Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010364

Physical Location & Seq

Genomic Coordinates Reverse (-)

52223280 .. 52225792

Gene Structure 2513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003742

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCATTTCTGAGGTCAGTGGCCACCACTAGTGCCATAGCTGCCTCTCTATTACCCGCCGCCATTGCCATTTCTTCTTCTTCTTCTTCCTCTCAATCTTTCCGATTCCCTCAATCCCAAAACTTCTCCTTTCTCTCCTCCTCCTTCTCCTCCCCCCCAAACCCAAAACCTCTGTTCCTCGCTACAAGCCTAACCAACTCTCCCTCAGCTCTCCACATGGACGCGCCCACATCGGAACAGAAGCCCTCCTTTCAGAGGGATGCTGTATTGCCAGAGCTACTGACAGAGTACATGGTAGATATGAAATGTGAGAGTTGTGTTAAGGCTGTCAAGAATAAGTTACAAGTTGTTGATGGGGTTAAAAGTGTAGAGGCGGACCTCGACACCCAAGTTGTTAGGATTCTGGATTTCTTGGTTTCTGCTGCTGTCGCTGAATTTAAAGGTCCAGATGTTTTTGGTGTGGTTCGATTTGCTCAGGTGAATATGGAGTTGGCTAGGATTGAAGCTAACTTTAGTGGGTTCTCACCTGGGAAACATGGTTGGTCCATTAATGAATTTGGTGATTTAACAAAAGGAGCTGCTAGCACTGGAAAAGTATTTAATCCATCTACTGAAGGTGTAAACGAGCCACTTGGTGACCTGGGAACATTGGATACTGATGCGAATGGCAATGCCTTCTTCTCTGGTGTCAAAGAGAAGCTGAGAGTTTCTGATCTTATTGGGAGGTCAATAGCAGTATATGGAACTGCTGACAAGACAGATTCAGGTGTCACAGCTGCTGTAATCGCTAGAAGCGCTGGAGTAGGTGAGAACTACAAGAAGCTTTGCACTTGTGACGGGACCACGATATGGGAATCAAGTGACAAAGACTTTGTCATGAGCAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006878 GO:0008047 GO:0008150 GO:0008270 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016530 GO:0016531 GO:0016532 GO:0019725 GO:0030003 GO:0030234 GO:0042592 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050790 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0065009 GO:0098771 GO:0098772 GO:0140104

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

HMA Sod_Cu

Protein Analysis

297

Amino Acids

31.4

Weight (kDa)

