Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010364

Physical Location & Seq

Genomic Coordinates Reverse (-)

671513 .. 674272

Gene Structure 2760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCATTTCTGAGATCAGTGGCCACCACTACTGCCATAGCTGCCTCTCTTTTACCCGCCGCCATTTCCTTTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCATCTCAATCTTTCCGATTCCCTAAACCCCAACACCTCTCCTTCTCCTCCTCTCCAAACCCAAATCCTCTGTTCCTCTCCACAAGCCTCACCAACTCCCCCTCAGCTCTCCACATGGACGCACCCACATCCGAACAGAAGCCCTCCTTTCAGGGTGATGCTGTATTGCCAGAGCTCCTGACAGAGTACATGGTAGATATGAAATGTGAGGGTTGTGTTAAGGCTGTCAAGAATAAGTTACAAGGTGTTGAGGGGGTTAAAAGTGTAGAAGTGGACCTAGATACCCAAGTTGTTAGGATTCTGGGTGCAACCCCTCTGAAGACCATGACTGAAGCTCTTGAGCAGACTGGTCGAAAAGCAAGATTAATTGGGCAGGGGATCCCAGAAGATTTCTTGGTTTCTGCTGCTGTCGCTGAATTTAAAGGTCCAGATGTTTTTGGTGTGGTTCGTTTTGCTCAGGTGAATATGGAGTTGGCTAGGATTGAAGCAAACTTTAGTGGGTTATCACCTGGCAAACATGGTTGGTCCATCAATGAATTTGGTGATCTAACAAAAGGTGCTGCTAGCACTGGAAAAGTATTCGATCCATCAACTGAAGGAGTAAACGAGCCGCTTGGCGACCTGGGAACATTGGATACTGATGAGAATCGCAATGCCTTCTTCACTGGAGTCAAAGAGAAGCTGAGAGTTCCGGAACTCATTGGGCGGTCAATAGCAGTATACGGAACTGCTGATAAGTCGGATTCTGGTGTCGCTGCTGCTGTTATTGCTAGAAGCGCAGGAGTAGGTGAGAACTACAAGAAGCTTTGCACTTGTGATGGGACGACGATATGGGAATCAAGTGACAAAGACTTTGTCATGAGCAAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006878 GO:0008047 GO:0008150 GO:0008270 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016530 GO:0016531 GO:0016532 GO:0019725 GO:0030003 GO:0030234 GO:0042592 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050790 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0065009 GO:0098771 GO:0098772 GO:0140104

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

HMA Sod_Cu

Protein Analysis

326

Amino Acids

34.37

Weight (kDa)

