 857
MspR9I	CCNGG	2 cut(s)	609, 722
MvaI	CCWGG	2 cut(s)	609, 722
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	6 cut(s)	41, 65, 192, 509, 866, 875
NdeII	GATC	2 cut(s)	477, 793
NheI	GCTAGC	2 cut(s)	587, 662
NlaIII	CATG	6 cut(s)	217, 292, 301, 427, 620, 961
NlaIV	GGNNCC	2 cut(s)	479, 922
NmuCI	GTSAC	2 cut(s)	716, 941
PaeR7I	CTCGAG	1 cut(s)	437
PagI	TCATGA	1 cut(s)	957
PfeI	GAWTC	4 cut(s)	105, 397, 842, 935
PflFI	GACNNNGTC	1 cut(s)	953
PflMI	CCANNNNNTGG	1 cut(s)	930
PkrI	GCNGC	7 cut(s)	43, 61, 505, 661, 711, 856, 859
PshBI	ATTAAT	2 cut(s)	464, 630
Psp6I	CCWGG	2 cut(s)	607, 720
PspEI	GGTNACC	1 cut(s)	716
PspGI	CCWGG	2 cut(s)	607, 720
PspN4I	GGNNCC	2 cut(s)	479, 922
PspPI	GGNCC	4 cut(s)	373, 524, 624, 921
PsrI	GAACNNNNNNTAC	2 cut(s)	718, 750
PstNI	CAGNNNCTG	1 cut(s)	860
PsuI	RGATCY	1 cut(s)	477
PsyI	GACNNNGTC	1 cut(s)	953
PvuII	CAGCTG	1 cut(s)	857
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SaqAI	TTAA	8 cut(s)	318, 357, 464, 519, 630, 647, 681, 970
SatI	GCNGC	7 cut(s)	42, 60, 504, 660, 710, 855, 858
Sau3AI	GATC	2 cut(s)	477, 793
Sau96I	GGNCC	4 cut(s)	373, 524, 624, 921
ScrFI	CCNGG	2 cut(s)	609, 722
SfaNI	GCATC	1 cut(s)	247
SfcI	CTRYAG	1 cut(s)	690
Sfr274I	CTCGAG	1 cut(s)	437
SinI	GGWCC	4 cut(s)	373, 524, 624, 921
SlaI	CTCGAG	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
SpeI	ACTAGT	1 cut(s)	29
Sse9I	AATT	3 cut(s)	465, 515, 635
SsiI	CCGC	5 cut(s)	57, 60, 371, 501, 710
SspMI	CTAG	5 cut(s)	30, 576, 588, 663, 870
StyD4I	CCNGG	2 cut(s)	607, 720
TaqI	TCGA	4 cut(s)	378, 438, 451, 547
TasI	AATT	3 cut(s)	465, 515, 635
TatI	WGTACW	1 cut(s)	285
TauI	GCSGC	2 cut(s)	62, 712
TfiI	GAWTC	4 cut(s)	105, 397, 842, 935
Tru1I	TTAA	8 cut(s)	318, 357, 464, 519, 630, 647, 681, 970
Tru9I	TTAA	8 cut(s)	318, 357, 464, 519, 630, 647, 681, 970
TscAI	CASTG	2 cut(s)	24, 673
TseFI	GTSAC	2 cut(s)	716, 941
TseI	GCWGC	5 cut(s)	41, 503, 659, 854, 857
Tsp45I	GTSAC	2 cut(s)	716, 941
TspDTI	ATGAA	2 cut(s)	314, 648
TspRI	CASTG	2 cut(s)	24, 673
Tth111I	GACNNNGTC	1 cut(s)	953
Van91I	CCANNNNNTGG	1 cut(s)	930
VpaK11BI	GGWCC	4 cut(s)	373, 524, 624, 921
VspI	ATTAAT	2 cut(s)	464, 630
XapI	RAATTY	2 cut(s)	515, 635
XhoI	CTCGAG	1 cut(s)	437
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	5 cut(s)	30, 576, 588, 663, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.