Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010364

Physical Location & Seq

Genomic Coordinates Forward (+)

17410472 .. 17423706

Gene Structure 13235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG188200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCAAATGAAACAGAACAGCTGCAAAATTATTGGTCTGGGTGCTTGTCTATATGGTGGGCAGGATTTGGTGCAAGACAATTTCTTGGTTTCCGCTGCTGTCGCTGAATTTAAAGGTCCAGATGTTTTTGGTGTGGTTCGATTTGCTCAGGTGAATATGGAGTTGGCTAGGATTGAAGCTAGCTTTAGTGGGTTATCACCTGGGAAACATGGTTGGTCCATTAATGAATTTGGTGATTTAACAAAAGGTGCTGCTAGCACTGGAAAAGTATTTAATCCATCTACAGAAAGTGTAAACGAGCCGCTTGGTGACCTGGGAACATTGGATACTGATGAGAATGGCAATGCTTTCTTCTCTGGTGTCAAAGAGAAGCTGAGAGTTTCTGATCTTATTGGGAGGTCAATAGCAGTATATGGAACTGCTGACAAGTCAGATTCGGGTGTCGCAGCTGCTGTAATCGCTAGAAGCGCTGGAGTAGGTGAGAACTACAAGAAGCTTTGCACTTGTGATGGGACCACGATATGGGAATCAAGTGACAAAGACTTTGTCATGAGCAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006878 GO:0008047 GO:0008150 GO:0008270 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016530 GO:0016531 GO:0016532 GO:0019725 GO:0030003 GO:0030234 GO:0042592 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050790 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0065009 GO:0098771 GO:0098772 GO:0140104

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

HMA Sod_Cu

Protein Analysis

187

Amino Acids

19.72

Weight (kDa)

4.92

Isoelectric Point (pI)

