Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0010364

Physical Location & Seq

Genomic Coordinates Reverse (-)

4214523 .. 4215239

Gene Structure 717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0058600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGTGTCGACAAATCGGCACATAATTGACAAATCGTTAGTGGCTCCATTTAAATCCAGGCAAGAGCATCGCAAGAACATTGAATTGGAAGAAGCGCGTAAGGCTGGGCTTGTACCTGCTGAAGTCGATAAGAATGGAAAGGAGATCAATCCTCATATACCCAAATATGTGGCTGATACACCTTGGTATATCAAAACCGAGGAGGGACCTAGTCTAGAGCATCAAAGAAAGCCCGAATCAAATGTGAATGGCAAGAAGAAATCACAGTATGACAGAGGTGCAAAGCTATTCCAGGCCCTTACATATAGGAAGGGTGCATGTACGAACTGTGGATCCATGAAACATGATGCCAAGTCATGTAGCGAAAGACCGAGGAAAGTTGGAGCAAAATGGACTGGCAAGTACATTGCTCCGGATGAGATGATAGAGACTCTTGGACTTCTCAGCTATGATGAAAAACGGGACCGGTGGAATGGATATAATCCATCAATCTATGCCCATGTTATTAAGAGATATGAATTACAACAGGAAGCTCGAAACAAATACTTAAAGGAAGAACGAATCAAGAAATTAGAAGATGAGACTGATGATATCAGGGTAGATGAAGCCAAGGCTGATGAGAGCAAGCAAACAGACTTCGCAAAGGTCGAGAAGCGTGTGCGCACAACGGGTGGTGGCCGGAAGCACTGGAACTGTCAGAAACTTGCGTATTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006878 GO:0008047 GO:0008150 GO:0008270 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016530 GO:0016531 GO:0016532 GO:0019725 GO:0030003 GO:0030234 GO:0042592 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050790 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0065009 GO:0098771 GO:0098772 GO:0140104

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

HMA Sod_Cu

Protein Analysis

238

Amino Acids

27.55

Weight (kDa)

