Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0010364

Physical Location & Seq

Genomic Coordinates Forward (+)

16340817 .. 16344356

Gene Structure 3540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG184100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCATTTCTGAGGTCAGTGGCCACCACTAGTGCCATAGCTGCCTCTCTATTACCCGCCGCCATTGCCCTTTCTTCTTCTTCTTCCTCCTCTCAATCTTTCCGATTCCCTAAATCCCAAAACATCTCCTTTCTCTCCTCCTCCTCCTCCTCCTCCCCCCCAAACCCAAAACCTCTGTTCCTCGCTACAAGCCTCACCAACTCTCCCTCAGCTCTCCACATGGACGCGCCCACATCGGAACAGAAGCCCTCCTTTCAGAGTGATGCTGTATTGCCAGAGCTACTGACAGAGTACATGGTAGACATGAAATGTGAGAGTTGTGTTAAGGCTGTCAAGAATAAGTTACAAGTTGTTGATGGGGTTAATAGTGTAGAGGCGGACCTCGACACCCAAGTTGTTAGGATTCTGGGTGCAACCCCTCTGAACACCATGACTGAAGCTCTCGAGCAGACAGGTCGAAAAGCGAGATTAATTGGACAGGGGATCCCAGAAGATTTCTTGGTTTCCGCTGCTGTCGCCGAATTTAAAGGTCCAGATGTTTTTGGTGTGGTTCGATTTGCTCAGGTGAATATGGAGTTGGCTAGGATTGAAGCTAACTTTAGTGGGTTATCACCTGGGAAACATGGTTGGTCCATTAATGAATTTGGTGATTTAACAAAAGGTGCTGCTAGCACTGGAAAAGTATTTAATCCATCTACTGAAAGTGTAAACGAGCCGCTTGGTGACCTGGGAACATTGGATACTGATGAGAATGGCAATGCCTTCTTCTCTGGTGTCAAAGAGAAGCTGAGAGTTTCTGATCTTATTGGGAGGTCAATAGCAGTATATGGAACTGCTGACAAGTCAGATTCAGGTGTCTCAGCTGCTGTAATCGCTAGAAGCGCTGGAGTAGGTGAGAACTACAAGAAGCTTTGCACTTGTGATGGGACCACGATATGGGAATCAAGTGACAAAGACTTTGTCATGAGCAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006878 GO:0008047 GO:0008150 GO:0008270 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016530 GO:0016531 GO:0016532 GO:0019725 GO:0030003 GO:0030234 GO:0042592 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050790 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0065009 GO:0098771 GO:0098772 GO:0140104

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

HMA Sod_Cu

Protein Analysis

325

Amino Acids

34.27

Weight (kDa)

