Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010364

Physical Location & Seq

Genomic Coordinates Reverse (-)

9711160 .. 9713926

Gene Structure 2767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G084900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCTTTTCTGAGGTCAGTGGCTACGACAACTGCCATAGCTGCCTCTGCATTACCTGCGGCTTTTGCCCTTTCTTCACTCTCTTCGTCTTCCTCTTCCTCCCCATCTCAATCTTTTCGGTTCCTGAAAGCCCAAAACCTCTCCTTTCTCTCCTCCACACCATCTCTGAAACCAAATCGTTCCTGCCTCGCTACAAGCTTCACCAACTCGCCGTCAGCTATCCACATGGACGCGCCCACATCAGAACAAAAACCATCCCTTCAGAGCGATGCTGCCTTGCCAGAGCTGTTGACGGAGTACATGGTGGATATGAAATGCGAGGGTTGTGTTAACTCTGTCAAGAATAAGCTACAGACTGTTGATGGGGTCAAAAGTGTAGAGGTGGACCTTAACAGCCAAGTTGTTAGGATTCTAGGTTCAACGCCTGTGAAAACCATGACTGAAGTTTTGGAGCAGACCGGTCGAAAAGCGAGATTGATTGGGCAAGGGATCCCAGAAGATTTCTTGGTTTCTGCGGCTGTTGCTGAATTTAAAGGTCCAGATATTTTTGGTGTGGTTCGTTTGGCTCAGGTGAATATGGAATTGGCTAGGATTGAGGCCAACTTTAGTGGGCTGCCACCTGGAAAACATGGTTGGTCTATCAATGAGTTTGGTGATGTAACAGAAGGTGCTGCAAGCACTGGAAAAGTGTTTAATCCATCAAAGGAAGAAGCAAATGAGCCACTTGGCGACCTGGGAACATTGGATACTGATGAGAATGGTAATGCCTTCTTCTCCGGCATCAAAGAGAAGTTGAGAGTTGCTGATCTCATCGGGCGGTCATTAGTGGTATATGGTACTGCTGATAAGTCGGACTCTGGTATCAAAGCCGCGGTAATTGCTAGAAGTGCTGGAGTTGGTGAGAACTACAAAAAGCTTTGCACTTGTGATGGAACCACCATATGGGAAGCAACTGGCAACGACTTCGTCACCAGCAAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006878 GO:0008047 GO:0008150 GO:0008270 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016530 GO:0016531 GO:0016532 GO:0019725 GO:0030003 GO:0030234 GO:0042592 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050790 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0065009 GO:0098771 GO:0098772 GO:0140104

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

HMA Sod_Cu

Protein Analysis

328

Amino Acids

34.51

Weight (kDa)

