Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0010364

Physical Location & Seq

Genomic Coordinates Forward (+)

13601768 .. 13604916

Gene Structure 3149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1069800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCATTTCTGAGGTCAGTGGCTACGACTACTGCCATAGCAGCTGCCTTTGCATTTCCTGCCGCCGTTGCCCTTTCTTCCCTCTCTCCGTCCTCCTCCTCCTCCTTTTTATCTTTTCGATTTCGATTCCCAAAACCCCAAAACAGAGCCTTTCTGTCCTCCGCGCCGTCACTGCTCAACCCAAACCCTCCGTTCCTCGCTACAAGCTTCGCCCACTCGCCTTCGGCTACCCAGATGGACGCGCCCGCATCGGAGCAAAAGCCATCCTTTCAGAGTGATGGTGCGTTGCCAGAGCTACTGACAGAGTACATGGTGGATATGAAATGTAACGGTTGTGTTAAGTCTGTCAAGAACAAGTTAGAAACTCTTGAGGGGGTAAAAAGTGTAGAGGTAGACCTCAACAGTCAAGTCGTTAGGGTTCTGGGTTCAACGCCTTTGAAGACCATGACTGAAGCTTTGGAGCAGACGGGGCAAAAAGGGAGATTAATTGGGCAGGGGATCCCTGAAGATTTTTTGGTTTCTGCGGCTGTTTCTGAATTTAAAGGTCCAGATGTGTTTGGTGTGGTTCGTTTAGCTCAGGTGAATATGGAATTGGCTAGGATCGAGGCCAACTTTAGTGGGTTGACTCCTGGGAAACATGGTTGGTCGATCAATGAATTTGGTGATTTAACAGAAGGAACTAAAAGCACTGGAAAAGTATTTAACCCATCAAATGAAGCAAACGAGCCGCTTGGTGACCTGGGAACACTGGAAAGTGATGAGAGTGGTAATGCCTTCTTCTCTGGGGTCAAAGAGAAGCTGAGAGTTGCTGATCTTATTGGGAGGTCAATAGCGATATATGAAACTGCTGATAAGTCGGCCTCTGGTATCGCGGCTGCTGTGATTGCTAGAAGTGCTGGAGCTGGCGAGAACTACAAAAGGCTTTGCACTTGTGACGGAACCACCATATGGGAATCAACGGGCAACGATTTCGTCACCAGCAAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006878 GO:0008047 GO:0008150 GO:0008270 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016530 GO:0016531 GO:0016532 GO:0019725 GO:0030003 GO:0030234 GO:0042592 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050790 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0065009 GO:0098771 GO:0098772 GO:0140104

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

HMA Sod_Cu

Protein Analysis

330

Amino Acids

34.81

Weight (kDa)

5.31

Isoelectric Point (pI)