9.38

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Slu7	PF11708	148 - 215	2.1e-11	Pre-mRNA splicing Prp18-interacting factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12520 AT1G12520 AT1G12520
fragaria_vesca	FvH4_5g01090
malus_domestica	MD00G1069800.v1.1 MD04G1072900.v1.1
prunus_persica	Prupe.5G084900_v2.0.a1 Prupe.5G084900_v2.0.a1
pyrus_communis	pycom04g06600 pycom06g06690
rosa_chinensis	RchiOBHm_Chr7g0200231
rosa_laevigata	RLG00000003742
rosa_multiflora	Rmu_sc0019284.1_g000001 Rmu_sc0025955.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256210
rosa_rugosa	Rorug07G0058600
rosa_samantha	Rh7AG184100 Rh7BG186800 Rh7CG194500 Rh7DG188200
rosa_wichuraiana	Rw7G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	662
Acc36I	ACCTGC	1 cut(s)	124
AccI	GTMKAC	1 cut(s)	8
AccII	CGCG	1 cut(s)	97
AccIII	TCCGGA	1 cut(s)	412
AclWI	GGATC	2 cut(s)	327, 340
AcoI	YGGCCR	1 cut(s)	676
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	3 cut(s)	114, 322, 404
AgeI	ACCGGT	1 cut(s)	465
AgsI	TTSAA	1 cut(s)	83
AjnI	CCWGG	2 cut(s)	56, 291
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AloI	GAACNNNNNNTCC	2 cut(s)	317, 349
AluBI	AGCT	3 cut(s)	286, 447, 533
AluI	AGCT	3 cut(s)	286, 447, 533
Alw26I	GTCTC	2 cut(s)	422, 575
AlwI	GGATC	2 cut(s)	327, 340
Aor13HI	TCCGGA	1 cut(s)	412
AoxI	GGCC	2 cut(s)	294, 676
AsiGI	ACCGGT	1 cut(s)	465
AspLEI	GCGC	2 cut(s)	97, 663
AspS9I	GGNCC	3 cut(s)	206, 295, 463
AvaII	GGWCC	2 cut(s)	206, 463
BamHI	GGATCC	1 cut(s)	332
BccI	CCATC	1 cut(s)	493
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BciT130I	CCWGG	2 cut(s)	58, 293
BcoDI	GTCTC	2 cut(s)	422, 575
BfaI	CTAG	2 cut(s)	210, 215
BfuAI	ACCTGC	1 cut(s)	124
Bme1390I	CCNGG	2 cut(s)	58, 293
Bme18I	GGWCC	2 cut(s)	206, 463
BmgT120I	GGNCC	3 cut(s)	206, 295, 463
BmiI	GGNNCC	4 cut(s)	45, 207, 334, 464
BmrFI	CCNGG	2 cut(s)	58, 293
BmsI	GCATC	3 cut(s)	76, 229, 337
BsaJI	CCNNGG	4 cut(s)	182, 198, 371, 609
BsaWI	WCCGGW	2 cut(s)	412, 465
Bse118I	RCCGGY	1 cut(s)	465
Bse1I	ACTGG	2 cut(s)	400, 692
Bse3DI	GCAATG	1 cut(s)	405
BseAI	TCCGGA	1 cut(s)	412
BseBI	CCWGG	2 cut(s)	58, 293
BseDI	CCNNGG	4 cut(s)	182, 198, 371, 609
BseGI	GGATG	1 cut(s)	421
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	1 cut(s)	457
BseNI	ACTGG	2 cut(s)	400, 692
BseRI	GAGGAG	1 cut(s)	215
BseYI	CCCAGC	1 cut(s)	104
Bsh1236I	CGCG	1 cut(s)	97
BshFI	GGCC	2 cut(s)	296, 678
BshTI	ACCGGT	1 cut(s)	465
BsiSI	CCGG	3 cut(s)	413, 466, 679
BslFI	GGGAC	2 cut(s)	219, 476
BsmAI	GTCTC	2 cut(s)	422, 575
BsmFI	GGGAC	2 cut(s)	219, 476
BsnI	GGCC	2 cut(s)	296, 678
Bsp13I	TCCGGA	1 cut(s)	412
Bsp143I	GATC	2 cut(s)	144, 332
BspANI	GGCC	2 cut(s)	296, 678
BspCNI	CTCAG	1 cut(s)	456
BspEI	TCCGGA	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	97
BspLI	GGNNCC	4 cut(s)	45, 207, 334, 464
BspMI	ACCTGC	1 cut(s)	124
BspPI	GGATC	2 cut(s)	327, 340
BsrDI	GCAATG	1 cut(s)	405
BsrFI	RCCGGY	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	400, 692
BssAI	RCCGGY	1 cut(s)	465
BssECI	CCNNGG	4 cut(s)	182, 198, 371, 609
BssMI	GATC	2 cut(s)	144, 332
BssT1I	CCWWGG	2 cut(s)	182, 609
Bst2UI	CCWGG	2 cut(s)	58, 293
Bst4CI	ACNGT	3 cut(s)	267, 329, 695
BstC8I	GCNNGC	1 cut(s)	626
BstDEI	CTNAG	1 cut(s)	443
BstF5I	GGATG	1 cut(s)	421
BstFNI	CGCG	1 cut(s)	97
BstHHI	GCGC	2 cut(s)	97, 663
BstKTI	GATC	2 cut(s)	147, 335
BstMAI	GTCTC	2 cut(s)	422, 575
BstMBI	GATC	2 cut(s)	144, 332
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNI	CCWGG	2 cut(s)	58, 293
BstNSI	RCATGY	1 cut(s)	321
BstSCI	CCNGG	2 cut(s)	56, 291
BstUI	CGCG	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	332
BstXI	CCANNNNNNTGG	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	332
BsuRI	GGCC	2 cut(s)	296, 678
BtgZI	GCGATG	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	685
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	626
CfoI	GCGC	2 cut(s)	97, 663
Cfr10I	RCCGGY	1 cut(s)	465
Cfr13I	GGNCC	3 cut(s)	206, 295, 463
Csp6I	GTAC	3 cut(s)	113, 321, 403
CspAI	ACCGGT	1 cut(s)	465
