Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010364

Physical Location & Seq

Genomic Coordinates Reverse (-)

50605695 .. 50608296

Gene Structure 2602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCATTTCTGAGGTCAGTGGCCACCGCTAGTGCCATAGCTGCCTCTCTATTACCCGCTGCCATTGCCCTTTCTTCTTCTTCTTCTTCTTCTCCCTCTCAATCTTTCCGATTCCCTAAACCCCAAAACCTCTCCTTTCTCTCCTCCTTCTCCTCCTCCCCAAACCCAAATCCTCTGTTCCTCGCTACAAGCCTCACCAACTCTCCCTCAGCTCTCCACATGGACGCGCCCACATCGGAACAGAAGCCCTCCTTTCAGAGTGATGCTGTATTGCCAGAGCTACTGACAGAGTACATGGTAGATATGAAATGTGAGAGTTGTGTTAAGGCTGTCAAGAACAAGTTACAAGTTGTTGATGGGGTTAAAAGTGTAGAGGCGGACCTCGACACCCAAGTTGTTAGGATTCTGGGTGCAACCCCTCTGAAGACCATGACTGAAGCTCTCGAGCAGACGGGTCGAAAAGCGAGATTAATTGGGCAGGGGATCCCAGAAGATTTCTTGGTTTCCGCTGCTGTCGCTGAATTTAAAGGTCCAGATGTTTTTGGTGTGGTTCGATTTGCTCAGGTGAATATGGAGTTGGCTAGGATTGAAGCTAACTTTAGTGGGTTATCACCTGGGAAACATGGTTGGTCCATTAATGAATTTGGTGATTTAACAAAAGGTGCTGCTAGCACTGGAAAAGTATTTAATCCATCTACTGAAAGTGTAAACGAGCCGCTTGGTGACCTGGGAACATTGGATACTGATGAGAGTGGCAATGCCTTCTTCTCTGGTGTCAAAGAGAAGCTGAGAGTTTCTGATCTTATTGGGAGGTCAATAGCAGTATATGGAACTGCTGACAAGTCAGATTCGGGTGTCGCAGCTGCTGTAATCGCTAGAAGCGCTGGAGTAGGTGAGAACTACAAGAAGCTTTGCACTTGTGATGGTACCACGATATGGGAATCAAGTGACAAAGACTTTGTCATGAGCAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006878 GO:0008047 GO:0008150 GO:0008270 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016530 GO:0016531 GO:0016532 GO:0019725 GO:0030003 GO:0030234 GO:0042592 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050790 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0065009 GO:0098771 GO:0098772 GO:0140104

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

HMA Sod_Cu

Protein Analysis

325

Amino Acids

34.28

Weight (kDa)