5.2

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	98 - 134	2.2e-08	Heavy-metal-associated domain
Sod_Cu	PF00080	152 - 255	1.1e-17	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12520 AT1G12520 AT1G12520
fragaria_vesca	FvH4_5g01090
malus_domestica	MD00G1069800.v1.1 MD04G1072900.v1.1
prunus_persica	Prupe.5G084900_v2.0.a1 Prupe.5G084900_v2.0.a1
pyrus_communis	pycom04g06600 pycom06g06690
rosa_chinensis	RchiOBHm_Chr7g0200231
rosa_laevigata	RLG00000003742
rosa_multiflora	Rmu_sc0019284.1_g000001 Rmu_sc0025955.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256210
rosa_rugosa	Rorug07G0058600
rosa_samantha	Rh7AG184100 Rh7BG186800 Rh7CG194500 Rh7DG188200
rosa_wichuraiana	Rw7G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	849
AccII	CGCG	1 cut(s)	224
AciI	CCGC	3 cut(s)	57, 60, 374
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	2 cut(s)	434, 554
AcuI	CTGAAG	1 cut(s)	633
AdeI	CACNNNGTG	1 cut(s)	635
AfaI	GTAC	1 cut(s)	290
AfeI	AGCGCT	1 cut(s)	796
AfiI	CCNNNNNNNGG	2 cut(s)	255, 849
AgsI	TTSAA	1 cut(s)	503
AhlI	ACTAGT	1 cut(s)	29
AjnI	CCWGG	2 cut(s)	526, 639
AjuI	GAANNNNNNNTTGG	2 cut(s)	473, 505
AluBI	AGCT	8 cut(s)	41, 209, 277, 506, 578, 700, 776, 823
AluI	AGCT	8 cut(s)	41, 209, 277, 506, 578, 700, 776, 823
AlwNI	CAGNNNCTG	1 cut(s)	779
Aor51HI	AGCGCT	1 cut(s)	796
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	4 cut(s)	41, 422, 578, 776
ApoI	RAATTY	2 cut(s)	434, 554
ArsI	GACNNNNNNTTYG	4 cut(s)	854, 858, 886, 890
AseI	ATTAAT	1 cut(s)	549
AspLEI	GCGC	2 cut(s)	226, 797
AspS9I	GGNCC	4 cut(s)	376, 443, 543, 840
AsuHPI	GGTGA	5 cut(s)	490, 516, 572, 647, 818
AsuNHI	GCTAGC	1 cut(s)	581
AvaII	GGWCC	4 cut(s)	376, 443, 543, 840
BalI	TGGCCA	1 cut(s)	23
BbvCI	CCTCAGC	1 cut(s)	205
BbvI	GCAGC	4 cut(s)	28, 409, 565, 763
BccI	CCATC	2 cut(s)	347, 613
BciT130I	CCWGG	2 cut(s)	528, 641
BciVI	GTATCC	1 cut(s)	646
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	4 cut(s)	30, 495, 582, 789
BfoI	RGCGCY	1 cut(s)	798
BfuI	GTATCC	1 cut(s)	646
BisI	GCNGC	5 cut(s)	42, 60, 423, 579, 777
BlsI	GCNGC	5 cut(s)	43, 61, 424, 580, 778
Bme1390I	CCNGG	2 cut(s)	528, 641
Bme18I	GGWCC	4 cut(s)	376, 443, 543, 840
BmgT120I	GGNCC	4 cut(s)	376, 443, 543, 840
BmiI	GGNNCC	1 cut(s)	841
BmrFI	CCNGG	2 cut(s)	528, 641
BmsI	GCATC	2 cut(s)	250, 649
BmtI	GCTAGC	1 cut(s)	585
BpmI	CTGGAG	1 cut(s)	819
Bpu10I	CCTNAGC	2 cut(s)	205, 474
BsaJI	CCNNGG	2 cut(s)	527, 640
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 849
Bse1I	ACTGG	1 cut(s)	592
Bse3DI	GCAATG	2 cut(s)	63, 676
BseBI	CCWGG	2 cut(s)	528, 641
BseDI	CCNNGG	2 cut(s)	527, 640
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	2 cut(s)	255, 849
BseMI	GCAATG	2 cut(s)	63, 676
BseMII	CTCAG	3 cut(s)	219, 488, 692
BseNI	ACTGG	1 cut(s)	592
BseRI	GAGGAG	3 cut(s)	127, 130, 139
BseXI	GCAGC	4 cut(s)	28, 409, 565, 763
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	853
BslI	CCNNNNNNNGG	2 cut(s)	255, 849
BsmFI	GGGAC	1 cut(s)	853
BsnI	GGCC	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	712
BspACI	CCGC	3 cut(s)	57, 60, 374
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	3 cut(s)	218, 487, 693
BspFNI	CGCG	1 cut(s)	224
BspHI	TCATGA	1 cut(s)	876
BspLI	GGNNCC	1 cut(s)	841
BspOI	GCTAGC	1 cut(s)	585
BsrDI	GCAATG	2 cut(s)	63, 676
BsrI	ACTGG	1 cut(s)	592
BssECI	CCNNGG	2 cut(s)	527, 640
