Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0010364

Physical Location & Seq

Genomic Coordinates Forward (+)

16476380 .. 16478766

Gene Structure 2387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G016110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCATTTCTGAGGTCAGTGGCCACCACTAGTGCCATAGCTGCCTCTCTATTACCCGCCGCCATTGCCCTTTCTTCTTCTTCTTCTTCCTCTCAATCTTTCCGATTCCCTAAATCCCAAAACATCTCCTTTTTCTCCTCCTCCTTCTCCTCCCCCCCAAACCCAAAACCTCTGTTCCTCGCTACAAGCCTCACCAGCTCTCCCTCAGCTCTCCACATGGACGCGCCCACATCGGAACAGAAGCCCTCCTCTCAGAGTGATGCTGTATTGCCAGAGCTACTGACAGAGTACATGGTAGACATGAAATGTGAGAGTTGTGTTAAGGCTGTCAAGAATAAGTTACAAGTTGTTGATGGGGTTAAAAGTGTAGAGGCGGACCTCGACACCCAAGTTGTTAGGATTCTGGGTGCAACCCCTCTGAAGATCATGACTGAAGCTCTCGAGCAGACAGGTCGAAAAGCGAGATTAATTGGGCAGGGGATCCCAGAAGATTTCTTGGTTTCCGCTGCTGTCGCTGAATTTAAAGGTCCAGATGTTTTTGGTGTGGTTCGATTTGCTCAGGTGAATATGGAGTTGGCTAGGATTGAAGCTAGCTTTAGTGGGTTATCACCTGGGAAACATGGTTGGTCCATTAATGAATTTGGTGATTTAACAAAAGGTGCTGCTAGCACTGGAAAAGTATTTAATCCATCTACAGAAAGTGTAAACGAGCCGCTTGGTGACCTGGGAACATTGGATACTGATGAGAATGGCAATGCTTTCTTCTCTGGTGTCAAAGAGAAGCTGAGAGTTTCTGATCTTATTGGGAGGTCAATAGCAGTATATGGAACTGCTGACAAGTCAGATTCGGGTGTCGCAGCTGCTGTAATCGCTAGAAGCGCTGGAGTAGGTGAGAACTACAAGAAGCTTTGCACTTGTGATGGGACCACGATATGGGAATCAAGTGACAAAGACTTTGTCATGAGCAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006878 GO:0008047 GO:0008150 GO:0008270 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016530 GO:0016531 GO:0016532 GO:0019725 GO:0030003 GO:0030234 GO:0042592 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050790 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0065009 GO:0098771 GO:0098772 GO:0140104

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

HMA Sod_Cu

Protein Analysis

324

Amino Acids

34.18

Weight (kDa)