5.16

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	99 - 154	1.6e-11	Heavy-metal-associated domain
Sod_Cu	PF00080	181 - 283	4.2e-18	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12520 AT1G12520 AT1G12520
fragaria_vesca	FvH4_5g01090
malus_domestica	MD00G1069800.v1.1 MD04G1072900.v1.1
prunus_persica	Prupe.5G084900_v2.0.a1 Prupe.5G084900_v2.0.a1
pyrus_communis	pycom04g06600 pycom06g06690
rosa_chinensis	RchiOBHm_Chr7g0200231
rosa_laevigata	RLG00000003742
rosa_multiflora	Rmu_sc0019284.1_g000001 Rmu_sc0025955.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256210
rosa_rugosa	Rorug07G0058600
rosa_samantha	Rh7AG184100 Rh7BG186800 Rh7CG194500 Rh7DG188200
rosa_wichuraiana	Rw7G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	926
AccB1I	GGYRCC	1 cut(s)	926
AccB7I	CCANNNNNTGG	1 cut(s)	936
AccII	CGCG	1 cut(s)	227
AciI	CCGC	5 cut(s)	27, 57, 377, 507, 716
AclWI	GGATC	2 cut(s)	478, 491
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	2 cut(s)	521, 641
AcuI	CTGAAG	2 cut(s)	443, 456
AfaI	GTAC	2 cut(s)	293, 928
AfeI	AGCGCT	1 cut(s)	883
AfiI	CCNNNNNNNGG	1 cut(s)	936
AgsI	TTSAA	1 cut(s)	590
AjnI	CCWGG	2 cut(s)	613, 726
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AluBI	AGCT	8 cut(s)	41, 212, 280, 440, 593, 787, 863, 910
AluI	AGCT	8 cut(s)	41, 212, 280, 440, 593, 787, 863, 910
AlwI	GGATC	2 cut(s)	478, 491
AlwNI	CAGNNNCTG	1 cut(s)	866
Ama87I	CYCGRG	1 cut(s)	443
Aor51HI	AGCGCT	1 cut(s)	883
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	6 cut(s)	41, 59, 509, 665, 860, 863
ApoI	RAATTY	2 cut(s)	521, 641
ArsI	GACNNNNNNTTYG	4 cut(s)	941, 945, 973, 977
AseI	ATTAAT	2 cut(s)	470, 636
Asp718I	GGTACC	1 cut(s)	926
AspLEI	GCGC	2 cut(s)	229, 884
AspS9I	GGNCC	3 cut(s)	379, 530, 630
AsuHPI	GGTGA	6 cut(s)	187, 577, 603, 659, 734, 905
AsuNHI	GCTAGC	1 cut(s)	668
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	3 cut(s)	379, 530, 630
BalI	TGGCCA	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	926
BbsI	GAAGAC	1 cut(s)	431
BbvCI	CCTCAGC	1 cut(s)	208
BbvI	GCAGC	6 cut(s)	28, 46, 496, 652, 850, 872
BccI	CCATC	3 cut(s)	350, 700, 917
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciT130I	CCWGG	2 cut(s)	615, 728
BciVI	GTATCC	1 cut(s)	733
BfaI	CTAG	4 cut(s)	30, 582, 669, 876
BfoI	RGCGCY	1 cut(s)	885
BfuI	GTATCC	1 cut(s)	733
BisI	GCNGC	7 cut(s)	42, 60, 510, 666, 716, 861, 864
BlsI	GCNGC	7 cut(s)	43, 61, 511, 667, 717, 862, 865
Bme1390I	CCNGG	2 cut(s)	615, 728
Bme18I	GGWCC	3 cut(s)	379, 530, 630
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	3 cut(s)	379, 530, 630
BmiI	GGNNCC	2 cut(s)	485, 928
BmrFI	CCNGG	2 cut(s)	615, 728
BmsI	GCATC	1 cut(s)	253
BmtI	GCTAGC	1 cut(s)	672
BpiI	GAAGAC	1 cut(s)	431
BpmI	CTGGAG	1 cut(s)	906
Bpu10I	CCTNAGC	2 cut(s)	208, 561
BsaJI	CCNNGG	2 cut(s)	614, 727
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bsc4I	CCNNNNNNNGG	1 cut(s)	936
Bse1I	ACTGG	1 cut(s)	679
Bse3DI	GCAATG	2 cut(s)	63, 763
BseBI	CCWGG	2 cut(s)	615, 728
BseDI	CCNNGG	2 cut(s)	614, 727
BseLI	CCNNNNNNNGG	1 cut(s)	936
BseMI	GCAATG	2 cut(s)	63, 763
BseMII	CTCAG	3 cut(s)	222, 575, 779
