Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010364

Physical Location & Seq

Genomic Coordinates Forward (+)

6674849 .. 6677803

Gene Structure 2955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g06600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGCATTTCTGAGGTCAGTGGCCACGACTGCTGTCATAGCTGCTGCCTCTGCATTTCCTGCGGCCGTTGCCCTTTCTTCCTTCTCTTCTTCTTCCTCCTCTGTATCGTTTCGATTCCCAAAACCCCAAAACCTCTCCTTTCTCTCCTCCGCGCCTTCTCTGCGGAACCCAAATCCTCCGTTCCTCGCTACAAGCTTCGCCCGCTCCCCCTCGGCTATCCAGATGGACGCGCCCACATCGGAGCAAAAGCAATCCTTTCAGAGTGATGGCGCTTTGCCGGAGCTACTGACGGAGTACATGGTGGATATGAAATGTGATGGATGTGTCAAATCTGTAAAGAACAAGTTAGAAACTGTGGATGAAGTAAAAAGTGTAGAGGTAGACCTCAACAGTCAAGTCGTCAGGGTTCTGGGTTCAACGCCTCTGAAGATCATGACTGAAGCTTTGGAGCAGACTGGTCGAAAAGCAAGATTAATTGGGCAGGGGATTCCTGAAGATTTCTTGGTTTCTGCTGCTGTTTCTGAGTTCAAGGGTCCAATTATTTTTGGTGTGGTTCGTTTTGCTCAGGTGAATATGGAATTGGCTAGGATTGAGGCCAACTTTAGTGGATTAACACCTGGAAAACATGGTTGGTCGATCAACGAATTTGGTGATCTAACGGAAGGTGCTGCAAGCACTGGAAAAGTATTTAAGCCATCAAATGAAGCAAAGGAGCCGCTTGGTGACCTGGGAACACTGGTAAGTGATGAGAGTGGTAATGCCTTCTTCTCTGGGGTCAAAGAGAAGCTGAGAGTTGCGGATCTTATTGGGCGGTCAATAGCGATATATGAAACTGCTGATAAATTGGACTCTGGTATCGCGGCTGCTGTGATTGCTAGAAGTGCTGGAGTCGGGGAGAACTACAAAAAGCTTTGCACTTGCGATGGAACCACCATATGGGAATCAACTGGCAACAACTTTGTCGCCAGCGAGATAGATTTGGACCTTCTTAGGCACCTTGTACACGAAGAGTCATTGTATTTGCTCGTATTATACTTCATAAGATCATTCTCCGGTGTCAGAATGCACACATTGTTTCACAATATAAAGACCAATTTCCATCATCGCCGCACCCTGCAGCATCCTATTTGGAGAAGCCATGGAGACGGAAATCACATCGTCACCATCCTCAACTGCGGCATCAAACACTACAAGAACTTCCGATTCGATAATTCGTCAAGAGAGCAGACTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006878 GO:0008047 GO:0008150 GO:0008270 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016530 GO:0016531 GO:0016532 GO:0019725 GO:0030003 GO:0030234 GO:0042592 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050790 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0065009 GO:0098771 GO:0098772 GO:0140104

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

HMA Sod_Cu

Protein Analysis

412

Amino Acids

44.89

Weight (kDa)