34.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	104 - 157	3.5e-12	Heavy-metal-associated domain
Sod_Cu	PF00080	186 - 291	2.1e-18	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12520 AT1G12520 AT1G12520
fragaria_vesca	FvH4_5g01090
malus_domestica	MD00G1069800.v1.1 MD04G1072900.v1.1
prunus_persica	Prupe.5G084900_v2.0.a1 Prupe.5G084900_v2.0.a1
pyrus_communis	pycom04g06600 pycom06g06690
rosa_chinensis	RchiOBHm_Chr7g0200231
rosa_laevigata	RLG00000003742
rosa_multiflora	Rmu_sc0019284.1_g000001 Rmu_sc0025955.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256210
rosa_rugosa	Rorug07G0058600
rosa_samantha	Rh7AG184100 Rh7BG186800 Rh7CG194500 Rh7DG188200
rosa_wichuraiana	Rw7G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	948
AccI	GTMKAC	1 cut(s)	393
AccII	CGCG	3 cut(s)	164, 242, 872
AciI	CCGC	6 cut(s)	63, 162, 246, 524, 728, 872
AclWI	GGATC	3 cut(s)	493, 506, 608
AcsI	RAATTY	2 cut(s)	536, 656
AcuI	CTGAAG	2 cut(s)	471, 525
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	948
AgsI	TTSAA	2 cut(s)	429, 439
AjnI	CCWGG	2 cut(s)	628, 738
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AluBI	AGCT	7 cut(s)	44, 207, 295, 455, 575, 799, 902
AluI	AGCT	7 cut(s)	44, 207, 295, 455, 575, 799, 902
AlwI	GGATC	3 cut(s)	493, 506, 608
AoxI	GGCC	2 cut(s)	606, 858
ApeKI	GCWGC	3 cut(s)	41, 44, 875
ApoI	RAATTY	2 cut(s)	536, 656
ArsI	GACNNNNNNTTYG	2 cut(s)	439, 471
AseI	ATTAAT	1 cut(s)	485
AspLEI	GCGC	2 cut(s)	166, 244
AspS9I	GGNCC	1 cut(s)	545
AsuHPI	GGTGA	4 cut(s)	592, 674, 746, 967
AvaII	GGWCC	1 cut(s)	545
BamHI	GGATCC	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	446
BbvI	GCAGC	3 cut(s)	31, 53, 862
BccI	CCATC	4 cut(s)	229, 271, 272, 715
BceAI	ACGGC	2 cut(s)	50, 151
BcgI	CGANNNNNNTGC	2 cut(s)	952, 986
BciT130I	CCWGG	2 cut(s)	630, 740
BfaI	CTAG	2 cut(s)	597, 888
BisI	GCNGC	7 cut(s)	42, 45, 63, 525, 728, 873, 876
BlsI	GCNGC	7 cut(s)	43, 46, 64, 526, 729, 874, 877
Bme1390I	CCNGG	2 cut(s)	630, 740
Bme18I	GGWCC	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	2 cut(s)	500, 940
BmrFI	CCNGG	2 cut(s)	630, 740
BmsI	GCATC	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	446
BpmI	CTGGAG	1 cut(s)	918
Bpu10I	CCTNAGC	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	389
BsaJI	CCNNGG	2 cut(s)	629, 739
Bsc4I	CCNNNNNNNGG	1 cut(s)	948
Bse1I	ACTGG	2 cut(s)	694, 753
BseBI	CCWGG	2 cut(s)	630, 740
BseDI	CCNNGG	2 cut(s)	629, 739
BseGI	GGATG	1 cut(s)	263
BseLI	CCNNNNNNNGG	1 cut(s)	948
BseMII	CTCAG	2 cut(s)	590, 791
BseNI	ACTGG	2 cut(s)	694, 753
BseRI	GAGGAG	3 cut(s)	85, 88, 91
BseXI	GCAGC	3 cut(s)	31, 53, 862
Bsh1236I	CGCG	3 cut(s)	164, 242, 872
BshFI	GGCC	2 cut(s)	608, 860
BslI	CCNNNNNNNGG	1 cut(s)	948
BsnI	GGCC	2 cut(s)	608, 860
Bsp143I	GATC	4 cut(s)	498, 600, 648, 811
