Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019284.1

Orthogroup ID

OG0010364

Physical Location & Seq

Genomic Coordinates Forward (+)

9321 .. 11831

Gene Structure 2511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019284.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

atggcatttctgaggtcagtggccaccactagtgccatagctgcctctctattacccgccgccattgccctttcttcttcttcttcttcttcctctcagtctttccgattccctaaatcccaaaacatctcctttttctcctcctcctcctcccccccaaacccaaaacctctgttcctcgctgccatagctgcctctctattacccgccgccattgccctttcttcttcttcttcttcctctcaatctttccgattccctaaatcccaaaacatctcctttttctcctcctcctcctcccccccaaacccaaaacctctgttcctcgctacaagcctcaccagctctccctcagctctccacatggacgcgcccacatcggaacagaagccctcctttcagagtgatgctgtattgccagagctactgacagagtacatggtagacatgaaatgtgagagttgtgttaaggctgtcaagaataagttacaagttgttgatggggttaaaagtgtagaggcgaacctcgacacccaagttgttaggattctgggtgcaacccctctgaagaccatgactgaagctctcgagcagacaggtcgaaaagcgagattaattgggcaggggatcccagaagatttcttggtttccgctgctgtcgctgaatttaaaggtccagatgtttttggtgtggttcgatttgctcaggtgaatatggagttggctaggattgaagctagctttagtgggttatcacctgggaaacatggttggtccattaatgaatttggtgatttaacaaaaggtgctgctagcactggaaaagtatttaatccatctacagaaagtgtaaacgagccgcttggtgacctgggaacattggatactgatgagaatggcaatgctttcttctctggtgtcaaagagaagctgagagtttctgatcttattgggaggtcaatagcagtatatggaactgctgacaagtcagattcgggtgtcgcagctgctgtaatcgctagaagcgctggagtaggtgagaactacaagaagctttgcacttgtgatgggaccacgatatgggaatcaagtgacaaagactttgtcatgagcaaggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006878 GO:0008047 GO:0008150 GO:0008270 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016530 GO:0016531 GO:0016532 GO:0019725 GO:0030003 GO:0030234 GO:0042592 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050790 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0065009 GO:0098771 GO:0098772 GO:0140104

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

HMA Sod_Cu

Protein Analysis

373

Amino Acids

39.18

Weight (kDa)