5.3

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12520 AT1G12520 AT1G12520
fragaria_vesca	FvH4_5g01090
malus_domestica	MD00G1069800.v1.1 MD04G1072900.v1.1
prunus_persica	Prupe.5G084900_v2.0.a1 Prupe.5G084900_v2.0.a1
pyrus_communis	pycom04g06600 pycom06g06690
rosa_chinensis	RchiOBHm_Chr7g0200231
rosa_laevigata	RLG00000003742
rosa_multiflora	Rmu_sc0019284.1_g000001 Rmu_sc0025955.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256210
rosa_rugosa	Rorug07G0058600
rosa_samantha	Rh7AG184100 Rh7BG186800 Rh7CG194500 Rh7DG188200
rosa_wichuraiana	Rw7G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	64
AccB7I	CCANNNNNTGG	1 cut(s)	942
AccII	CGCG	2 cut(s)	233, 872
AciI	CCGC	5 cut(s)	59, 515, 817, 870, 872
AclWI	GGATC	2 cut(s)	484, 497
AcsI	RAATTY	1 cut(s)	527
AcuI	CTGAAG	2 cut(s)	245, 462
AfaI	GTAC	2 cut(s)	299, 838
AfiI	CCNNNNNNNGG	1 cut(s)	942
AgeI	ACCGGT	1 cut(s)	458
AgsI	TTSAA	1 cut(s)	420
AjnI	CCWGG	2 cut(s)	619, 732
AjuI	GAANNNNNNNTTGG	4 cut(s)	566, 598, 616, 648
AloI	GAACNNNNNNTCC	2 cut(s)	400, 432
AluBI	AGCT	6 cut(s)	41, 198, 218, 286, 349, 916
AluI	AGCT	6 cut(s)	41, 198, 218, 286, 349, 916
AlwI	GGATC	2 cut(s)	484, 497
AoxI	GGCC	1 cut(s)	597
ApeKI	GCWGC	4 cut(s)	41, 272, 613, 671
ApoI	RAATTY	1 cut(s)	527
ArsI	GACNNNNNNTTYG	2 cut(s)	430, 462
AsiGI	ACCGGT	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	235
AspS9I	GGNCC	2 cut(s)	385, 536
AsuHPI	GGTGA	5 cut(s)	193, 583, 665, 911, 961
AvaII	GGWCC	2 cut(s)	385, 536
BaeI	ACNNNNGTAYC	2 cut(s)	844, 877
BamHI	GGATCC	1 cut(s)	489
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	4 cut(s)	28, 259, 600, 658
BccI	CCATC	6 cut(s)	112, 169, 262, 356, 706, 923
BceAI	ACGGC	1 cut(s)	196
BcgI	CGANNNNNNTGC	4 cut(s)	443, 477, 946, 980
BciT130I	CCWGG	2 cut(s)	621, 734
BciVI	GTATCC	1 cut(s)	739
BfaI	CTAG	3 cut(s)	413, 588, 882
BfmI	CTRYAG	1 cut(s)	350
BfuAI	ACCTGC	1 cut(s)	64
BfuI	GTATCC	1 cut(s)	739
BisI	GCNGC	7 cut(s)	42, 60, 273, 516, 614, 672, 870
BlsI	GCNGC	7 cut(s)	43, 61, 274, 517, 615, 673, 871
Bme1390I	CCNGG	2 cut(s)	621, 734
Bme18I	GGWCC	2 cut(s)	385, 536
BmgT120I	GGNCC	2 cut(s)	385, 536
BmiI	GGNNCC	3 cut(s)	122, 491, 934
BmrFI	CCNGG	2 cut(s)	621, 734
BmsI	GCATC	2 cut(s)	259, 789
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	912
Bpu10I	CCTNAGC	1 cut(s)	567
BsaJI	CCNNGG	2 cut(s)	733, 870
BsaWI	WCCGGW	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	1 cut(s)	942
Bse118I	RCCGGY	1 cut(s)	458
Bse1I	ACTGG	2 cut(s)	685, 958
BseBI	CCWGG	2 cut(s)	621, 734
BseDI	CCNNGG	2 cut(s)	733, 870
BseGI	GGATG	1 cut(s)	254
BseLI	CCNNNNNNNGG	1 cut(s)	942
BseMII	CTCAG	1 cut(s)	581
BseNI	ACTGG	2 cut(s)	685, 958
BseRI	GAGGAG	1 cut(s)	142
BseXI	GCAGC	4 cut(s)	28, 259, 600, 658
Bsh1236I	CGCG	2 cut(s)	233, 872
Bsh1285I	CGRYCG	1 cut(s)	463
BshFI	GGCC	1 cut(s)	599
BshTI	ACCGGT	1 cut(s)	458
BsiEI	CGRYCG	1 cut(s)	463
BsiSI	CCGG	2 cut(s)	459, 777
BslI	CCNNNNNNNGG	1 cut(s)	942