BspACI	CCGC	6 cut(s)	63, 162, 246, 524, 728, 872
BspANI	GGCC	2 cut(s)	608, 860
BspCNI	CTCAG	2 cut(s)	589, 792
BspFNI	CGCG	3 cut(s)	164, 242, 872
BspLI	GGNNCC	2 cut(s)	500, 940
BspPI	GGATC	3 cut(s)	493, 506, 608
BsrI	ACTGG	2 cut(s)	694, 753
BssECI	CCNNGG	2 cut(s)	629, 739
BssMI	GATC	4 cut(s)	498, 600, 648, 811
Bst2UI	CCWGG	2 cut(s)	630, 740
Bst4CI	ACNGT	2 cut(s)	332, 404
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	246, 904
BstDEI	CTNAG	3 cut(s)	11, 576, 800
BstEII	GGTNACC	1 cut(s)	734
BstF5I	GGATG	1 cut(s)	263
BstFNI	CGCG	3 cut(s)	164, 242, 872
BstHHI	GCGC	2 cut(s)	166, 244
BstKTI	GATC	4 cut(s)	501, 603, 651, 814
BstMBI	GATC	4 cut(s)	498, 600, 648, 811
BstMWI	GCNNNNNNNGC	8 cut(s)	41, 50, 59, 68, 172, 469, 884, 893
BstNI	CCWGG	2 cut(s)	630, 740
BstPI	GGTNACC	1 cut(s)	734
BstSCI	CCNGG	2 cut(s)	628, 738
BstUI	CGCG	3 cut(s)	164, 242, 872
BstV1I	GCAGC	3 cut(s)	31, 53, 862
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	1 cut(s)	498
BstYI	RGATCY	1 cut(s)	498
BsuRI	GGCC	2 cut(s)	608, 860
BtsCI	GGATG	1 cut(s)	263
BtsI	GCAGTG	1 cut(s)	170
BtsIMutI	CAGTG	4 cut(s)	24, 170, 687, 746
Cac8I	GCNNGC	2 cut(s)	246, 904
CfoI	GCGC	2 cut(s)	166, 244
Cfr13I	GGNCC	1 cut(s)	545
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	307
CspCI	CAANNNNNGTGG	2 cut(s)	598, 633
CviAII	CATG	3 cut(s)	310, 445, 638
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	3 cut(s)	11, 576, 800
DpnI	GATC	4 cut(s)	500, 602, 650, 813
DpnII	GATC	4 cut(s)	498, 600, 648, 811
DraI	TTTAAA	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	545
Eco57I	CTGAAG	2 cut(s)	471, 525
Eco91I	GGTNACC	1 cut(s)	734
EcoO65I	GGTNACC	1 cut(s)	734
EcoRII	CCWGG	2 cut(s)	628, 738
FaeI	CATG	3 cut(s)	313, 448, 641
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FatI	CATG	3 cut(s)	309, 444, 637
FauI	CCCGC	1 cut(s)	253
FauNDI	CATATG	1 cut(s)	947
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	7 cut(s)	42, 45, 63, 525, 728, 873, 876
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	7 cut(s)	42, 45, 63, 525, 728, 873, 876
FspBI	CTAG	2 cut(s)	597, 888
GlaI	GCGC	2 cut(s)	165, 243
GluI	GCNGC	7 cut(s)	42, 45, 63, 525, 728, 873, 876
GsuI	CTGGAG	1 cut(s)	918
HaeIII	GGCC	2 cut(s)	608, 860
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	2 cut(s)	166, 244
Hin1II	CATG	3 cut(s)	313, 448, 641
Hin6I	GCGC	2 cut(s)	164, 242
HinP1I	GCGC	2 cut(s)	164, 242
HincII	GTYRAC	1 cut(s)	624
HindII	GTYRAC	1 cut(s)	624
HindIII	AAGCTT	2 cut(s)	205, 453
HinfI	GANTC	3 cut(s)	126, 625, 953
HphI	GGTGA	4 cut(s)	592, 674, 746, 967
Hpy166II	GTNNAC	2 cut(s)	394, 624
Hpy188I	TCNGA	5 cut(s)	12, 253, 273, 535, 989
Hpy188III	TCNNGA	3 cut(s)	349, 368, 548
Hpy8I	GTNNAC	2 cut(s)	394, 624
HpyAV	CCTTC	3 cut(s)	231, 668, 784
HpyCH4III	ACNGT	2 cut(s)	332, 404