5.28

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	99 - 154	2.9e-13	Heavy-metal-associated domain
Sod_Cu	PF00080	181 - 283	3.8e-16	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12520 AT1G12520 AT1G12520
fragaria_vesca	FvH4_5g01090
malus_domestica	MD00G1069800.v1.1 MD04G1072900.v1.1
prunus_persica	Prupe.5G084900_v2.0.a1 Prupe.5G084900_v2.0.a1
pyrus_communis	pycom04g06600 pycom06g06690
rosa_chinensis	RchiOBHm_Chr7g0200231
rosa_laevigata	RLG00000003742
rosa_multiflora	Rmu_sc0019284.1_g000001 Rmu_sc0025955.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256210
rosa_rugosa	Rorug07G0058600
rosa_samantha	Rh7AG184100 Rh7BG186800 Rh7CG194500 Rh7DG188200
rosa_wichuraiana	Rw7G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	825
AccIII	TCCGGA	1 cut(s)	796
AciI	CCGC	4 cut(s)	57, 60, 716, 811
AclWI	GGATC	3 cut(s)	478, 491, 683
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	2 cut(s)	521, 641
AcuI	CTGAAG	3 cut(s)	443, 456, 720
AfaI	GTAC	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	590
AjnI	CCWGG	2 cut(s)	613, 726
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AluBI	AGCT	6 cut(s)	41, 212, 280, 440, 787, 910
AluI	AGCT	6 cut(s)	41, 212, 280, 440, 787, 910
Alw21I	GWGCWC	1 cut(s)	282
AlwI	GGATC	3 cut(s)	478, 491, 683
Aor13HI	TCCGGA	1 cut(s)	796
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	5 cut(s)	41, 509, 665, 860, 863
ApoI	RAATTY	2 cut(s)	521, 641
ArsI	GACNNNNNNTTYG	4 cut(s)	941, 945, 973, 977
AseI	ATTAAT	1 cut(s)	470
AspLEI	GCGC	1 cut(s)	884
AspS9I	GGNCC	3 cut(s)	379, 530, 630
AsuHPI	GGTGA	6 cut(s)	187, 272, 577, 603, 659, 905
AsuNHI	GCTAGC	1 cut(s)	668
AvaII	GGWCC	3 cut(s)	379, 530, 630
BaeI	ACNNNNGTAYC	2 cut(s)	378, 411
BalI	TGGCCA	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	483
BanII	GRGCYC	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	282
BbvCI	CCTCAGC	1 cut(s)	208
BbvI	GCAGC	5 cut(s)	28, 496, 652, 847, 850
BccI	CCATC	3 cut(s)	641, 700, 917
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciT130I	CCWGG	2 cut(s)	615, 728
BciVI	GTATCC	1 cut(s)	733
BfaI	CTAG	4 cut(s)	383, 582, 669, 876
BfuI	GTATCC	1 cut(s)	733
BisI	GCNGC	7 cut(s)	42, 60, 510, 666, 716, 861, 864
BlsI	GCNGC	7 cut(s)	43, 61, 511, 667, 717, 862, 865
Bme1390I	CCNGG	2 cut(s)	615, 728
Bme18I	GGWCC	3 cut(s)	379, 530, 630
BmgT120I	GGNCC	3 cut(s)	379, 530, 630
BmiI	GGNNCC	1 cut(s)	485
BmrFI	CCNGG	2 cut(s)	615, 728
BmsI	GCATC	1 cut(s)	253
BmtI	GCTAGC	1 cut(s)	672
BpiI	GAAGAC	1 cut(s)	431
BpmI	CTGGAG	1 cut(s)	792
Bpu10I	CCTNAGC	2 cut(s)	208, 561
BpuEI	CTTGAG	1 cut(s)	464
BsaBI	GATNNNNATC	1 cut(s)	750
BsaJI	CCNNGG	1 cut(s)	727
BsaWI	WCCGGW	1 cut(s)	796
Bse1I	ACTGG	3 cut(s)	457, 679, 775
Bse3DI	GCAATG	1 cut(s)	763
Bse8I	GATNNNNATC	1 cut(s)	750
BseAI	TCCGGA	1 cut(s)	796
BseBI	CCWGG	2 cut(s)	615, 728
BseDI	CCNNGG	1 cut(s)	727
BseGI	GGATG	1 cut(s)	233
BseJI	GATNNNNATC	1 cut(s)	750
BseMI	GCAATG	1 cut(s)	763
BseMII	CTCAG	3 cut(s)	222, 575, 779
BseNI	ACTGG	3 cut(s)	457, 679, 775
BseRI	GAGGAG	2 cut(s)	142, 145
BseXI	GCAGC	5 cut(s)	28, 496, 652, 847, 850