5.06

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	99 - 154	1.6e-11	Heavy-metal-associated domain
Sod_Cu	PF00080	181 - 283	2.6e-18	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12520 AT1G12520 AT1G12520
fragaria_vesca	FvH4_5g01090
malus_domestica	MD00G1069800.v1.1 MD04G1072900.v1.1
prunus_persica	Prupe.5G084900_v2.0.a1 Prupe.5G084900_v2.0.a1
pyrus_communis	pycom04g06600 pycom06g06690
rosa_chinensis	RchiOBHm_Chr7g0200231
rosa_laevigata	RLG00000003742
rosa_multiflora	Rmu_sc0019284.1_g000001 Rmu_sc0025955.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256210
rosa_rugosa	Rorug07G0058600
rosa_samantha	Rh7AG184100 Rh7BG186800 Rh7CG194500 Rh7DG188200
rosa_wichuraiana	Rw7G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	936
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	1 cut(s)	227
AciI	CCGC	5 cut(s)	57, 60, 377, 507, 716
AclWI	GGATC	2 cut(s)	478, 491
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	2 cut(s)	521, 641
AcuI	CTGAAG	1 cut(s)	456
AfaI	GTAC	1 cut(s)	293
AfeI	AGCGCT	1 cut(s)	883
AfiI	CCNNNNNNNGG	1 cut(s)	936
AgsI	TTSAA	1 cut(s)	590
AhlI	ACTAGT	1 cut(s)	29
AjnI	CCWGG	2 cut(s)	613, 726
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AluBI	AGCT	8 cut(s)	41, 212, 280, 440, 593, 787, 863, 910
AluI	AGCT	8 cut(s)	41, 212, 280, 440, 593, 787, 863, 910
Alw26I	GTCTC	1 cut(s)	862
AlwI	GGATC	2 cut(s)	478, 491
AlwNI	CAGNNNCTG	1 cut(s)	866
Ama87I	CYCGRG	1 cut(s)	443
Aor51HI	AGCGCT	1 cut(s)	883
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	4 cut(s)	41, 509, 665, 863
ApoI	RAATTY	2 cut(s)	521, 641
ArsI	GACNNNNNNTTYG	4 cut(s)	941, 945, 973, 977
AseI	ATTAAT	2 cut(s)	470, 636
AspLEI	GCGC	2 cut(s)	229, 884
AspS9I	GGNCC	4 cut(s)	379, 530, 630, 927
AsuHPI	GGTGA	6 cut(s)	187, 577, 603, 659, 734, 905
AsuNHI	GCTAGC	1 cut(s)	668
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	4 cut(s)	379, 530, 630, 927
BalI	TGGCCA	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	483
BbvCI	CCTCAGC	1 cut(s)	208
BbvI	GCAGC	4 cut(s)	28, 496, 652, 850
BccI	CCATC	3 cut(s)	350, 700, 917
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciT130I	CCWGG	2 cut(s)	615, 728
BciVI	GTATCC	1 cut(s)	733
BcoDI	GTCTC	1 cut(s)	862
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	4 cut(s)	30, 582, 669, 876
BfoI	RGCGCY	1 cut(s)	885
BfuI	GTATCC	1 cut(s)	733
BisI	GCNGC	6 cut(s)	42, 60, 510, 666, 716, 864
BlsI	GCNGC	6 cut(s)	43, 61, 511, 667, 717, 865
Bme1390I	CCNGG	2 cut(s)	615, 728
Bme18I	GGWCC	4 cut(s)	379, 530, 630, 927
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	4 cut(s)	379, 530, 630, 927
BmiI	GGNNCC	2 cut(s)	485, 928
BmrFI	CCNGG	2 cut(s)	615, 728
BmsI	GCATC	1 cut(s)	253
BmtI	GCTAGC	1 cut(s)	672
BpmI	CTGGAG	1 cut(s)	906
Bpu10I	CCTNAGC	2 cut(s)	208, 561
BsaJI	CCNNGG	2 cut(s)	614, 727
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bsc4I	CCNNNNNNNGG	1 cut(s)	936
Bse1I	ACTGG	1 cut(s)	679
Bse3DI	GCAATG	2 cut(s)	63, 763
BseBI	CCWGG	2 cut(s)	615, 728
BseDI	CCNNGG	2 cut(s)	614, 727
BseLI	CCNNNNNNNGG	1 cut(s)	936
BseMI	GCAATG	2 cut(s)	63, 763
BseMII	CTCAG	4 cut(s)	222, 575, 779, 873
BseNI	ACTGG	1 cut(s)	679