BseNI	ACTGG	1 cut(s)	679
BseRI	GAGGAG	3 cut(s)	133, 142, 145
BseXI	GCAGC	6 cut(s)	28, 46, 496, 652, 850, 872
Bsh1236I	CGCG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	23
BshNI	GGYRCC	1 cut(s)	926
BsiHKCI	CYCGRG	1 cut(s)	443
BslI	CCNNNNNNNGG	1 cut(s)	936
BsnI	GGCC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	443
Bsp143I	GATC	2 cut(s)	483, 799
BspACI	CCGC	5 cut(s)	27, 57, 377, 507, 716
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	3 cut(s)	221, 574, 780
BspFNI	CGCG	1 cut(s)	227
BspHI	TCATGA	1 cut(s)	963
BspLI	GGNNCC	2 cut(s)	485, 928
BspOI	GCTAGC	1 cut(s)	672
BspPI	GGATC	2 cut(s)	478, 491
BspT107I	GGYRCC	1 cut(s)	926
BsrDI	GCAATG	2 cut(s)	63, 763
BsrI	ACTGG	1 cut(s)	679
BssECI	CCNNGG	2 cut(s)	614, 727
BssMI	GATC	2 cut(s)	483, 799
Bst2UI	CCWGG	2 cut(s)	615, 728
BstC8I	GCNNGC	1 cut(s)	670
BstDEI	CTNAG	4 cut(s)	11, 208, 561, 788
BstEII	GGTNACC	1 cut(s)	722
BstFNI	CGCG	1 cut(s)	227
BstH2I	RGCGCY	1 cut(s)	885
BstHHI	GCGC	2 cut(s)	229, 884
BstKTI	GATC	2 cut(s)	486, 802
BstMBI	GATC	2 cut(s)	483, 799
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 65, 515, 872, 881
BstNI	CCWGG	2 cut(s)	615, 728
BstPI	GGTNACC	1 cut(s)	722
BstSCI	CCNGG	2 cut(s)	613, 726
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	6 cut(s)	28, 46, 496, 652, 850, 872
BstV2I	GAAGAC	1 cut(s)	431
BstX2I	RGATCY	1 cut(s)	483
BstYI	RGATCY	1 cut(s)	483
BsuI	GTATCC	1 cut(s)	733
BsuRI	GGCC	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	24, 672
Cac8I	GCNNGC	1 cut(s)	670
CaiI	CAGNNNCTG	1 cut(s)	866
CciI	TCATGA	1 cut(s)	963
CfoI	GCGC	2 cut(s)	229, 884
Cfr13I	GGNCC	3 cut(s)	379, 530, 630
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	292, 927
CviAII	CATG	5 cut(s)	220, 295, 430, 623, 964
CviQI	GTAC	2 cut(s)	292, 927
DdeI	CTNAG	4 cut(s)	11, 208, 561, 788
DpnI	GATC	2 cut(s)	485, 801
DpnII	GATC	2 cut(s)	483, 799
DraI	TTTAAA	1 cut(s)	526
EaeI	YGGCCR	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	392
Eco47I	GGWCC	3 cut(s)	379, 530, 630
Eco47III	AGCGCT	1 cut(s)	883
Eco57I	CTGAAG	2 cut(s)	443, 456
Eco88I	CYCGRG	1 cut(s)	443
Eco91I	GGTNACC	1 cut(s)	722
EcoO65I	GGTNACC	1 cut(s)	722
EcoRII	CCWGG	2 cut(s)	613, 726
FaeI	CATG	5 cut(s)	223, 298, 433, 626, 967
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FatI	CATG	5 cut(s)	219, 294, 429, 622, 963
FauI	CCCGC	1 cut(s)	64
Fnu4HI	GCNGC	7 cut(s)	42, 60, 510, 666, 716, 861, 864
Fsp4HI	GCNGC	7 cut(s)	42, 60, 510, 666, 716, 861, 864
FspBI	CTAG	4 cut(s)	30, 582, 669, 876
GlaI	GCGC	2 cut(s)	228, 883
GluI	GCNGC	7 cut(s)	42, 60, 510, 666, 716, 861, 864
GsuI	CTGGAG	1 cut(s)	906
HaeII	RGCGCY	1 cut(s)	885
HaeIII	GGCC	1 cut(s)	23
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	2 cut(s)	229, 884
Hin1II	CATG	5 cut(s)	223, 298, 433, 626, 967
Hin6I	GCGC	2 cut(s)	227, 882
HinP1I	GCGC	2 cut(s)	227, 882
HindIII	AAGCTT	1 cut(s)	908
HinfI	GANTC	4 cut(s)	111, 403, 848, 941
HphI	GGTGA	6 cut(s)	187, 577, 603, 659, 734, 905
Hpy166II	GTNNAC	1 cut(s)	709
Hpy188I	TCNGA	7 cut(s)	12, 110, 238, 258, 423, 799, 847
Hpy188III	TCNNGA	4 cut(s)	334, 443, 533, 964
Hpy8I	GTNNAC	1 cut(s)	709