BshFI	GGCC	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	797
BslFI	GGGAC	1 cut(s)	940
BsmFI	GGGAC	1 cut(s)	940
BsnI	GGCC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp13I	TCCGGA	1 cut(s)	796
Bsp143I	GATC	4 cut(s)	14, 483, 649, 688
BspACI	CCGC	4 cut(s)	57, 60, 716, 811
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	3 cut(s)	221, 574, 780
BspEI	TCCGGA	1 cut(s)	796
BspHI	TCATGA	1 cut(s)	963
BspLI	GGNNCC	1 cut(s)	485
BspOI	GCTAGC	1 cut(s)	672
BspPI	GGATC	3 cut(s)	478, 491, 683
BsrDI	GCAATG	1 cut(s)	763
BsrI	ACTGG	3 cut(s)	457, 679, 775
BssECI	CCNNGG	1 cut(s)	727
BssMI	GATC	4 cut(s)	14, 483, 649, 688
BssNAI	GTATAC	1 cut(s)	826
Bst1107I	GTATAC	1 cut(s)	826
Bst2UI	CCWGG	2 cut(s)	615, 728
BstC8I	GCNNGC	1 cut(s)	670
BstDEI	CTNAG	4 cut(s)	11, 208, 561, 788
BstF5I	GGATG	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	884
BstKTI	GATC	4 cut(s)	17, 486, 652, 691
BstMBI	GATC	4 cut(s)	14, 483, 649, 688
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 515, 872, 881
BstNI	CCWGG	2 cut(s)	615, 728
BstSCI	CCNGG	2 cut(s)	613, 726
BstV1I	GCAGC	5 cut(s)	28, 496, 652, 847, 850
BstV2I	GAAGAC	1 cut(s)	431
BstX2I	RGATCY	1 cut(s)	483
BstYI	RGATCY	1 cut(s)	483
BstZ17I	GTATAC	1 cut(s)	826
BsuI	GTATCC	1 cut(s)	733
BsuRI	GGCC	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	233
BtsIMutI	CAGTG	3 cut(s)	24, 672, 768
Cac8I	GCNNGC	1 cut(s)	670
CciI	TCATGA	1 cut(s)	963
CfoI	GCGC	1 cut(s)	884
Cfr13I	GGNCC	3 cut(s)	379, 530, 630
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	5 cut(s)	220, 295, 430, 623, 964
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	4 cut(s)	11, 208, 561, 788
DpnI	GATC	4 cut(s)	16, 485, 651, 690
DpnII	GATC	4 cut(s)	14, 483, 649, 688
DraI	TTTAAA	1 cut(s)	526
EaeI	YGGCCR	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	282
Eco47I	GGWCC	3 cut(s)	379, 530, 630
Eco53kI	GAGCTC	1 cut(s)	280
Eco57I	CTGAAG	3 cut(s)	443, 456, 720
EcoICRI	GAGCTC	1 cut(s)	280
EcoRII	CCWGG	2 cut(s)	613, 726
EcoT38I	GRGCYC	1 cut(s)	282
FaeI	CATG	5 cut(s)	223, 298, 433, 626, 967
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	1 cut(s)	940
FatI	CATG	5 cut(s)	219, 294, 429, 622, 963
FauI	CCCGC	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	825
Fnu4HI	GCNGC	7 cut(s)	42, 60, 510, 666, 716, 861, 864
FokI	GGATG	1 cut(s)	220
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	7 cut(s)	42, 60, 510, 666, 716, 861, 864
FspBI	CTAG	4 cut(s)	383, 582, 669, 876
GlaI	GCGC	1 cut(s)	883
GluI	GCNGC	7 cut(s)	42, 60, 510, 666, 716, 861, 864
GsuI	CTGGAG	1 cut(s)	792
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	1 cut(s)	797
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	1 cut(s)	884
Hin1II	CATG	5 cut(s)	223, 298, 433, 626, 967
Hin6I	GCGC	1 cut(s)	882
HinP1I	GCGC	1 cut(s)	882
HindIII	AAGCTT	1 cut(s)	908
HinfI	GANTC	6 cut(s)	123, 403, 751, 774, 848, 941
HpaII	CCGG	1 cut(s)	797
HphI	GGTGA	6 cut(s)	187, 272, 577, 603, 659, 905
Hpy166II	GTNNAC	3 cut(s)	379, 709, 826
Hpy188I	TCNGA	5 cut(s)	12, 122, 238, 423, 847
Hpy188III	TCNNGA	6 cut(s)	283, 334, 443, 533, 797, 964
Hpy8I	GTNNAC	3 cut(s)	379, 709, 826