BseRI	GAGGAG	7 cut(s)	79, 127, 130, 133, 136, 139, 142
BseXI	GCAGC	4 cut(s)	28, 496, 652, 850
Bsh1236I	CGCG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	443
BslFI	GGGAC	1 cut(s)	940
BslI	CCNNNNNNNGG	1 cut(s)	936
BsmAI	GTCTC	1 cut(s)	862
BsmFI	GGGAC	1 cut(s)	940
BsnI	GGCC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	443
Bsp143I	GATC	2 cut(s)	483, 799
BspACI	CCGC	5 cut(s)	57, 60, 377, 507, 716
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	4 cut(s)	221, 574, 780, 872
BspFNI	CGCG	1 cut(s)	227
BspHI	TCATGA	1 cut(s)	963
BspLI	GGNNCC	2 cut(s)	485, 928
BspOI	GCTAGC	1 cut(s)	672
BspPI	GGATC	2 cut(s)	478, 491
BsrDI	GCAATG	2 cut(s)	63, 763
BsrI	ACTGG	1 cut(s)	679
BssECI	CCNNGG	2 cut(s)	614, 727
BssMI	GATC	2 cut(s)	483, 799
Bst2UI	CCWGG	2 cut(s)	615, 728
BstC8I	GCNNGC	1 cut(s)	670
BstDEI	CTNAG	5 cut(s)	11, 208, 561, 788, 859
BstEII	GGTNACC	1 cut(s)	722
BstFNI	CGCG	1 cut(s)	227
BstH2I	RGCGCY	1 cut(s)	885
BstHHI	GCGC	2 cut(s)	229, 884
BstKTI	GATC	2 cut(s)	486, 802
BstMAI	GTCTC	1 cut(s)	862
BstMBI	GATC	2 cut(s)	483, 799
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 65, 515, 872, 881
BstNI	CCWGG	2 cut(s)	615, 728
BstPI	GGTNACC	1 cut(s)	722
BstSCI	CCNGG	2 cut(s)	613, 726
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	4 cut(s)	28, 496, 652, 850
BstX2I	RGATCY	1 cut(s)	483
BstYI	RGATCY	1 cut(s)	483
BsuI	GTATCC	1 cut(s)	733
BsuRI	GGCC	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	24, 672
Cac8I	GCNNGC	1 cut(s)	670
CaiI	CAGNNNCTG	1 cut(s)	866
CciI	TCATGA	1 cut(s)	963
CfoI	GCGC	2 cut(s)	229, 884
Cfr13I	GGNCC	4 cut(s)	379, 530, 630, 927
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	6 cut(s)	220, 295, 304, 430, 623, 964
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	5 cut(s)	11, 208, 561, 788, 859
DpnI	GATC	2 cut(s)	485, 801
DpnII	GATC	2 cut(s)	483, 799
DraI	TTTAAA	1 cut(s)	526
EaeI	YGGCCR	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	392
Eco47I	GGWCC	4 cut(s)	379, 530, 630, 927
Eco47III	AGCGCT	1 cut(s)	883
Eco57I	CTGAAG	1 cut(s)	456
Eco88I	CYCGRG	1 cut(s)	443
Eco91I	GGTNACC	1 cut(s)	722
EcoO65I	GGTNACC	1 cut(s)	722
EcoRII	CCWGG	2 cut(s)	613, 726
FaeI	CATG	6 cut(s)	223, 298, 307, 433, 626, 967
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	1 cut(s)	940
FatI	CATG	6 cut(s)	219, 294, 303, 429, 622, 963
FauI	CCCGC	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	6 cut(s)	42, 60, 510, 666, 716, 864
Fsp4HI	GCNGC	6 cut(s)	42, 60, 510, 666, 716, 864
FspBI	CTAG	4 cut(s)	30, 582, 669, 876
GlaI	GCGC	2 cut(s)	228, 883
GluI	GCNGC	6 cut(s)	42, 60, 510, 666, 716, 864
GsuI	CTGGAG	1 cut(s)	906
HaeII	RGCGCY	1 cut(s)	885
HaeIII	GGCC	1 cut(s)	23
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	2 cut(s)	229, 884
Hin1II	CATG	6 cut(s)	223, 298, 307, 433, 626, 967
Hin6I	GCGC	2 cut(s)	227, 882
HinP1I	GCGC	2 cut(s)	227, 882
HindIII	AAGCTT	1 cut(s)	908
HinfI	GANTC	4 cut(s)	105, 403, 848, 941
HphI	GGTGA	6 cut(s)	187, 577, 603, 659, 734, 905
Hpy166II	GTNNAC	2 cut(s)	301, 709
Hpy188I	TCNGA	7 cut(s)	12, 104, 238, 258, 423, 799, 847
Hpy188III	TCNNGA	4 cut(s)	334, 443, 533, 964
Hpy8I	GTNNAC	2 cut(s)	301, 709