6.84

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	100 - 154	4.2e-10	Heavy-metal-associated domain
Sod_Cu	PF00080	183 - 284	7.5e-18	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12520 AT1G12520 AT1G12520
fragaria_vesca	FvH4_5g01090
malus_domestica	MD00G1069800.v1.1 MD04G1072900.v1.1
prunus_persica	Prupe.5G084900_v2.0.a1 Prupe.5G084900_v2.0.a1
pyrus_communis	pycom04g06600 pycom06g06690
rosa_chinensis	RchiOBHm_Chr7g0200231
rosa_laevigata	RLG00000003742
rosa_multiflora	Rmu_sc0019284.1_g000001 Rmu_sc0025955.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256210
rosa_rugosa	Rorug07G0058600
rosa_samantha	Rh7AG184100 Rh7BG186800 Rh7CG194500 Rh7DG188200
rosa_wichuraiana	Rw7G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	993
AccB7I	CCANNNNNTGG	1 cut(s)	936
AccBSI	CCGCTC	1 cut(s)	204
AccI	GTMKAC	1 cut(s)	381
AccII	CGCG	3 cut(s)	152, 230, 860
AclWI	GGATC	1 cut(s)	807
AcoI	YGGCCR	2 cut(s)	21, 63
AcsI	RAATTY	1 cut(s)	644
AcuI	CTGAAG	3 cut(s)	446, 459, 513
AfaI	GTAC	2 cut(s)	296, 1002
AfiI	CCNNNNNNNGG	1 cut(s)	936
AgsI	TTSAA	2 cut(s)	417, 529
AjnI	CCWGG	2 cut(s)	616, 726
AjuI	GAANNNNNNNTTGG	4 cut(s)	563, 595, 613, 645
AluBI	AGCT	6 cut(s)	41, 195, 283, 443, 787, 910
AluI	AGCT	6 cut(s)	41, 195, 283, 443, 787, 910
Alw26I	GTCTC	1 cut(s)	1137
AlwI	GGATC	1 cut(s)	807
AoxI	GGCC	3 cut(s)	21, 63, 594
ApeKI	GCWGC	6 cut(s)	41, 44, 512, 668, 863, 1117
ApoI	RAATTY	1 cut(s)	644
ArsI	GACNNNNNNTTYG	2 cut(s)	427, 459
AseI	ATTAAT	1 cut(s)	473
AspLEI	GCGC	3 cut(s)	154, 232, 272
AspS9I	GGNCC	2 cut(s)	533, 982
AsuHPI	GGTGA	4 cut(s)	580, 662, 734, 1153
AvaII	GGWCC	2 cut(s)	533, 982
BaeI	ACNNNNGTAYC	2 cut(s)	838, 871
BalI	TGGCCA	1 cut(s)	23
BanI	GGYRCC	1 cut(s)	993
BbvI	GCAGC	6 cut(s)	28, 31, 499, 655, 850, 1129
BccI	CCATC	7 cut(s)	217, 260, 311, 703, 917, 1107, 1172
BceAI	ACGGC	1 cut(s)	50
BcgI	CGANNNNNNTGC	2 cut(s)	440, 474
BciT130I	CCWGG	2 cut(s)	618, 728
BcoDI	GTCTC	1 cut(s)	1137
BfaI	CTAG	2 cut(s)	585, 876
BfmI	CTRYAG	1 cut(s)	1115
BfoI	RGCGCY	1 cut(s)	273
Bme1390I	CCNGG	2 cut(s)	618, 728
Bme18I	GGWCC	2 cut(s)	533, 982
BmgT120I	GGNCC	2 cut(s)	533, 982
BmiI	GGNNCC	5 cut(s)	167, 534, 714, 928, 995
BmrFI	CCNGG	2 cut(s)	618, 728
BmsI	GCATC	2 cut(s)	1129, 1188
BoxI	GACNNNNGTC	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	906
Bpu10I	CCTNAGC	1 cut(s)	564
BsaJI	CCNNGG	3 cut(s)	210, 727, 1138
BsaWI	WCCGGW	1 cut(s)	1052
Bsc4I	CCNNNNNNNGG	1 cut(s)	936
Bse1I	ACTGG	4 cut(s)	460, 682, 741, 952
BseBI	CCWGG	2 cut(s)	618, 728