6.22

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12520 AT1G12520 AT1G12520
fragaria_vesca	FvH4_5g01090
malus_domestica	MD00G1069800.v1.1 MD04G1072900.v1.1
prunus_persica	Prupe.5G084900_v2.0.a1 Prupe.5G084900_v2.0.a1
pyrus_communis	pycom04g06600 pycom06g06690
rosa_chinensis	RchiOBHm_Chr7g0200231
rosa_laevigata	RLG00000003742
rosa_multiflora	Rmu_sc0019284.1_g000001 Rmu_sc0025955.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256210
rosa_rugosa	Rorug07G0058600
rosa_samantha	Rh7AG184100 Rh7BG186800 Rh7CG194500 Rh7DG188200
rosa_wichuraiana	Rw7G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1080
AccI	GTMKAC	1 cut(s)	444
AccII	CGCG	1 cut(s)	371
AciI	CCGC	6 cut(s)	57, 60, 207, 210, 651, 860
AclWI	GGATC	2 cut(s)	622, 635
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	2 cut(s)	665, 785
AcuI	CTGAAG	2 cut(s)	587, 600
AfaI	GTAC	1 cut(s)	437
AfeI	AGCGCT	1 cut(s)	1027
AfiI	CCNNNNNNNGG	1 cut(s)	1080
AgsI	TTSAA	1 cut(s)	734
AhlI	ACTAGT	1 cut(s)	29
AjnI	CCWGG	2 cut(s)	757, 870
AjuI	GAANNNNNNNTTGG	2 cut(s)	704, 736
AlwI	GGATC	2 cut(s)	622, 635
AlwNI	CAGNNNCTG	1 cut(s)	1010
Ama87I	CYCGRG	1 cut(s)	587
Aor51HI	AGCGCT	1 cut(s)	1027
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	7 cut(s)	41, 182, 191, 653, 809, 1004, 1007
ApoI	RAATTY	2 cut(s)	665, 785
ArsI	GACNNNNNNTTYG	4 cut(s)	1085, 1089, 1117, 1121
AseI	ATTAAT	2 cut(s)	614, 780
AspLEI	GCGC	2 cut(s)	373, 1028
AspS9I	GGNCC	3 cut(s)	674, 774, 1071
AsuHPI	GGTGA	6 cut(s)	331, 721, 747, 803, 878, 1049
AsuNHI	GCTAGC	2 cut(s)	737, 812
AvaI	CYCGRG	1 cut(s)	587
AvaII	GGWCC	3 cut(s)	674, 774, 1071
BalI	TGGCCA	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	627
BbsI	GAAGAC	1 cut(s)	575
BbvCI	CCTCAGC	1 cut(s)	352
BbvI	GCAGC	7 cut(s)	28, 169, 178, 640, 796, 994, 1016
BccI	CCATC	3 cut(s)	494, 844, 1061
BcgI	CGANNNNNNTGC	2 cut(s)	581, 615
BciT130I	CCWGG	2 cut(s)	759, 872
BciVI	GTATCC	1 cut(s)	877
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	5 cut(s)	30, 726, 738, 813, 1020
BfmI	CTRYAG	1 cut(s)	840
BfoI	RGCGCY	1 cut(s)	1029
BfuI	GTATCC	1 cut(s)	877
Bme1390I	CCNGG	2 cut(s)	759, 872
Bme18I	GGWCC	3 cut(s)	674, 774, 1071
BmeT110I	CYCGRG	1 cut(s)	587
BmgT120I	GGNCC	3 cut(s)	674, 774, 1071
BmiI	GGNNCC	2 cut(s)	629, 1072
BmrFI	CCNGG	2 cut(s)	759, 872
BmsI	GCATC	1 cut(s)	397
BmtI	GCTAGC	2 cut(s)	741, 816
BpiI	GAAGAC	1 cut(s)	575
BpmI	CTGGAG	1 cut(s)	1050
Bpu10I	CCTNAGC	2 cut(s)	352, 705
BsaJI	CCNNGG	2 cut(s)	758, 871
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bsc4I	CCNNNNNNNGG	1 cut(s)	1080
Bse1I	ACTGG	1 cut(s)	823
Bse3DI	GCAATG	3 cut(s)	63, 213, 907
BseBI	CCWGG	2 cut(s)	759, 872
BseDI	CCNNGG	2 cut(s)	758, 871
BseLI	CCNNNNNNNGG	1 cut(s)	1080
BseMI	GCAATG	3 cut(s)	63, 213, 907
BseMII	CTCAG	4 cut(s)	110, 366, 719, 923
BseNI	ACTGG	1 cut(s)	823
BseRI	GAGGAG	8 cut(s)	130, 133, 136, 139, 277, 280, 283, 286
BseXI	GCAGC	7 cut(s)	28, 169, 178, 640, 796, 994, 1016
Bsh1236I	CGCG	1 cut(s)	371
BshFI	GGCC	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	587
