Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025955.1

Orthogroup ID

OG0010364

Physical Location & Seq

Genomic Coordinates Reverse (-)

1176 .. 1457

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025955.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atgctggattattttcagccgcttggtgacctgggaacattggatactgatgagaatggcaatgctttcttctctggtgtcaaagagaagctgagagtttctgatcttattgggaggtcaatagcagtatatggaactgctgacaagtcagattcgggtgtcgcagctgctgtaatcgctagaagcgctggagtaggtgagaactacaagaagctttgcacttgtgatgggaccacgatatgggaatcaagtgacaaagactttgtcatgagcaaggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006878 GO:0008047 GO:0008150 GO:0008270 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016530 GO:0016531 GO:0016532 GO:0019725 GO:0030003 GO:0030234 GO:0042592 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050790 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0065009 GO:0098771 GO:0098772 GO:0140104

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

HMA Sod_Cu

Protein Analysis

93

Amino Acids

9.92

Weight (kDa)

4.59

Isoelectric Point (pI)

23.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12520 AT1G12520 AT1G12520
fragaria_vesca	FvH4_5g01090
malus_domestica	MD00G1069800.v1.1 MD04G1072900.v1.1
prunus_persica	Prupe.5G084900_v2.0.a1 Prupe.5G084900_v2.0.a1
pyrus_communis	pycom04g06600 pycom06g06690
rosa_chinensis	RchiOBHm_Chr7g0200231
rosa_laevigata	RLG00000003742
rosa_multiflora	Rmu_sc0019284.1_g000001 Rmu_sc0025955.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256210
rosa_rugosa	Rorug07G0058600
rosa_samantha	Rh7AG184100 Rh7BG186800 Rh7CG194500 Rh7DG188200
rosa_wichuraiana	Rw7G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	240
AciI	CCGC	1 cut(s)	20
AfeI	AGCGCT	1 cut(s)	187
AfiI	CCNNNNNNNGG	1 cut(s)	240
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	3 cut(s)	91, 167, 214
AluI	AGCT	3 cut(s)	91, 167, 214
AlwNI	CAGNNNCTG	1 cut(s)	170
Aor51HI	AGCGCT	1 cut(s)	187
ApeKI	GCWGC	2 cut(s)	164, 167
ArsI	GACNNNNNNTTYG	4 cut(s)	245, 249, 277, 281
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	231
AsuHPI	GGTGA	2 cut(s)	38, 209
AvaII	GGWCC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	154, 176
BccI	CCATC	1 cut(s)	221
BciT130I	CCWGG	1 cut(s)	32
BciVI	GTATCC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	189
BfuI	GTATCC	1 cut(s)	37
BisI	GCNGC	3 cut(s)	20, 165, 168
BlsI	GCNGC	3 cut(s)	21, 166, 169
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse3DI	GCAATG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	31
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMI	GCAATG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	83
BseXI	GCAGC	2 cut(s)	154, 176
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	32
BstDEI	CTNAG	1 cut(s)	92
BstEII	GGTNACC	1 cut(s)	26
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 185
BstNI	CCWGG	1 cut(s)	32
BstPI	GGTNACC	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	154, 176
BsuI	GTATCC	1 cut(s)	37
CaiI	CAGNNNCTG	1 cut(s)	170
CciI	TCATGA	1 cut(s)	267
CfoI	GCGC	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	231
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	4 cut(s)	19, 91, 167, 214
CviKI_1	RGCY	4 cut(s)	19, 91, 167, 214
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	231
Eco47III	AGCGCT	1 cut(s)	187
Eco91I	GGTNACC	1 cut(s)	26
EcoO65I	GGTNACC	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	30
FaeI	CATG	1 cut(s)	271
FaiI	YATR	4 cut(s)	130, 132, 241, 269
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	1 cut(s)	267
Fnu4HI	GCNGC	3 cut(s)	20, 165, 168
Fsp4HI	GCNGC	3 cut(s)	20, 165, 168
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	3 cut(s)	20, 165, 168
GsuI	CTGGAG	1 cut(s)	210
HaeII	RGCGCY	1 cut(s)	189
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	1 cut(s)	271
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	2 cut(s)	152, 245
HphI	GGTGA	2 cut(s)	38, 209
Hpy188I	TCNGA	2 cut(s)	103, 151
Hpy188III	TCNNGA	1 cut(s)	268
HpyCH4V	TGCA	1 cut(s)	219
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 185
HpyF3I	CTNAG	1 cut(s)	92
Hsp92II	CATG	1 cut(s)	271
HspAI	GCGC	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	4 cut(s)	17, 44, 60, 174
Lsp1109I	GCAGC	2 cut(s)	154, 176
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	26, 251
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	1 cut(s)	61
MnlI	CCTC	1 cut(s)	108
MseI	TTAA	1 cut(s)	280
MspA1I	CMGCKG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	176, 185
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	1 cut(s)	232
NmuCI	GTSAC	2 cut(s)	26, 251
PagI	TCATGA	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	152, 245
PflFI	GACNNNGTC	1 cut(s)	263
PflMI	CCANNNNNTGG	1 cut(s)	240
PkrI	GCNGC	3 cut(s)	21, 166, 169
Psp6I	CCWGG	1 cut(s)	30
PspEI	GGTNACC	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	1 cut(s)	231
PsrI	GAACNNNNNNTAC	2 cut(s)	28, 60
PstNI	CAGNNNCTG	1 cut(s)	170
PsyI	GACNNNGTC	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	280
SatI	GCNGC	3 cut(s)	20, 165, 168
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	1 cut(s)	231
ScrFI	CCNGG	1 cut(s)	32
SetI	ASST	7 cut(s)	33, 93, 119, 169, 199, 216, 279
SinI	GGWCC	1 cut(s)	231
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	30
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	2 cut(s)	152, 245
Tru1I	TTAA	1 cut(s)	280
Tru9I	TTAA	1 cut(s)	280
TseFI	GTSAC	2 cut(s)	26, 251
TseI	GCWGC	2 cut(s)	164, 167
Tsp45I	GTSAC	2 cut(s)	26, 251
Tth111I	GACNNNGTC	1 cut(s)	263
Van91I	CCANNNNNTGG	1 cut(s)	240
VpaK11BI	GGWCC	1 cut(s)	231
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.