HpyAV	CCTTC	2 cut(s)	157, 772
HpyCH4V	TGCA	2 cut(s)	413, 915
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 65, 515, 872, 881
HpyF3I	CTNAG	4 cut(s)	11, 208, 561, 788
Hsp92II	CATG	5 cut(s)	223, 298, 433, 626, 967
HspAI	GCGC	2 cut(s)	227, 882
KpnI	GGTACC	1 cut(s)	930
Kzo9I	GATC	2 cut(s)	483, 799
Lsp1109I	GCAGC	6 cut(s)	28, 46, 496, 652, 850, 872
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	4 cut(s)	30, 582, 669, 876
MaeIII	GTNAC	3 cut(s)	342, 722, 947
MalI	GATC	2 cut(s)	485, 801
MboI	GATC	2 cut(s)	483, 799
MboII	GAAGA	9 cut(s)	66, 69, 72, 75, 78, 81, 436, 503, 757
MflI	RGATCY	1 cut(s)	483
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	3 cut(s)	471, 521, 641
MluNI	TGGCCA	1 cut(s)	23
Mox20I	TGGCCA	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	8 cut(s)	324, 363, 470, 525, 636, 653, 687, 976
Msp20I	TGGCCA	1 cut(s)	23
MspA1I	CMGCKG	3 cut(s)	59, 509, 863
MspR9I	CCNGG	2 cut(s)	615, 728
MvaI	CCWGG	2 cut(s)	615, 728
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	5 cut(s)	41, 65, 515, 872, 881
NdeII	GATC	2 cut(s)	483, 799
NheI	GCTAGC	1 cut(s)	668
NlaIII	CATG	5 cut(s)	223, 298, 433, 626, 967
NlaIV	GGNNCC	2 cut(s)	485, 928
NmuCI	GTSAC	2 cut(s)	722, 947
PaeR7I	CTCGAG	1 cut(s)	443
PagI	TCATGA	1 cut(s)	963
PfeI	GAWTC	4 cut(s)	111, 403, 848, 941
PflFI	GACNNNGTC	1 cut(s)	959
PflMI	CCANNNNNTGG	1 cut(s)	936
PkrI	GCNGC	7 cut(s)	43, 61, 511, 667, 717, 862, 865
PshBI	ATTAAT	2 cut(s)	470, 636
Psp6I	CCWGG	2 cut(s)	613, 726
PspEI	GGTNACC	1 cut(s)	722
PspGI	CCWGG	2 cut(s)	613, 726
PspN4I	GGNNCC	2 cut(s)	485, 928
PspPI	GGNCC	3 cut(s)	379, 530, 630
PsrI	GAACNNNNNNTAC	2 cut(s)	724, 756
PstNI	CAGNNNCTG	1 cut(s)	866
PsuI	RGATCY	1 cut(s)	483
PsyI	GACNNNGTC	1 cut(s)	959
PvuII	CAGCTG	1 cut(s)	863
RsaI	GTAC	2 cut(s)	293, 928
RsaNI	GTAC	2 cut(s)	292, 927
SaqAI	TTAA	8 cut(s)	324, 363, 470, 525, 636, 653, 687, 976
SatI	GCNGC	7 cut(s)	42, 60, 510, 666, 716, 861, 864
Sau3AI	GATC	2 cut(s)	483, 799
Sau96I	GGNCC	3 cut(s)	379, 530, 630
ScrFI	CCNGG	2 cut(s)	615, 728
SfaNI	GCATC	1 cut(s)	253
Sfr274I	CTCGAG	1 cut(s)	443
SinI	GGWCC	3 cut(s)	379, 530, 630
SlaI	CTCGAG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	3 cut(s)	471, 521, 641
SsiI	CCGC	5 cut(s)	27, 57, 377, 507, 716
SspMI	CTAG	4 cut(s)	30, 582, 669, 876
StyD4I	CCNGG	2 cut(s)	613, 726
TaqI	TCGA	4 cut(s)	384, 444, 457, 553
TasI	AATT	3 cut(s)	471, 521, 641
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	1 cut(s)	718
TfiI	GAWTC	4 cut(s)	111, 403, 848, 941
Tru1I	TTAA	8 cut(s)	324, 363, 470, 525, 636, 653, 687, 976
Tru9I	TTAA	8 cut(s)	324, 363, 470, 525, 636, 653, 687, 976
TscAI	CASTG	2 cut(s)	24, 679
TseFI	GTSAC	2 cut(s)	722, 947
TseI	GCWGC	6 cut(s)	41, 59, 509, 665, 860, 863
Tsp45I	GTSAC	2 cut(s)	722, 947
TspDTI	ATGAA	2 cut(s)	320, 654
TspRI	CASTG	2 cut(s)	24, 679
Tth111I	GACNNNGTC	1 cut(s)	959
Van91I	CCANNNNNTGG	1 cut(s)	936
VpaK11BI	GGWCC	3 cut(s)	379, 530, 630
VspI	ATTAAT	2 cut(s)	470, 636
XapI	RAATTY	2 cut(s)	521, 641
XhoI	CTCGAG	1 cut(s)	443
XspI	CTAG	4 cut(s)	30, 582, 669, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.