5.28

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	98 - 152	1.8e-10	Heavy-metal-associated domain
Sod_Cu	PF00080	180 - 282	3.9e-18	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12520 AT1G12520 AT1G12520
fragaria_vesca	FvH4_5g01090
malus_domestica	MD00G1069800.v1.1 MD04G1072900.v1.1
prunus_persica	Prupe.5G084900_v2.0.a1 Prupe.5G084900_v2.0.a1
pyrus_communis	pycom04g06600 pycom06g06690
rosa_chinensis	RchiOBHm_Chr7g0200231
rosa_laevigata	RLG00000003742
rosa_multiflora	Rmu_sc0019284.1_g000001 Rmu_sc0025955.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256210
rosa_rugosa	Rorug07G0058600
rosa_samantha	Rh7AG184100 Rh7BG186800 Rh7CG194500 Rh7DG188200
rosa_wichuraiana	Rw7G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	933
AccI	GTMKAC	1 cut(s)	297
AccII	CGCG	1 cut(s)	224
AciI	CCGC	5 cut(s)	57, 60, 374, 504, 713
AclWI	GGATC	2 cut(s)	475, 488
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	2 cut(s)	518, 638
AcuI	CTGAAG	2 cut(s)	440, 453
AfaI	GTAC	1 cut(s)	290
AfeI	AGCGCT	1 cut(s)	880
AfiI	CCNNNNNNNGG	1 cut(s)	933
AgsI	TTSAA	1 cut(s)	587
AhlI	ACTAGT	1 cut(s)	29
AjnI	CCWGG	2 cut(s)	610, 723
AjuI	GAANNNNNNNTTGG	2 cut(s)	557, 589
AlwI	GGATC	2 cut(s)	475, 488
AlwNI	CAGNNNCTG	1 cut(s)	863
Ama87I	CYCGRG	1 cut(s)	440
Aor51HI	AGCGCT	1 cut(s)	880
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	5 cut(s)	41, 506, 662, 857, 860
ApoI	RAATTY	2 cut(s)	518, 638
ArsI	GACNNNNNNTTYG	4 cut(s)	938, 942, 970, 974
AseI	ATTAAT	2 cut(s)	467, 633
AspLEI	GCGC	2 cut(s)	226, 881
AspS9I	GGNCC	4 cut(s)	376, 527, 627, 924
AsuHPI	GGTGA	6 cut(s)	184, 574, 600, 656, 731, 902
AsuNHI	GCTAGC	2 cut(s)	590, 665
AvaI	CYCGRG	1 cut(s)	440
AvaII	GGWCC	4 cut(s)	376, 527, 627, 924
BalI	TGGCCA	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	480
BbvCI	CCTCAGC	1 cut(s)	205
BbvI	GCAGC	5 cut(s)	28, 493, 649, 847, 869
BccI	CCATC	3 cut(s)	347, 697, 914
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BciT130I	CCWGG	2 cut(s)	612, 725
BciVI	GTATCC	1 cut(s)	730
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	5 cut(s)	30, 579, 591, 666, 873
BfmI	CTRYAG	1 cut(s)	693
BfoI	RGCGCY	1 cut(s)	882
BfuI	GTATCC	1 cut(s)	730
BisI	GCNGC	7 cut(s)	42, 60, 507, 663, 713, 858, 861
BlsI	GCNGC	7 cut(s)	43, 61, 508, 664, 714, 859, 862
Bme1390I	CCNGG	2 cut(s)	612, 725
Bme18I	GGWCC	4 cut(s)	376, 527, 627, 924
BmeT110I	CYCGRG	1 cut(s)	440
BmgT120I	GGNCC	4 cut(s)	376, 527, 627, 924
BmiI	GGNNCC	2 cut(s)	482, 925
BmrFI	CCNGG	2 cut(s)	612, 725
BmsI	GCATC	1 cut(s)	250
BmtI	GCTAGC	2 cut(s)	594, 669
BpmI	CTGGAG	1 cut(s)	903
Bpu10I	CCTNAGC	2 cut(s)	205, 558
BsaJI	CCNNGG	2 cut(s)	611, 724
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	933
Bse1I	ACTGG	1 cut(s)	676
Bse3DI	GCAATG	2 cut(s)	63, 760
BseBI	CCWGG	2 cut(s)	612, 725
BseDI	CCNNGG	2 cut(s)	611, 724
BseLI	CCNNNNNNNGG	1 cut(s)	933
BseMI	GCAATG	2 cut(s)	63, 760
BseMII	CTCAG	4 cut(s)	219, 266, 572, 776
BseNI	ACTGG	1 cut(s)	676
BseRI	GAGGAG	4 cut(s)	127, 130, 139, 238
BseXI	GCAGC	5 cut(s)	28, 493, 649, 847, 869
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	440
BslFI	GGGAC	1 cut(s)	937