CviAII	CATG	5 cut(s)	318, 337, 344, 357, 500
CviQI	GTAC	3 cut(s)	113, 321, 403
DdeI	CTNAG	1 cut(s)	443
DpnI	GATC	2 cut(s)	146, 334
DpnII	GATC	2 cut(s)	144, 332
DraI	TTTAAA	1 cut(s)	52
EaeI	YGGCCR	1 cut(s)	676
Eco130I	CCWWGG	2 cut(s)	182, 609
Eco32I	GATATC	1 cut(s)	592
Eco47I	GGWCC	2 cut(s)	206, 463
Eco57I	CTGAAG	1 cut(s)	141
EcoO109I	RGGNCCY	2 cut(s)	206, 295
EcoRII	CCWGG	2 cut(s)	56, 291
EcoRV	GATATC	1 cut(s)	592
EcoT14I	CCWWGG	2 cut(s)	182, 609
ErhI	CCWWGG	2 cut(s)	182, 609
FaeI	CATG	5 cut(s)	321, 340, 347, 360, 503
FaqI	GGGAC	2 cut(s)	219, 476
FatI	CATG	5 cut(s)	317, 336, 343, 356, 499
FblI	GTMKAC	1 cut(s)	8
FokI	GGATG	1 cut(s)	428
FspAI	RTGCGCAY	1 cut(s)	662
FspBI	CTAG	2 cut(s)	210, 215
FspI	TGCGCA	1 cut(s)	662
GlaI	GCGC	2 cut(s)	96, 662
GsaI	CCCAGC	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	296, 678
HapII	CCGG	3 cut(s)	413, 466, 679
HhaI	GCGC	2 cut(s)	97, 663
Hin1II	CATG	5 cut(s)	321, 340, 347, 360, 503
Hin6I	GCGC	2 cut(s)	95, 661
HinP1I	GCGC	2 cut(s)	95, 661
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	3 cut(s)	236, 430, 561
HpaII	CCGG	3 cut(s)	413, 466, 679
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	1 cut(s)	699
Hpy188III	TCNNGA	5 cut(s)	215, 413, 565, 649, 714
Hpy8I	GTNNAC	1 cut(s)	9
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	3 cut(s)	267, 329, 695
HpyCH4V	TGCA	2 cut(s)	281, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	1 cut(s)	443
Hsp92II	CATG	5 cut(s)	321, 340, 347, 360, 503
HspAI	GCGC	2 cut(s)	95, 661
Kpn2I	TCCGGA	1 cut(s)	412
Kzo9I	GATC	2 cut(s)	144, 332
LmnI	GCTCC	3 cut(s)	49, 383, 415
LweI	GCATC	3 cut(s)	76, 229, 337
MaeI	CTAG	2 cut(s)	210, 215
MalI	GATC	2 cut(s)	146, 334
MboI	GATC	2 cut(s)	144, 332
MboII	GAAGA	4 cut(s)	101, 268, 566, 587
MflI	RGATCY	1 cut(s)	332
MluCI	AATT	4 cut(s)	24, 83, 518, 569
MlyI	GAGTC	1 cut(s)	424
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	5 cut(s)	162, 193, 196, 269, 366
MroI	TCCGGA	1 cut(s)	412
MseI	TTAA	3 cut(s)	51, 507, 548
MspI	CCGG	3 cut(s)	413, 466, 679
MspR9I	CCNGG	2 cut(s)	58, 293
MvaI	CCWGG	2 cut(s)	58, 293
MvnI	CGCG	1 cut(s)	97
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeII	GATC	2 cut(s)	144, 332
NlaIII	CATG	5 cut(s)	321, 340, 347, 360, 503
NlaIV	GGNNCC	4 cut(s)	45, 207, 334, 464
NsbI	TGCGCA	1 cut(s)	662
NspI	RCATGY	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	1 cut(s)	645
PfeI	GAWTC	2 cut(s)	236, 561
PflFI	GACNNNGTC	1 cut(s)	210
PinAI	ACCGGT	1 cut(s)	465
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PpuMI	RGGWCCY	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	206
Psp6I	CCWGG	2 cut(s)	56, 291
PspFI	CCCAGC	1 cut(s)	104
PspGI	CCWGG	2 cut(s)	56, 291
PspN4I	GGNNCC	4 cut(s)	45, 207, 334, 464
PspPI	GGNCC	3 cut(s)	206, 295, 463
PspPPI	RGGWCCY	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	332
PsyI	GACNNNGTC	1 cut(s)	210
RsaI	GTAC	3 cut(s)	114, 322, 404
RsaNI	GTAC	3 cut(s)	113, 321, 403
SalI	GTCGAC	1 cut(s)	7
SaqAI	TTAA	3 cut(s)	51, 507, 548
Sau3AI	GATC	2 cut(s)	144, 332
Sau96I	GGNCC	3 cut(s)	206, 295, 463
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	2 cut(s)	58, 293
SetI	ASST	8 cut(s)	118, 184, 211, 280, 288, 449, 535, 648
SfaNI	GCATC	3 cut(s)	76, 229, 337
SinI	GGWCC	2 cut(s)	206, 463
SmiI	ATTTAAAT	1 cut(s)	52
Sse9I	AATT	4 cut(s)	24, 83, 518, 569
SspMI	CTAG	2 cut(s)	210, 215
StyD4I	CCNGG	2 cut(s)	56, 291
StyI	CCWWGG	2 cut(s)	182, 609
SwaI	ATTTAAAT	1 cut(s)	52
TaaI	ACNGT	3 cut(s)	267, 329, 695
TaqI	TCGA	4 cut(s)	8, 126, 535, 648
TaqII	GACCGA	1 cut(s)	385
TasI	AATT	4 cut(s)	24, 83, 518, 569
TatI	WGTACW	1 cut(s)	402
TfiI	GAWTC	2 cut(s)	236, 561
Tru1I	TTAA	3 cut(s)	51, 507, 548
Tru9I	TTAA	3 cut(s)	51, 507, 548
TscAI	CASTG	1 cut(s)	692
TspDTI	ATGAA	4 cut(s)	353, 468, 531, 618
TspRI	CASTG	1 cut(s)	692
Tth111I	GACNNNGTC	1 cut(s)	210
VpaK11BI	GGWCC	2 cut(s)	206, 463
XbaI	TCTAGA	1 cut(s)	214
XceI	RCATGY	1 cut(s)	321
XmiI	GTMKAC	1 cut(s)	8
XspI	CTAG	2 cut(s)	210, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.