HpyAV	CCTTC	1 cut(s)	772
HpyCH4V	TGCA	2 cut(s)	413, 915
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 65, 515, 872, 881
HpyF3I	CTNAG	5 cut(s)	11, 208, 561, 788, 859
Hsp92II	CATG	6 cut(s)	223, 298, 307, 433, 626, 967
HspAI	GCGC	2 cut(s)	227, 882
Kzo9I	GATC	2 cut(s)	483, 799
Lsp1109I	GCAGC	4 cut(s)	28, 496, 652, 850
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	4 cut(s)	30, 582, 669, 876
MaeIII	GTNAC	3 cut(s)	342, 722, 947
MalI	GATC	2 cut(s)	485, 801
MboI	GATC	2 cut(s)	483, 799
MboII	GAAGA	6 cut(s)	66, 69, 72, 75, 503, 757
MflI	RGATCY	1 cut(s)	483
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	3 cut(s)	471, 521, 641
MluNI	TGGCCA	1 cut(s)	23
Mox20I	TGGCCA	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	8 cut(s)	324, 363, 470, 525, 636, 653, 687, 976
Msp20I	TGGCCA	1 cut(s)	23
MspA1I	CMGCKG	2 cut(s)	509, 863
MspR9I	CCNGG	2 cut(s)	615, 728
MvaI	CCWGG	2 cut(s)	615, 728
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	5 cut(s)	41, 65, 515, 872, 881
NdeII	GATC	2 cut(s)	483, 799
NheI	GCTAGC	1 cut(s)	668
NlaIII	CATG	6 cut(s)	223, 298, 307, 433, 626, 967
NlaIV	GGNNCC	2 cut(s)	485, 928
NmuCI	GTSAC	2 cut(s)	722, 947
PaeR7I	CTCGAG	1 cut(s)	443
PagI	TCATGA	1 cut(s)	963
PfeI	GAWTC	4 cut(s)	105, 403, 848, 941
PflFI	GACNNNGTC	1 cut(s)	959
PflMI	CCANNNNNTGG	1 cut(s)	936
PkrI	GCNGC	6 cut(s)	43, 61, 511, 667, 717, 865
PshBI	ATTAAT	2 cut(s)	470, 636
Psp6I	CCWGG	2 cut(s)	613, 726
PspEI	GGTNACC	1 cut(s)	722
PspGI	CCWGG	2 cut(s)	613, 726
PspN4I	GGNNCC	2 cut(s)	485, 928
PspPI	GGNCC	4 cut(s)	379, 530, 630, 927
PsrI	GAACNNNNNNTAC	2 cut(s)	724, 756
PstNI	CAGNNNCTG	1 cut(s)	866
PsuI	RGATCY	1 cut(s)	483
PsyI	GACNNNGTC	1 cut(s)	959
PvuII	CAGCTG	1 cut(s)	863
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SaqAI	TTAA	8 cut(s)	324, 363, 470, 525, 636, 653, 687, 976
SatI	GCNGC	6 cut(s)	42, 60, 510, 666, 716, 864
Sau3AI	GATC	2 cut(s)	483, 799
Sau96I	GGNCC	4 cut(s)	379, 530, 630, 927
ScrFI	CCNGG	2 cut(s)	615, 728
SfaNI	GCATC	1 cut(s)	253
Sfr274I	CTCGAG	1 cut(s)	443
SinI	GGWCC	4 cut(s)	379, 530, 630, 927
SlaI	CTCGAG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SpeI	ACTAGT	1 cut(s)	29
Sse9I	AATT	3 cut(s)	471, 521, 641
SsiI	CCGC	5 cut(s)	57, 60, 377, 507, 716
SspMI	CTAG	4 cut(s)	30, 582, 669, 876
StyD4I	CCNGG	2 cut(s)	613, 726
TaqI	TCGA	4 cut(s)	384, 444, 457, 553
TasI	AATT	3 cut(s)	471, 521, 641
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	2 cut(s)	62, 718
TfiI	GAWTC	4 cut(s)	105, 403, 848, 941
Tru1I	TTAA	8 cut(s)	324, 363, 470, 525, 636, 653, 687, 976
Tru9I	TTAA	8 cut(s)	324, 363, 470, 525, 636, 653, 687, 976
TscAI	CASTG	2 cut(s)	24, 679
TseFI	GTSAC	2 cut(s)	722, 947
TseI	GCWGC	4 cut(s)	41, 509, 665, 863
Tsp45I	GTSAC	2 cut(s)	722, 947
TspDTI	ATGAA	2 cut(s)	320, 654
TspRI	CASTG	2 cut(s)	24, 679
Tth111I	GACNNNGTC	1 cut(s)	959
Van91I	CCANNNNNTGG	1 cut(s)	936
VpaK11BI	GGWCC	4 cut(s)	379, 530, 630, 927
VspI	ATTAAT	2 cut(s)	470, 636
XapI	RAATTY	2 cut(s)	521, 641
XhoI	CTCGAG	1 cut(s)	443
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	4 cut(s)	30, 582, 669, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.