BslI	CCNNNNNNNGG	1 cut(s)	933
BsmFI	GGGAC	1 cut(s)	937
BsnI	GGCC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	440
Bsp143I	GATC	3 cut(s)	423, 480, 796
BspACI	CCGC	5 cut(s)	57, 60, 374, 504, 713
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	4 cut(s)	218, 265, 571, 777
BspFNI	CGCG	1 cut(s)	224
BspHI	TCATGA	2 cut(s)	426, 960
BspLI	GGNNCC	2 cut(s)	482, 925
BspOI	GCTAGC	2 cut(s)	594, 669
BspPI	GGATC	2 cut(s)	475, 488
BsrDI	GCAATG	2 cut(s)	63, 760
BsrI	ACTGG	1 cut(s)	676
BssECI	CCNNGG	2 cut(s)	611, 724
BssMI	GATC	3 cut(s)	423, 480, 796
Bst2UI	CCWGG	2 cut(s)	612, 725
BstC8I	GCNNGC	2 cut(s)	592, 667
BstDEI	CTNAG	5 cut(s)	11, 205, 252, 558, 785
BstEII	GGTNACC	1 cut(s)	719
BstFNI	CGCG	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	882
BstHHI	GCGC	2 cut(s)	226, 881
BstKTI	GATC	3 cut(s)	426, 483, 799
BstMBI	GATC	3 cut(s)	423, 480, 796
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 65, 195, 512, 869, 878
BstNI	CCWGG	2 cut(s)	612, 725
BstPI	GGTNACC	1 cut(s)	719
BstSCI	CCNGG	2 cut(s)	610, 723
BstSFI	CTRYAG	1 cut(s)	693
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	5 cut(s)	28, 493, 649, 847, 869
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
BsuI	GTATCC	1 cut(s)	730
BsuRI	GGCC	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	24, 669
Cac8I	GCNNGC	2 cut(s)	592, 667
CaiI	CAGNNNCTG	1 cut(s)	863
CciI	TCATGA	2 cut(s)	426, 960
CfoI	GCGC	2 cut(s)	226, 881
Cfr13I	GGNCC	4 cut(s)	376, 527, 627, 924
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	6 cut(s)	217, 292, 301, 427, 620, 961
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	5 cut(s)	11, 205, 252, 558, 785
DpnI	GATC	3 cut(s)	425, 482, 798
DpnII	GATC	3 cut(s)	423, 480, 796
DraI	TTTAAA	1 cut(s)	523
EaeI	YGGCCR	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	389
Eco47I	GGWCC	4 cut(s)	376, 527, 627, 924
Eco47III	AGCGCT	1 cut(s)	880
Eco57I	CTGAAG	2 cut(s)	440, 453
Eco88I	CYCGRG	1 cut(s)	440
Eco91I	GGTNACC	1 cut(s)	719
EcoO65I	GGTNACC	1 cut(s)	719
EcoRII	CCWGG	2 cut(s)	610, 723
FaeI	CATG	6 cut(s)	220, 295, 304, 430, 623, 964
FaqI	GGGAC	1 cut(s)	937
FatI	CATG	6 cut(s)	216, 291, 300, 426, 619, 960
FauI	CCCGC	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	7 cut(s)	42, 60, 507, 663, 713, 858, 861
Fsp4HI	GCNGC	7 cut(s)	42, 60, 507, 663, 713, 858, 861
FspBI	CTAG	5 cut(s)	30, 579, 591, 666, 873
GlaI	GCGC	2 cut(s)	225, 880
GluI	GCNGC	7 cut(s)	42, 60, 507, 663, 713, 858, 861
GsuI	CTGGAG	1 cut(s)	903
HaeII	RGCGCY	1 cut(s)	882
HaeIII	GGCC	1 cut(s)	23
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	2 cut(s)	226, 881
Hin1II	CATG	6 cut(s)	220, 295, 304, 430, 623, 964
Hin6I	GCGC	2 cut(s)	224, 879
HinP1I	GCGC	2 cut(s)	224, 879
HindIII	AAGCTT	1 cut(s)	905
HinfI	GANTC	4 cut(s)	105, 400, 845, 938
HphI	GGTGA	6 cut(s)	184, 574, 600, 656, 731, 902
Hpy166II	GTNNAC	2 cut(s)	298, 706
Hpy188I	TCNGA	7 cut(s)	12, 104, 235, 255, 420, 796, 844
Hpy188III	TCNNGA	5 cut(s)	331, 427, 440, 530, 961
Hpy8I	GTNNAC	2 cut(s)	298, 706
HpyAV	CCTTC	1 cut(s)	154
HpyCH4V	TGCA	2 cut(s)	410, 912
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 65, 195, 512, 869, 878