BseDI	CCNNGG	3 cut(s)	210, 727, 1138
BseGI	GGATG	4 cut(s)	326, 364, 1120, 1164
BseLI	CCNNNNNNNGG	1 cut(s)	936
BseMII	CTCAG	3 cut(s)	513, 578, 779
BseNI	ACTGG	4 cut(s)	460, 682, 741, 952
BseRI	GAGGAG	2 cut(s)	88, 136
BseX3I	CGGCCG	1 cut(s)	63
BseXI	GCAGC	6 cut(s)	28, 31, 499, 655, 850, 1129
Bsh1236I	CGCG	3 cut(s)	152, 230, 860
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	3 cut(s)	23, 65, 596
BshNI	GGYRCC	1 cut(s)	993
BsiEI	CGRYCG	1 cut(s)	66
BsiSI	CCGG	2 cut(s)	278, 1053
BslI	CCNNNNNNNGG	1 cut(s)	936
BsmAI	GTCTC	1 cut(s)	1137
BsmBI	CGTCTC	1 cut(s)	1137
BsmI	GAATGC	1 cut(s)	1068
BsnI	GGCC	3 cut(s)	23, 65, 596
Bsp1407I	TGTACA	1 cut(s)	1000
Bsp143I	GATC	5 cut(s)	429, 636, 652, 799, 1043
Bsp19I	CCATGG	1 cut(s)	1138
BspANI	GGCC	3 cut(s)	23, 65, 596
BspCNI	CTCAG	3 cut(s)	514, 577, 780
BspFNI	CGCG	3 cut(s)	152, 230, 860
BspHI	TCATGA	1 cut(s)	432
BspLI	GGNNCC	5 cut(s)	167, 534, 714, 928, 995
BspMAI	CTGCAG	1 cut(s)	1119
BspPI	GGATC	1 cut(s)	807
BspT107I	GGYRCC	1 cut(s)	993
BsrBI	CCGCTC	1 cut(s)	204
BsrGI	TGTACA	1 cut(s)	1000
BsrI	ACTGG	4 cut(s)	460, 682, 741, 952
BssECI	CCNNGG	3 cut(s)	210, 727, 1138
BssMI	GATC	5 cut(s)	429, 636, 652, 799, 1043
BssT1I	CCWWGG	1 cut(s)	1138
Bst2UI	CCWGG	2 cut(s)	618, 728
Bst4CI	ACNGT	2 cut(s)	355, 392
Bst6I	CTCTTC	2 cut(s)	91, 1002
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstAUI	TGTACA	1 cut(s)	1000
BstC8I	GCNNGC	3 cut(s)	202, 673, 967
BstDEI	CTNAG	5 cut(s)	11, 522, 564, 788, 989
BstDSI	CCRYGG	1 cut(s)	1138
BstEII	GGTNACC	1 cut(s)	722
BstF5I	GGATG	4 cut(s)	326, 364, 1120, 1164
BstFNI	CGCG	3 cut(s)	152, 230, 860
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	3 cut(s)	154, 232, 272
BstKTI	GATC	5 cut(s)	432, 639, 655, 802, 1046
BstMAI	GTCTC	1 cut(s)	1137
BstMBI	GATC	5 cut(s)	429, 636, 652, 799, 1043
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	9 cut(s)	29, 38, 50, 59, 68, 160, 201, 872, 881
BstNI	CCWGG	2 cut(s)	618, 728
BstPAI	GACNNNNGTC	1 cut(s)	32
BstPI	GGTNACC	1 cut(s)	722
BstSCI	CCNGG	2 cut(s)	616, 726
BstSFI	CTRYAG	1 cut(s)	1115
BstUI	CGCG	3 cut(s)	152, 230, 860
BstV1I	GCAGC	6 cut(s)	28, 31, 499, 655, 850, 1129
BstX2I	RGATCY	1 cut(s)	799
BstYI	RGATCY	1 cut(s)	799
BstZI	CGGCCG	1 cut(s)	63
BsuRI	GGCC	3 cut(s)	23, 65, 596
BtgI	CCRYGG	1 cut(s)	1138
BtgZI	GCGATG	2 cut(s)	936, 1088
BtsCI	GGATG	4 cut(s)	326, 364, 1120, 1164
BtsIMutI	CAGTG	3 cut(s)	24, 675, 734
Cac8I	GCNNGC	3 cut(s)	202, 673, 967
CciI	TCATGA	1 cut(s)	432
CfoI	GCGC	3 cut(s)	154, 232, 272
Cfr13I	GGNCC	2 cut(s)	533, 982