25.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Cu	PF00080	43 - 145	1e-18	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12520 AT1G12520 AT1G12520
fragaria_vesca	FvH4_5g01090
malus_domestica	MD00G1069800.v1.1 MD04G1072900.v1.1
prunus_persica	Prupe.5G084900_v2.0.a1 Prupe.5G084900_v2.0.a1
pyrus_communis	pycom04g06600 pycom06g06690
rosa_chinensis	RchiOBHm_Chr7g0200231
rosa_laevigata	RLG00000003742
rosa_multiflora	Rmu_sc0019284.1_g000001 Rmu_sc0025955.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256210
rosa_rugosa	Rorug07G0058600
rosa_samantha	Rh7AG184100 Rh7BG186800 Rh7CG194500 Rh7DG188200
rosa_wichuraiana	Rw7G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	522
AciI	CCGC	2 cut(s)	93, 302
AcsI	RAATTY	2 cut(s)	107, 227
AfeI	AGCGCT	1 cut(s)	469
AfiI	CCNNNNNNNGG	1 cut(s)	522
AgsI	TTSAA	1 cut(s)	176
AjnI	CCWGG	2 cut(s)	199, 312
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AluBI	AGCT	6 cut(s)	21, 179, 183, 373, 449, 496
AluI	AGCT	6 cut(s)	21, 179, 183, 373, 449, 496
AlwNI	CAGNNNCTG	1 cut(s)	452
Aor51HI	AGCGCT	1 cut(s)	469
ApeKI	GCWGC	5 cut(s)	21, 95, 251, 446, 449
ApoI	RAATTY	2 cut(s)	107, 227
ArsI	GACNNNNNNTTYG	4 cut(s)	527, 531, 559, 563
AseI	ATTAAT	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	470
AspS9I	GGNCC	3 cut(s)	116, 216, 513
AsuHPI	GGTGA	5 cut(s)	163, 189, 245, 320, 491
AsuNHI	GCTAGC	2 cut(s)	179, 254
AvaII	GGWCC	3 cut(s)	116, 216, 513
BbvI	GCAGC	5 cut(s)	8, 82, 238, 436, 458
BccI	CCATC	2 cut(s)	286, 503
BciT130I	CCWGG	2 cut(s)	201, 314
BciVI	GTATCC	1 cut(s)	319
BfaI	CTAG	4 cut(s)	168, 180, 255, 462
BfmI	CTRYAG	1 cut(s)	282
BfoI	RGCGCY	1 cut(s)	471
BfuI	GTATCC	1 cut(s)	319
BisI	GCNGC	6 cut(s)	22, 96, 252, 302, 447, 450
BlsI	GCNGC	6 cut(s)	23, 97, 253, 303, 448, 451
Bme1390I	CCNGG	2 cut(s)	201, 314
Bme18I	GGWCC	3 cut(s)	116, 216, 513
BmgT120I	GGNCC	3 cut(s)	116, 216, 513
BmiI	GGNNCC	1 cut(s)	514
BmrFI	CCNGG	2 cut(s)	201, 314
BmtI	GCTAGC	2 cut(s)	183, 258
BpmI	CTGGAG	1 cut(s)	492
Bpu10I	CCTNAGC	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	200, 313
Bsc4I	CCNNNNNNNGG	1 cut(s)	522
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	1 cut(s)	349
BseBI	CCWGG	2 cut(s)	201, 314
BseDI	CCNNGG	2 cut(s)	200, 313
BseLI	CCNNNNNNNGG	1 cut(s)	522
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	2 cut(s)	161, 365
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	5 cut(s)	8, 82, 238, 436, 458
BslFI	GGGAC	1 cut(s)	526
BslI	CCNNNNNNNGG	1 cut(s)	522
BsmFI	GGGAC	1 cut(s)	526
Bsp143I	GATC	1 cut(s)	385
BspACI	CCGC	2 cut(s)	93, 302
BspCNI	CTCAG	2 cut(s)	160, 366
BspHI	TCATGA	1 cut(s)	549
BspLI	GGNNCC	1 cut(s)	514
BspOI	GCTAGC	2 cut(s)	183, 258
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	2 cut(s)	200, 313
BssMI	GATC	1 cut(s)	385
Bst2UI	CCWGG	2 cut(s)	201, 314
BstC8I	GCNNGC	2 cut(s)	181, 256
BstDEI	CTNAG	2 cut(s)	147, 374
BstEII	GGTNACC	1 cut(s)	308
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	470
BstKTI	GATC	1 cut(s)	388
BstMBI	GATC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 458, 467
BstNI	CCWGG	2 cut(s)	201, 314
BstPI	GGTNACC	1 cut(s)	308
BstSCI	CCNGG	2 cut(s)	199, 312
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	5 cut(s)	8, 82, 238, 436, 458
BsuI	GTATCC	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	2 cut(s)	181, 256
CaiI	CAGNNNCTG	1 cut(s)	452
CciI	TCATGA	1 cut(s)	549
CfoI	GCGC	1 cut(s)	470
Cfr13I	GGNCC	3 cut(s)	116, 216, 513
CviAII	CATG	2 cut(s)	209, 550