BsnI	GGCC	1 cut(s)	599
Bsp143I	GATC	2 cut(s)	489, 805
BspACI	CCGC	5 cut(s)	59, 515, 817, 870, 872
BspANI	GGCC	1 cut(s)	599
BspCNI	CTCAG	1 cut(s)	580
BspFNI	CGCG	2 cut(s)	233, 872
BspLI	GGNNCC	3 cut(s)	122, 491, 934
BspMI	ACCTGC	1 cut(s)	64
BspPI	GGATC	2 cut(s)	484, 497
BsrFI	RCCGGY	1 cut(s)	458
BsrI	ACTGG	2 cut(s)	685, 958
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	2 cut(s)	733, 870
BssMI	GATC	2 cut(s)	489, 805
Bst2UI	CCWGG	2 cut(s)	621, 734
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	2 cut(s)	88, 100
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	676
BstDEI	CTNAG	2 cut(s)	11, 567
BstDSI	CCRYGG	1 cut(s)	870
BstF5I	GGATG	1 cut(s)	254
BstFNI	CGCG	2 cut(s)	233, 872
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	2 cut(s)	492, 808
BstMBI	GATC	2 cut(s)	489, 805
BstMCI	CGRYCG	1 cut(s)	463
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 47, 56, 65, 521, 878, 887
BstNI	CCWGG	2 cut(s)	621, 734
BstSCI	CCNGG	2 cut(s)	619, 732
BstSFI	CTRYAG	1 cut(s)	350
BstUI	CGCG	2 cut(s)	233, 872
BstV1I	GCAGC	4 cut(s)	28, 259, 600, 658
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	489
BstYI	RGATCY	1 cut(s)	489
BsuI	GTATCC	1 cut(s)	739
BsuRI	GGCC	1 cut(s)	599
BtgI	CCRYGG	1 cut(s)	870
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	254
BtsIMutI	CAGTG	2 cut(s)	24, 678
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	676
CfoI	GCGC	1 cut(s)	235
Cfr10I	RCCGGY	1 cut(s)	458
Cfr13I	GGNCC	2 cut(s)	385, 536
Cfr42I	CCGCGG	1 cut(s)	873
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	2 cut(s)	298, 837
CspAI	ACCGGT	1 cut(s)	458
CspCI	CAANNNNNGTGG	2 cut(s)	589, 624
CviAII	CATG	4 cut(s)	226, 301, 436, 629
CviQI	GTAC	2 cut(s)	298, 837
DdeI	CTNAG	2 cut(s)	11, 567
DpnI	GATC	2 cut(s)	491, 807
DpnII	GATC	2 cut(s)	489, 805
DraI	TTTAAA	1 cut(s)	532
Eam1104I	CTCTTC	2 cut(s)	88, 100
EarI	CTCTTC	2 cut(s)	88, 100
Eco47I	GGWCC	2 cut(s)	385, 536
Eco57I	CTGAAG	2 cut(s)	245, 462
EcoRII	CCWGG	2 cut(s)	619, 732
FaeI	CATG	4 cut(s)	229, 304, 439, 632
FatI	CATG	4 cut(s)	225, 300, 435, 628
FauNDI	CATATG	1 cut(s)	941
Fnu4HI	GCNGC	7 cut(s)	42, 60, 273, 516, 614, 672, 870
FokI	GGATG	1 cut(s)	241
Fsp4HI	GCNGC	7 cut(s)	42, 60, 273, 516, 614, 672, 870
FspBI	CTAG	3 cut(s)	413, 588, 882
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	7 cut(s)	42, 60, 273, 516, 614, 672, 870
GsuI	CTGGAG	1 cut(s)	912
HaeIII	GGCC	1 cut(s)	599
HapII	CCGG	2 cut(s)	459, 777
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	4 cut(s)	229, 304, 439, 632
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HincII	GTYRAC	2 cut(s)	291, 331
HindII	GTYRAC	2 cut(s)	291, 331
HindIII	AAGCTT	2 cut(s)	196, 914
HinfI	GANTC	2 cut(s)	409, 854
HpaI	GTTAAC	1 cut(s)	331
HpaII	CCGG	2 cut(s)	459, 777
HphI	GGTGA	5 cut(s)	193, 583, 665, 911, 961
Hpy166II	GTNNAC	3 cut(s)	291, 331, 385
Hpy188I	TCNGA	6 cut(s)	12, 168, 244, 264, 853, 983
Hpy188III	TCNNGA	3 cut(s)	124, 340, 539