BslFI	GGGAC	1 cut(s)	1084
BslI	CCNNNNNNNGG	1 cut(s)	1080
BsmFI	GGGAC	1 cut(s)	1084
BsnI	GGCC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	587
Bsp143I	GATC	2 cut(s)	627, 943
BspACI	CCGC	6 cut(s)	57, 60, 207, 210, 651, 860
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	4 cut(s)	109, 365, 718, 924
BspFNI	CGCG	1 cut(s)	371
BspHI	TCATGA	1 cut(s)	1107
BspLI	GGNNCC	2 cut(s)	629, 1072
BspOI	GCTAGC	2 cut(s)	741, 816
BspPI	GGATC	2 cut(s)	622, 635
BsrDI	GCAATG	3 cut(s)	63, 213, 907
BsrI	ACTGG	1 cut(s)	823
BssECI	CCNNGG	2 cut(s)	758, 871
BssMI	GATC	2 cut(s)	627, 943
Bst2UI	CCWGG	2 cut(s)	759, 872
BstC8I	GCNNGC	2 cut(s)	739, 814
BstDEI	CTNAG	5 cut(s)	11, 96, 352, 705, 932
BstEII	GGTNACC	1 cut(s)	866
BstFNI	CGCG	1 cut(s)	371
BstH2I	RGCGCY	1 cut(s)	1029
BstHHI	GCGC	2 cut(s)	373, 1028
BstKTI	GATC	2 cut(s)	630, 946
BstMBI	GATC	2 cut(s)	627, 943
BstMWI	GCNNNNNNNGC	9 cut(s)	41, 65, 188, 191, 215, 342, 659, 1016, 1025
BstNI	CCWGG	2 cut(s)	759, 872
BstPI	GGTNACC	1 cut(s)	866
BstSCI	CCNGG	2 cut(s)	757, 870
BstSFI	CTRYAG	1 cut(s)	840
BstUI	CGCG	1 cut(s)	371
BstV1I	GCAGC	7 cut(s)	28, 169, 178, 640, 796, 994, 1016
BstV2I	GAAGAC	1 cut(s)	575
BstX2I	RGATCY	1 cut(s)	627
BstYI	RGATCY	1 cut(s)	627
BsuI	GTATCC	1 cut(s)	877
BsuRI	GGCC	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	24, 816
Cac8I	GCNNGC	2 cut(s)	739, 814
CaiI	CAGNNNCTG	1 cut(s)	1010
CciI	TCATGA	1 cut(s)	1107
CfoI	GCGC	2 cut(s)	373, 1028
Cfr13I	GGNCC	3 cut(s)	674, 774, 1071
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	6 cut(s)	364, 439, 448, 574, 767, 1108
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	5 cut(s)	11, 96, 352, 705, 932
DpnI	GATC	2 cut(s)	629, 945
DpnII	GATC	2 cut(s)	627, 943
DraI	TTTAAA	1 cut(s)	670
EaeI	YGGCCR	1 cut(s)	21
Eco47I	GGWCC	3 cut(s)	674, 774, 1071
Eco47III	AGCGCT	1 cut(s)	1027
Eco57I	CTGAAG	2 cut(s)	587, 600
Eco88I	CYCGRG	1 cut(s)	587
Eco91I	GGTNACC	1 cut(s)	866
EcoO65I	GGTNACC	1 cut(s)	866
EcoRII	CCWGG	2 cut(s)	757, 870
FaeI	CATG	6 cut(s)	367, 442, 451, 577, 770, 1111
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
FaqI	GGGAC	1 cut(s)	1084
FatI	CATG	6 cut(s)	363, 438, 447, 573, 766, 1107
FauI	CCCGC	2 cut(s)	64, 214
FblI	GTMKAC	1 cut(s)	444
FspBI	CTAG	5 cut(s)	30, 726, 738, 813, 1020
GlaI	GCGC	2 cut(s)	372, 1027
GsuI	CTGGAG	1 cut(s)	1050
HaeII	RGCGCY	1 cut(s)	1029
HaeIII	GGCC	1 cut(s)	23
HgaI	GACGC	1 cut(s)	377
HhaI	GCGC	2 cut(s)	373, 1028
Hin1II	CATG	6 cut(s)	367, 442, 451, 577, 770, 1111
Hin6I	GCGC	2 cut(s)	371, 1026
HinP1I	GCGC	2 cut(s)	371, 1026
HindIII	AAGCTT	1 cut(s)	1052
HinfI	GANTC	5 cut(s)	108, 255, 547, 992, 1085
HphI	GGTGA	6 cut(s)	331, 721, 747, 803, 878, 1049
Hpy166II	GTNNAC	2 cut(s)	445, 853
Hpy188I	TCNGA	8 cut(s)	12, 107, 254, 382, 402, 567, 943, 991
Hpy188III	TCNNGA	4 cut(s)	478, 587, 677, 1108
Hpy8I	GTNNAC	2 cut(s)	445, 853
HpyCH4V	TGCA	2 cut(s)	557, 1059
HpyF10VI	GCNNNNNNNGC	9 cut(s)	41, 65, 188, 191, 215, 342, 659, 1016, 1025