Hpy99I	CGWCG	1 cut(s)	934
HpyAV	CCTTC	3 cut(s)	157, 695, 772
HpyCH4V	TGCA	2 cut(s)	413, 915
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 515, 872, 881
HpyF3I	CTNAG	4 cut(s)	11, 208, 561, 788
Hsp92II	CATG	5 cut(s)	223, 298, 433, 626, 967
HspAI	GCGC	1 cut(s)	882
Kpn2I	TCCGGA	1 cut(s)	796
Kzo9I	GATC	4 cut(s)	14, 483, 649, 688
LmnI	GCTCC	1 cut(s)	285
Lsp1109I	GCAGC	5 cut(s)	28, 496, 652, 847, 850
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	4 cut(s)	383, 582, 669, 876
MaeIII	GTNAC	2 cut(s)	342, 947
MalI	GATC	4 cut(s)	16, 485, 651, 690
MboI	GATC	4 cut(s)	14, 483, 649, 688
MflI	RGATCY	1 cut(s)	483
MhlI	GDGCHC	1 cut(s)	282
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	3 cut(s)	471, 521, 641
MluNI	TGGCCA	1 cut(s)	23
MlyI	GAGTC	1 cut(s)	783
MmeI	TCCRAC	1 cut(s)	825
Mox20I	TGGCCA	1 cut(s)	23
MroI	TCCGGA	1 cut(s)	796
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	4 cut(s)	324, 363, 470, 525
Msp20I	TGGCCA	1 cut(s)	23
MspI	CCGG	1 cut(s)	797
MspR9I	CCNGG	2 cut(s)	615, 728
MvaI	CCWGG	2 cut(s)	615, 728
MwoI	GCNNNNNNNGC	4 cut(s)	41, 515, 872, 881
NdeII	GATC	4 cut(s)	14, 483, 649, 688
NheI	GCTAGC	1 cut(s)	668
NlaIII	CATG	5 cut(s)	223, 298, 433, 626, 967
NlaIV	GGNNCC	1 cut(s)	485
NmuCI	GTSAC	1 cut(s)	947
PagI	TCATGA	1 cut(s)	963
PfeI	GAWTC	5 cut(s)	123, 403, 751, 848, 941
PflFI	GACNNNGTC	1 cut(s)	959
PkrI	GCNGC	7 cut(s)	43, 61, 511, 667, 717, 862, 865
PleI	GAGTC	1 cut(s)	782
PpsI	GAGTC	1 cut(s)	782
PshBI	ATTAAT	1 cut(s)	470
Psp124BI	GAGCTC	1 cut(s)	282
Psp6I	CCWGG	2 cut(s)	613, 726
PspGI	CCWGG	2 cut(s)	613, 726
PspN4I	GGNNCC	1 cut(s)	485
PspPI	GGNCC	3 cut(s)	379, 530, 630
PsrI	GAACNNNNNNTAC	2 cut(s)	724, 756
PsuI	RGATCY	1 cut(s)	483
PsyI	GACNNNGTC	1 cut(s)	959
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SacI	GAGCTC	1 cut(s)	282
SaqAI	TTAA	4 cut(s)	324, 363, 470, 525
SatI	GCNGC	7 cut(s)	42, 60, 510, 666, 716, 861, 864
Sau3AI	GATC	4 cut(s)	14, 483, 649, 688
Sau96I	GGNCC	3 cut(s)	379, 530, 630
SchI	GAGTC	1 cut(s)	783
ScrFI	CCNGG	2 cut(s)	615, 728
SduI	GDGCHC	1 cut(s)	282
SfaNI	GCATC	1 cut(s)	253
SinI	GGWCC	3 cut(s)	379, 530, 630
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	3 cut(s)	471, 521, 641
SsiI	CCGC	4 cut(s)	57, 60, 716, 811
SspMI	CTAG	4 cut(s)	383, 582, 669, 876
SstI	GAGCTC	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	613, 726
TaqI	TCGA	2 cut(s)	457, 687
TasI	AATT	3 cut(s)	471, 521, 641
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	2 cut(s)	62, 718
TfiI	GAWTC	5 cut(s)	123, 403, 751, 848, 941
Tru1I	TTAA	4 cut(s)	324, 363, 470, 525
Tru9I	TTAA	4 cut(s)	324, 363, 470, 525
TscAI	CASTG	3 cut(s)	24, 679, 775
TseFI	GTSAC	1 cut(s)	947
TseI	GCWGC	5 cut(s)	41, 509, 665, 860, 863
Tsp45I	GTSAC	1 cut(s)	947
TspDTI	ATGAA	2 cut(s)	320, 654
TspGWI	ACGGA	1 cut(s)	843
TspRI	CASTG	3 cut(s)	24, 679, 775
Tth111I	GACNNNGTC	1 cut(s)	959
VpaK11BI	GGWCC	3 cut(s)	379, 530, 630
VspI	ATTAAT	1 cut(s)	470
XapI	RAATTY	2 cut(s)	521, 641
XmiI	GTMKAC	1 cut(s)	825
XspI	CTAG	4 cut(s)	383, 582, 669, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.