Hpy8I	GTNNAC	3 cut(s)	291, 331, 385
HpyAV	CCTTC	3 cut(s)	269, 659, 778
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4V	TGCA	3 cut(s)	50, 674, 921
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 47, 56, 65, 521, 878, 887
HpyF3I	CTNAG	2 cut(s)	11, 567
Hsp92II	CATG	4 cut(s)	229, 304, 439, 632
HspAI	GCGC	1 cut(s)	233
KspAI	GTTAAC	1 cut(s)	331
KspI	CCGCGG	1 cut(s)	873
Kzo9I	GATC	2 cut(s)	489, 805
LmnI	GCTCC	1 cut(s)	451
Lsp1109I	GCAGC	4 cut(s)	28, 259, 600, 658
LweI	GCATC	2 cut(s)	259, 789
MaeI	CTAG	3 cut(s)	413, 588, 882
MaeIII	GTNAC	2 cut(s)	658, 967
MalI	GATC	2 cut(s)	491, 807
MboI	GATC	2 cut(s)	489, 805
MboII	GAAGA	7 cut(s)	66, 75, 81, 87, 509, 719, 763
MflI	RGATCY	1 cut(s)	489
MluCI	AATT	3 cut(s)	527, 581, 876
MlyI	GAGTC	1 cut(s)	848
MmeI	TCCRAC	1 cut(s)	831
MseI	TTAA	4 cut(s)	330, 390, 531, 693
MspA1I	CMGCKG	1 cut(s)	872
MspI	CCGG	2 cut(s)	459, 777
MspR9I	CCNGG	2 cut(s)	621, 734
MvaI	CCWGG	2 cut(s)	621, 734
MvnI	CGCG	2 cut(s)	233, 872
MwoI	GCNNNNNNNGC	7 cut(s)	41, 47, 56, 65, 521, 878, 887
NdeI	CATATG	1 cut(s)	941
NdeII	GATC	2 cut(s)	489, 805
NlaIII	CATG	4 cut(s)	229, 304, 439, 632
NlaIV	GGNNCC	3 cut(s)	122, 491, 934
NmuCI	GTSAC	1 cut(s)	967
PfeI	GAWTC	1 cut(s)	409
PflFI	GACNNNGTC	1 cut(s)	965
PflMI	CCANNNNNTGG	1 cut(s)	942
PinAI	ACCGGT	1 cut(s)	458
PkrI	GCNGC	7 cut(s)	43, 61, 274, 517, 615, 673, 871
PleI	GAGTC	1 cut(s)	848
PpsI	GAGTC	1 cut(s)	848
Psp6I	CCWGG	2 cut(s)	619, 732
PspGI	CCWGG	2 cut(s)	619, 732
PspN4I	GGNNCC	3 cut(s)	122, 491, 934
PspPI	GGNCC	2 cut(s)	385, 536
PsrI	GAACNNNNNNTAC	2 cut(s)	730, 762
PsuI	RGATCY	1 cut(s)	489
PsyI	GACNNNGTC	1 cut(s)	965
RsaI	GTAC	2 cut(s)	299, 838
RsaNI	GTAC	2 cut(s)	298, 837
SacII	CCGCGG	1 cut(s)	873
SaqAI	TTAA	4 cut(s)	330, 390, 531, 693
SatI	GCNGC	7 cut(s)	42, 60, 273, 516, 614, 672, 870
Sau3AI	GATC	2 cut(s)	489, 805
Sau96I	GGNCC	2 cut(s)	385, 536
SchI	GAGTC	1 cut(s)	848
ScrFI	CCNGG	2 cut(s)	621, 734
SfaNI	GCATC	2 cut(s)	259, 789
SfcI	CTRYAG	1 cut(s)	350
Sfr303I	CCGCGG	1 cut(s)	873
SgrBI	CCGCGG	1 cut(s)	873
SinI	GGWCC	2 cut(s)	385, 536
Sse9I	AATT	3 cut(s)	527, 581, 876
SsiI	CCGC	5 cut(s)	59, 515, 817, 870, 872
SspMI	CTAG	3 cut(s)	413, 588, 882
StyD4I	CCNGG	2 cut(s)	619, 732
TaaI	ACNGT	1 cut(s)	358
TaqI	TCGA	1 cut(s)	463
TasI	AATT	3 cut(s)	527, 581, 876
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	3 cut(s)	62, 518, 872
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	4 cut(s)	330, 390, 531, 693
Tru9I	TTAA	4 cut(s)	330, 390, 531, 693
TscAI	CASTG	2 cut(s)	24, 685
TseFI	GTSAC	1 cut(s)	967
TseI	GCWGC	4 cut(s)	41, 272, 613, 671
Tsp45I	GTSAC	1 cut(s)	967
TspDTI	ATGAA	1 cut(s)	326
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	2 cut(s)	24, 685
Tth111I	GACNNNGTC	1 cut(s)	965
Van91I	CCANNNNNTGG	1 cut(s)	942
VpaK11BI	GGWCC	2 cut(s)	385, 536
XapI	RAATTY	1 cut(s)	527
XspI	CTAG	3 cut(s)	413, 588, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.