CviJI	RGCY	8 cut(s)	21, 167, 179, 183, 301, 373, 449, 496
CviKI_1	RGCY	8 cut(s)	21, 167, 179, 183, 301, 373, 449, 496
DdeI	CTNAG	2 cut(s)	147, 374
DpnI	GATC	1 cut(s)	387
DpnII	GATC	1 cut(s)	385
DraI	TTTAAA	1 cut(s)	112
Eco47I	GGWCC	3 cut(s)	116, 216, 513
Eco47III	AGCGCT	1 cut(s)	469
Eco91I	GGTNACC	1 cut(s)	308
EcoO65I	GGTNACC	1 cut(s)	308
EcoRII	CCWGG	2 cut(s)	199, 312
FaeI	CATG	2 cut(s)	212, 553
FaiI	YATR	8 cut(s)	52, 54, 158, 210, 412, 414, 523, 551
FaqI	GGGAC	1 cut(s)	526
FatI	CATG	2 cut(s)	208, 549
Fnu4HI	GCNGC	6 cut(s)	22, 96, 252, 302, 447, 450
Fsp4HI	GCNGC	6 cut(s)	22, 96, 252, 302, 447, 450
FspBI	CTAG	4 cut(s)	168, 180, 255, 462
GlaI	GCGC	1 cut(s)	469
GluI	GCNGC	6 cut(s)	22, 96, 252, 302, 447, 450
GsuI	CTGGAG	1 cut(s)	492
HaeII	RGCGCY	1 cut(s)	471
HhaI	GCGC	1 cut(s)	470
Hin1II	CATG	2 cut(s)	212, 553
Hin6I	GCGC	1 cut(s)	468
HinP1I	GCGC	1 cut(s)	468
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	2 cut(s)	434, 527
HphI	GGTGA	5 cut(s)	163, 189, 245, 320, 491
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	2 cut(s)	385, 433
Hpy188III	TCNNGA	2 cut(s)	119, 550
Hpy8I	GTNNAC	1 cut(s)	295
HpyCH4V	TGCA	4 cut(s)	4, 24, 73, 501
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 458, 467
HpyF3I	CTNAG	2 cut(s)	147, 374
Hsp92II	CATG	2 cut(s)	212, 553
HspAI	GCGC	1 cut(s)	468
Kzo9I	GATC	1 cut(s)	385
Lsp1109I	GCAGC	5 cut(s)	8, 82, 238, 436, 458
MaeI	CTAG	4 cut(s)	168, 180, 255, 462
MaeIII	GTNAC	2 cut(s)	308, 533
MalI	GATC	1 cut(s)	387
MboI	GATC	1 cut(s)	385
MboII	GAAGA	1 cut(s)	343
MluCI	AATT	4 cut(s)	27, 79, 107, 227
MnlI	CCTC	1 cut(s)	390
MseI	TTAA	5 cut(s)	111, 222, 239, 273, 562
MspA1I	CMGCKG	3 cut(s)	21, 95, 449
MspR9I	CCNGG	2 cut(s)	201, 314
MvaI	CCWGG	2 cut(s)	201, 314
MwoI	GCNNNNNNNGC	3 cut(s)	101, 458, 467
NdeII	GATC	1 cut(s)	385
NheI	GCTAGC	2 cut(s)	179, 254
NlaIII	CATG	2 cut(s)	212, 553
NlaIV	GGNNCC	1 cut(s)	514
NmuCI	GTSAC	2 cut(s)	308, 533
PagI	TCATGA	1 cut(s)	549
PfeI	GAWTC	2 cut(s)	434, 527
PflFI	GACNNNGTC	1 cut(s)	545
PflMI	CCANNNNNTGG	1 cut(s)	522
PkrI	GCNGC	6 cut(s)	23, 97, 253, 303, 448, 451
PshBI	ATTAAT	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	199, 312
PspEI	GGTNACC	1 cut(s)	308
PspGI	CCWGG	2 cut(s)	199, 312
PspN4I	GGNNCC	1 cut(s)	514
PspPI	GGNCC	3 cut(s)	116, 216, 513
PsrI	GAACNNNNNNTAC	2 cut(s)	310, 342
PstNI	CAGNNNCTG	1 cut(s)	452
PsyI	GACNNNGTC	1 cut(s)	545
PvuII	CAGCTG	2 cut(s)	21, 449
SaqAI	TTAA	5 cut(s)	111, 222, 239, 273, 562
SatI	GCNGC	6 cut(s)	22, 96, 252, 302, 447, 450
Sau3AI	GATC	1 cut(s)	385
Sau96I	GGNCC	3 cut(s)	116, 216, 513
ScrFI	CCNGG	2 cut(s)	201, 314
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	3 cut(s)	116, 216, 513
Sse9I	AATT	4 cut(s)	27, 79, 107, 227
SsiI	CCGC	2 cut(s)	93, 302
SspMI	CTAG	4 cut(s)	168, 180, 255, 462
StyD4I	CCNGG	2 cut(s)	199, 312
TaqI	TCGA	1 cut(s)	139
TasI	AATT	4 cut(s)	27, 79, 107, 227
TauI	GCSGC	1 cut(s)	304
TfiI	GAWTC	2 cut(s)	434, 527
Tru1I	TTAA	5 cut(s)	111, 222, 239, 273, 562
Tru9I	TTAA	5 cut(s)	111, 222, 239, 273, 562
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	2 cut(s)	308, 533
TseI	GCWGC	5 cut(s)	21, 95, 251, 446, 449
Tsp45I	GTSAC	2 cut(s)	308, 533
TspDTI	ATGAA	2 cut(s)	23, 240
TspRI	CASTG	1 cut(s)	265
Tth111I	GACNNNGTC	1 cut(s)	545
Van91I	CCANNNNNTGG	1 cut(s)	522
VpaK11BI	GGWCC	3 cut(s)	116, 216, 513
VspI	ATTAAT	1 cut(s)	222
XapI	RAATTY	2 cut(s)	107, 227
XspI	CTAG	4 cut(s)	168, 180, 255, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.