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	2 cut(s)	295, 1001
CspCI	CAANNNNNGTGG	2 cut(s)	586, 621
CviAII	CATG	4 cut(s)	298, 433, 626, 1139
CviQI	GTAC	2 cut(s)	295, 1001
DdeI	CTNAG	5 cut(s)	11, 522, 564, 788, 989
DpnI	GATC	5 cut(s)	431, 638, 654, 801, 1045
DpnII	GATC	5 cut(s)	429, 636, 652, 799, 1043
EaeI	YGGCCR	2 cut(s)	21, 63
EagI	CGGCCG	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	91, 1002
EarI	CTCTTC	2 cut(s)	91, 1002
EclXI	CGGCCG	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	1138
Eco47I	GGWCC	2 cut(s)	533, 982
Eco52I	CGGCCG	1 cut(s)	63
Eco57I	CTGAAG	3 cut(s)	446, 459, 513
Eco91I	GGTNACC	1 cut(s)	722
EcoO65I	GGTNACC	1 cut(s)	722
EcoRII	CCWGG	2 cut(s)	616, 726
EcoT14I	CCWWGG	1 cut(s)	1138
ErhI	CCWWGG	1 cut(s)	1138
Esp3I	CGTCTC	1 cut(s)	1137
FaeI	CATG	4 cut(s)	301, 436, 629, 1142
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FatI	CATG	4 cut(s)	297, 432, 625, 1138
FauI	CCCGC	1 cut(s)	209
FauNDI	CATATG	1 cut(s)	935
FblI	GTMKAC	1 cut(s)	381
FokI	GGATG	4 cut(s)	333, 371, 1107, 1151
FspBI	CTAG	2 cut(s)	585, 876
GlaI	GCGC	3 cut(s)	153, 231, 271
GsuI	CTGGAG	1 cut(s)	906
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	3 cut(s)	23, 65, 596
HapII	CCGG	2 cut(s)	278, 1053
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	3 cut(s)	154, 232, 272
Hin1II	CATG	4 cut(s)	301, 436, 629, 1142
Hin6I	GCGC	3 cut(s)	152, 230, 270
HinP1I	GCGC	3 cut(s)	152, 230, 270
HindIII	AAGCTT	3 cut(s)	193, 441, 908
HinfI	GANTC	7 cut(s)	114, 487, 848, 888, 941, 1010, 1203
HpaII	CCGG	2 cut(s)	278, 1053
HphI	GGTGA	4 cut(s)	580, 662, 734, 1153
Hpy166II	GTNNAC	2 cut(s)	382, 1003
Hpy188I	TCNGA	7 cut(s)	12, 241, 261, 426, 523, 1061, 1202
Hpy188III	TCNNGA	4 cut(s)	220, 433, 491, 1218
Hpy8I	GTNNAC	2 cut(s)	382, 1003
HpyAV	CCTTC	5 cut(s)	91, 165, 656, 772, 995
HpyCH4III	ACNGT	2 cut(s)	355, 392
HpyCH4V	TGCA	5 cut(s)	53, 671, 915, 1066, 1117
HpyF10VI	GCNNNNNNNGC	9 cut(s)	29, 38, 50, 59, 68, 160, 201, 872, 881
HpyF3I	CTNAG	5 cut(s)	11, 522, 564, 788, 989
Hsp92II	CATG	4 cut(s)	301, 436, 629, 1142
HspAI	GCGC	3 cut(s)	152, 230, 270
Kzo9I	GATC	5 cut(s)	429, 636, 652, 799, 1043
LmnI	GCTCC	5 cut(s)	209, 241, 280, 448, 712
Lsp1109I	GCAGC	6 cut(s)	28, 31, 499, 655, 850, 1129
LweI	GCATC	2 cut(s)	1129, 1188
MaeI	CTAG	2 cut(s)	585, 876
MaeIII	GTNAC	2 cut(s)	722, 1159
MalI	GATC	5 cut(s)	431, 638, 654, 801, 1045
MbiI	CCGCTC	1 cut(s)	204
MboI	GATC	5 cut(s)	429, 636, 652, 799, 1043
MboII	GAAGA	8 cut(s)	69, 78, 81, 84, 439, 506, 757, 1019