HpyF3I	CTNAG	5 cut(s)	11, 96, 352, 705, 932
Hsp92II	CATG	6 cut(s)	367, 442, 451, 577, 770, 1111
HspAI	GCGC	2 cut(s)	371, 1026
Kzo9I	GATC	2 cut(s)	627, 943
Lsp1109I	GCAGC	7 cut(s)	28, 169, 178, 640, 796, 994, 1016
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	5 cut(s)	30, 726, 738, 813, 1020
MaeIII	GTNAC	3 cut(s)	486, 866, 1091
MalI	GATC	2 cut(s)	629, 945
MboI	GATC	2 cut(s)	627, 943
MflI	RGATCY	1 cut(s)	627
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	3 cut(s)	615, 665, 785
MluNI	TGGCCA	1 cut(s)	23
Mox20I	TGGCCA	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	8 cut(s)	468, 507, 614, 669, 780, 797, 831, 1120
Msp20I	TGGCCA	1 cut(s)	23
MspA1I	CMGCKG	2 cut(s)	653, 1007
MspR9I	CCNGG	2 cut(s)	759, 872
MvaI	CCWGG	2 cut(s)	759, 872
MvnI	CGCG	1 cut(s)	371
MwoI	GCNNNNNNNGC	9 cut(s)	41, 65, 188, 191, 215, 342, 659, 1016, 1025
NdeII	GATC	2 cut(s)	627, 943
NheI	GCTAGC	2 cut(s)	737, 812
NlaIII	CATG	6 cut(s)	367, 442, 451, 577, 770, 1111
NlaIV	GGNNCC	2 cut(s)	629, 1072
NmuCI	GTSAC	2 cut(s)	866, 1091
PaeR7I	CTCGAG	1 cut(s)	587
PagI	TCATGA	1 cut(s)	1107
PfeI	GAWTC	5 cut(s)	108, 255, 547, 992, 1085
PflFI	GACNNNGTC	1 cut(s)	1103
PflMI	CCANNNNNTGG	1 cut(s)	1080
PshBI	ATTAAT	2 cut(s)	614, 780
Psp6I	CCWGG	2 cut(s)	757, 870
PspEI	GGTNACC	1 cut(s)	866
PspGI	CCWGG	2 cut(s)	757, 870
PspN4I	GGNNCC	2 cut(s)	629, 1072
PspPI	GGNCC	3 cut(s)	674, 774, 1071
PsrI	GAACNNNNNNTAC	2 cut(s)	868, 900
PstNI	CAGNNNCTG	1 cut(s)	1010
PsuI	RGATCY	1 cut(s)	627
PsyI	GACNNNGTC	1 cut(s)	1103
PvuII	CAGCTG	1 cut(s)	1007
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
SaqAI	TTAA	8 cut(s)	468, 507, 614, 669, 780, 797, 831, 1120
Sau3AI	GATC	2 cut(s)	627, 943
Sau96I	GGNCC	3 cut(s)	674, 774, 1071
ScrFI	CCNGG	2 cut(s)	759, 872
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	840
Sfr274I	CTCGAG	1 cut(s)	587
SinI	GGWCC	3 cut(s)	674, 774, 1071
SlaI	CTCGAG	1 cut(s)	587
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
SpeI	ACTAGT	1 cut(s)	29
Sse9I	AATT	3 cut(s)	615, 665, 785
SsiI	CCGC	6 cut(s)	57, 60, 207, 210, 651, 860
SspMI	CTAG	5 cut(s)	30, 726, 738, 813, 1020
StyD4I	CCNGG	2 cut(s)	757, 870
TaqI	TCGA	4 cut(s)	528, 588, 601, 697
TasI	AATT	3 cut(s)	615, 665, 785
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	3 cut(s)	62, 212, 862
TfiI	GAWTC	5 cut(s)	108, 255, 547, 992, 1085
Tru1I	TTAA	8 cut(s)	468, 507, 614, 669, 780, 797, 831, 1120
Tru9I	TTAA	8 cut(s)	468, 507, 614, 669, 780, 797, 831, 1120
TscAI	CASTG	2 cut(s)	24, 823
TseFI	GTSAC	2 cut(s)	866, 1091
TseI	GCWGC	7 cut(s)	41, 182, 191, 653, 809, 1004, 1007
Tsp45I	GTSAC	2 cut(s)	866, 1091
TspDTI	ATGAA	2 cut(s)	464, 798
TspRI	CASTG	2 cut(s)	24, 823
Tth111I	GACNNNGTC	1 cut(s)	1103
Van91I	CCANNNNNTGG	1 cut(s)	1080
VpaK11BI	GGWCC	3 cut(s)	674, 774, 1071
VspI	ATTAAT	2 cut(s)	614, 780
XapI	RAATTY	2 cut(s)	665, 785
XhoI	CTCGAG	1 cut(s)	587
XmiI	GTMKAC	1 cut(s)	444
XspI	CTAG	5 cut(s)	30, 726, 738, 813, 1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.