HpyCH4V	TGCA	2 cut(s)	53, 927
HpyF10VI	GCNNNNNNNGC	8 cut(s)	41, 50, 59, 68, 172, 469, 884, 893
HpyF3I	CTNAG	3 cut(s)	11, 576, 800
Hsp92II	CATG	3 cut(s)	313, 448, 641
HspAI	GCGC	2 cut(s)	164, 242
Kzo9I	GATC	4 cut(s)	498, 600, 648, 811
LmnI	GCTCC	3 cut(s)	253, 460, 899
Lsp1109I	GCAGC	3 cut(s)	31, 53, 862
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	2 cut(s)	597, 888
MaeIII	GTNAC	5 cut(s)	168, 326, 734, 932, 973
MalI	GATC	4 cut(s)	500, 602, 650, 813
MboI	GATC	4 cut(s)	498, 600, 648, 811
MboII	GAAGA	4 cut(s)	69, 451, 518, 769
MflI	RGATCY	1 cut(s)	498
MluCI	AATT	4 cut(s)	486, 536, 590, 656
MlyI	GAGTC	1 cut(s)	619
MseI	TTAA	5 cut(s)	339, 485, 540, 668, 702
MspA1I	CMGCKG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	630, 740
MvaI	CCWGG	2 cut(s)	630, 740
MvnI	CGCG	3 cut(s)	164, 242, 872
MwoI	GCNNNNNNNGC	8 cut(s)	41, 50, 59, 68, 172, 469, 884, 893
NdeI	CATATG	1 cut(s)	947
NdeII	GATC	4 cut(s)	498, 600, 648, 811
NlaIII	CATG	3 cut(s)	313, 448, 641
NlaIV	GGNNCC	2 cut(s)	500, 940
NmuCI	GTSAC	4 cut(s)	168, 734, 932, 973
PfeI	GAWTC	2 cut(s)	126, 953
PflMI	CCANNNNNTGG	1 cut(s)	948
PkrI	GCNGC	7 cut(s)	43, 46, 64, 526, 729, 874, 877
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
PshBI	ATTAAT	1 cut(s)	485
Psp6I	CCWGG	2 cut(s)	628, 738
PspEI	GGTNACC	1 cut(s)	734
PspGI	CCWGG	2 cut(s)	628, 738
PspN4I	GGNNCC	2 cut(s)	500, 940
PspPI	GGNCC	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	498
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SaqAI	TTAA	5 cut(s)	339, 485, 540, 668, 702
SatI	GCNGC	7 cut(s)	42, 45, 63, 525, 728, 873, 876
Sau3AI	GATC	4 cut(s)	498, 600, 648, 811
Sau96I	GGNCC	1 cut(s)	545
SchI	GAGTC	1 cut(s)	619
ScrFI	CCNGG	2 cut(s)	630, 740
SfaNI	GCATC	1 cut(s)	257
SinI	GGWCC	1 cut(s)	545
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	4 cut(s)	486, 536, 590, 656
SsiI	CCGC	6 cut(s)	63, 162, 246, 524, 728, 872
SspMI	CTAG	2 cut(s)	597, 888
StyD4I	CCNGG	2 cut(s)	628, 738
TaaI	ACNGT	2 cut(s)	332, 404
TaqI	TCGA	4 cut(s)	118, 124, 603, 647
TasI	AATT	4 cut(s)	486, 536, 590, 656
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	4 cut(s)	65, 527, 730, 875
TfiI	GAWTC	2 cut(s)	126, 953
Tru1I	TTAA	5 cut(s)	339, 485, 540, 668, 702
Tru9I	TTAA	5 cut(s)	339, 485, 540, 668, 702
TscAI	CASTG	4 cut(s)	24, 177, 694, 753
TseFI	GTSAC	4 cut(s)	168, 734, 932, 973
TseI	GCWGC	3 cut(s)	41, 44, 875
Tsp45I	GTSAC	4 cut(s)	168, 734, 932, 973
TspDTI	ATGAA	4 cut(s)	335, 669, 729, 855
TspGWI	ACGGA	3 cut(s)	78, 180, 951
TspRI	CASTG	4 cut(s)	24, 177, 694, 753
Van91I	CCANNNNNTGG	1 cut(s)	948
VpaK11BI	GGWCC	1 cut(s)	545
VspI	ATTAAT	1 cut(s)	485
XapI	RAATTY	2 cut(s)	536, 656
XmiI	GTMKAC	1 cut(s)	393
XspI	CTAG	2 cut(s)	597, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.