HpyF3I	CTNAG	5 cut(s)	11, 205, 252, 558, 785
Hsp92II	CATG	6 cut(s)	220, 295, 304, 430, 623, 964
HspAI	GCGC	2 cut(s)	224, 879
Kzo9I	GATC	3 cut(s)	423, 480, 796
Lsp1109I	GCAGC	5 cut(s)	28, 493, 649, 847, 869
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	5 cut(s)	30, 579, 591, 666, 873
MaeIII	GTNAC	3 cut(s)	339, 719, 944
MalI	GATC	3 cut(s)	425, 482, 798
MboI	GATC	3 cut(s)	423, 480, 796
MboII	GAAGA	8 cut(s)	66, 69, 72, 75, 78, 433, 500, 754
MflI	RGATCY	1 cut(s)	480
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	3 cut(s)	468, 518, 638
MluNI	TGGCCA	1 cut(s)	23
Mox20I	TGGCCA	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	8 cut(s)	321, 360, 467, 522, 633, 650, 684, 973
Msp20I	TGGCCA	1 cut(s)	23
MspA1I	CMGCKG	2 cut(s)	506, 860
MspR9I	CCNGG	2 cut(s)	612, 725
MvaI	CCWGG	2 cut(s)	612, 725
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	6 cut(s)	41, 65, 195, 512, 869, 878
NdeII	GATC	3 cut(s)	423, 480, 796
NheI	GCTAGC	2 cut(s)	590, 665
NlaIII	CATG	6 cut(s)	220, 295, 304, 430, 623, 964
NlaIV	GGNNCC	2 cut(s)	482, 925
NmuCI	GTSAC	2 cut(s)	719, 944
PaeR7I	CTCGAG	1 cut(s)	440
PagI	TCATGA	2 cut(s)	426, 960
PfeI	GAWTC	4 cut(s)	105, 400, 845, 938
PflFI	GACNNNGTC	1 cut(s)	956
PflMI	CCANNNNNTGG	1 cut(s)	933
PkrI	GCNGC	7 cut(s)	43, 61, 508, 664, 714, 859, 862
PshBI	ATTAAT	2 cut(s)	467, 633
Psp6I	CCWGG	2 cut(s)	610, 723
PspEI	GGTNACC	1 cut(s)	719
PspGI	CCWGG	2 cut(s)	610, 723
PspN4I	GGNNCC	2 cut(s)	482, 925
PspPI	GGNCC	4 cut(s)	376, 527, 627, 924
PsrI	GAACNNNNNNTAC	2 cut(s)	721, 753
PstNI	CAGNNNCTG	1 cut(s)	863
PsuI	RGATCY	1 cut(s)	480
PsyI	GACNNNGTC	1 cut(s)	956
PvuII	CAGCTG	1 cut(s)	860
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SaqAI	TTAA	8 cut(s)	321, 360, 467, 522, 633, 650, 684, 973
SatI	GCNGC	7 cut(s)	42, 60, 507, 663, 713, 858, 861
Sau3AI	GATC	3 cut(s)	423, 480, 796
Sau96I	GGNCC	4 cut(s)	376, 527, 627, 924
ScrFI	CCNGG	2 cut(s)	612, 725
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	693
Sfr274I	CTCGAG	1 cut(s)	440
SinI	GGWCC	4 cut(s)	376, 527, 627, 924
SlaI	CTCGAG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
SpeI	ACTAGT	1 cut(s)	29
Sse9I	AATT	3 cut(s)	468, 518, 638
SsiI	CCGC	5 cut(s)	57, 60, 374, 504, 713
SspMI	CTAG	5 cut(s)	30, 579, 591, 666, 873
StyD4I	CCNGG	2 cut(s)	610, 723
TaqI	TCGA	4 cut(s)	381, 441, 454, 550
TasI	AATT	3 cut(s)	468, 518, 638
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	2 cut(s)	62, 715
TfiI	GAWTC	4 cut(s)	105, 400, 845, 938
Tru1I	TTAA	8 cut(s)	321, 360, 467, 522, 633, 650, 684, 973
Tru9I	TTAA	8 cut(s)	321, 360, 467, 522, 633, 650, 684, 973
TscAI	CASTG	2 cut(s)	24, 676
TseFI	GTSAC	2 cut(s)	719, 944
TseI	GCWGC	5 cut(s)	41, 506, 662, 857, 860
Tsp45I	GTSAC	2 cut(s)	719, 944
TspDTI	ATGAA	2 cut(s)	317, 651
TspRI	CASTG	2 cut(s)	24, 676
Tth111I	GACNNNGTC	1 cut(s)	956
Van91I	CCANNNNNTGG	1 cut(s)	933
VpaK11BI	GGWCC	4 cut(s)	376, 527, 627, 924
VspI	ATTAAT	2 cut(s)	467, 633
XapI	RAATTY	2 cut(s)	518, 638
XhoI	CTCGAG	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	297
XspI	CTAG	5 cut(s)	30, 579, 591, 666, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.