MflI	RGATCY	1 cut(s)	799
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	7 cut(s)	474, 537, 578, 644, 842, 1093, 1210
MluNI	TGGCCA	1 cut(s)	23
MlyI	GAGTC	3 cut(s)	842, 897, 1019
Mox20I	TGGCCA	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	3 cut(s)	473, 611, 690
Msp20I	TGGCCA	1 cut(s)	23
MspI	CCGG	2 cut(s)	278, 1053
MspR9I	CCNGG	2 cut(s)	618, 728
Mva1269I	GAATGC	1 cut(s)	1068
MvaI	CCWGG	2 cut(s)	618, 728
MvnI	CGCG	3 cut(s)	152, 230, 860
MwoI	GCNNNNNNNGC	9 cut(s)	29, 38, 50, 59, 68, 160, 201, 872, 881
NcoI	CCATGG	1 cut(s)	1138
NdeI	CATATG	1 cut(s)	935
NdeII	GATC	5 cut(s)	429, 636, 652, 799, 1043
NlaIII	CATG	4 cut(s)	301, 436, 629, 1142
NlaIV	GGNNCC	5 cut(s)	167, 534, 714, 928, 995
NmeAIII	GCCGAG	1 cut(s)	191
NmuCI	GTSAC	2 cut(s)	722, 1159
PagI	TCATGA	1 cut(s)	432
PctI	GAATGC	1 cut(s)	1068
PfeI	GAWTC	4 cut(s)	114, 487, 941, 1203
PflMI	CCANNNNNTGG	1 cut(s)	936
PleI	GAGTC	3 cut(s)	842, 896, 1018
PpsI	GAGTC	3 cut(s)	842, 896, 1018
PshAI	GACNNNNGTC	1 cut(s)	32
PshBI	ATTAAT	1 cut(s)	473
Psp6I	CCWGG	2 cut(s)	616, 726
PspEI	GGTNACC	1 cut(s)	722
PspGI	CCWGG	2 cut(s)	616, 726
PspN4I	GGNNCC	5 cut(s)	167, 534, 714, 928, 995
PspPI	GGNCC	2 cut(s)	533, 982
PstI	CTGCAG	1 cut(s)	1119
PsuI	RGATCY	1 cut(s)	799
RsaI	GTAC	2 cut(s)	296, 1002
RsaNI	GTAC	2 cut(s)	295, 1001
SaqAI	TTAA	3 cut(s)	473, 611, 690
Sau3AI	GATC	5 cut(s)	429, 636, 652, 799, 1043
Sau96I	GGNCC	2 cut(s)	533, 982
SchI	GAGTC	3 cut(s)	842, 897, 1019
ScrFI	CCNGG	2 cut(s)	618, 728
SfaNI	GCATC	2 cut(s)	1129, 1188
SfcI	CTRYAG	1 cut(s)	1115
SinI	GGWCC	2 cut(s)	533, 982
Sse9I	AATT	7 cut(s)	474, 537, 578, 644, 842, 1093, 1210
SspMI	CTAG	2 cut(s)	585, 876
StyD4I	CCNGG	2 cut(s)	616, 726
StyI	CCWWGG	1 cut(s)	1138
TaaI	ACNGT	2 cut(s)	355, 392
TaqI	TCGA	4 cut(s)	112, 460, 635, 1206
TasI	AATT	7 cut(s)	474, 537, 578, 644, 842, 1093, 1210
TatI	WGTACW	2 cut(s)	294, 1000
TauI	GCSGC	5 cut(s)	65, 718, 863, 1110, 1179
TfiI	GAWTC	4 cut(s)	114, 487, 941, 1203
Tru1I	TTAA	3 cut(s)	473, 611, 690
Tru9I	TTAA	3 cut(s)	473, 611, 690
TscAI	CASTG	3 cut(s)	24, 682, 741
TseFI	GTSAC	2 cut(s)	722, 1159
TseI	GCWGC	6 cut(s)	41, 44, 512, 668, 863, 1117
Tsp45I	GTSAC	2 cut(s)	722, 1159
TspDTI	ATGAA	5 cut(s)	323, 375, 717, 843, 1027
TspGWI	ACGGA	4 cut(s)	168, 305, 674, 1161
TspRI	CASTG	3 cut(s)	24, 682, 741
Van91I	CCANNNNNTGG	1 cut(s)	936
VpaK11BI	GGWCC	2 cut(s)	533, 982
VspI	ATTAAT	1 cut(s)	473
XapI	RAATTY	1 cut(s)	644
XmiI	GTMKAC	1 cut(s)	381
XspI	CTAG	2 cut(s)	585, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.