BssMI	GATC	1 cut(s)	712
Bst2UI	CCWGG	2 cut(s)	528, 641
BstC8I	GCNNGC	1 cut(s)	583
BstDEI	CTNAG	4 cut(s)	11, 205, 474, 701
BstEII	GGTNACC	1 cut(s)	635
BstENI	CCTNNNNNAGG	1 cut(s)	253
BstF5I	GGATG	1 cut(s)	265
BstFNI	CGCG	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	798
BstHHI	GCGC	2 cut(s)	226, 797
BstKTI	GATC	1 cut(s)	715
BstMBI	GATC	1 cut(s)	712
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 65, 428, 785, 794
BstNI	CCWGG	2 cut(s)	528, 641
BstPI	GGTNACC	1 cut(s)	635
BstSCI	CCNGG	2 cut(s)	526, 639
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	4 cut(s)	28, 409, 565, 763
BsuI	GTATCC	1 cut(s)	646
BsuRI	GGCC	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	2 cut(s)	24, 585
Cac8I	GCNNGC	1 cut(s)	583
CaiI	CAGNNNCTG	1 cut(s)	779
CciI	TCATGA	1 cut(s)	876
CfoI	GCGC	2 cut(s)	226, 797
Cfr13I	GGNCC	4 cut(s)	376, 443, 543, 840
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	4 cut(s)	217, 292, 536, 877
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	4 cut(s)	11, 205, 474, 701
DpnI	GATC	1 cut(s)	714
DpnII	GATC	1 cut(s)	712
DraI	TTTAAA	1 cut(s)	439
DraIII	CACNNNGTG	1 cut(s)	635
EaeI	YGGCCR	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	389
Eco47I	GGWCC	4 cut(s)	376, 443, 543, 840
Eco47III	AGCGCT	1 cut(s)	796
Eco57I	CTGAAG	1 cut(s)	633
Eco91I	GGTNACC	1 cut(s)	635
EcoNI	CCTNNNNNAGG	1 cut(s)	253
EcoO65I	GGTNACC	1 cut(s)	635
EcoRII	CCWGG	2 cut(s)	526, 639
FaeI	CATG	4 cut(s)	220, 295, 539, 880
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FaqI	GGGAC	1 cut(s)	853
FatI	CATG	4 cut(s)	216, 291, 535, 876
FauI	CCCGC	1 cut(s)	64
Fnu4HI	GCNGC	5 cut(s)	42, 60, 423, 579, 777
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	5 cut(s)	42, 60, 423, 579, 777
FspBI	CTAG	4 cut(s)	30, 495, 582, 789
GlaI	GCGC	2 cut(s)	225, 796
GluI	GCNGC	5 cut(s)	42, 60, 423, 579, 777
GsuI	CTGGAG	1 cut(s)	819
HaeII	RGCGCY	1 cut(s)	798
HaeIII	GGCC	1 cut(s)	23
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	2 cut(s)	226, 797
Hin1II	CATG	4 cut(s)	220, 295, 539, 880
Hin6I	GCGC	2 cut(s)	224, 795
HinP1I	GCGC	2 cut(s)	224, 795
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	4 cut(s)	105, 400, 761, 854
HphI	GGTGA	5 cut(s)	490, 516, 572, 647, 818
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188I	TCNGA	5 cut(s)	12, 104, 235, 255, 712
Hpy188III	TCNNGA	4 cut(s)	331, 404, 446, 877
Hpy8I	GTNNAC	1 cut(s)	622
HpyAV	CCTTC	3 cut(s)	154, 608, 685
HpyCH4V	TGCA	1 cut(s)	828
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 65, 428, 785, 794
HpyF3I	CTNAG	4 cut(s)	11, 205, 474, 701
Hsp92II	CATG	4 cut(s)	220, 295, 539, 880
HspAI	GCGC	2 cut(s)	224, 795
Kzo9I	GATC	1 cut(s)	712
LmnI	GCTCC	1 cut(s)	575
Lsp1109I	GCAGC	4 cut(s)	28, 409, 565, 763
LweI	GCATC	2 cut(s)	250, 649
MaeI	CTAG	4 cut(s)	30, 495, 582, 789
MaeIII	GTNAC	5 cut(s)	339, 635, 769, 833, 860
MalI	GATC	1 cut(s)	714
MboI	GATC	1 cut(s)	712
MboII	GAAGA	6 cut(s)	66, 69, 72, 75, 78, 670
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	2 cut(s)	434, 554
MluNI	TGGCCA	1 cut(s)	23
Mox20I	TGGCCA	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	7 cut(s)	321, 360, 438, 549, 566, 600, 889
Msp20I	TGGCCA	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	776
MspR9I	CCNGG	2 cut(s)	528, 641
MvaI	CCWGG	2 cut(s)	528, 641
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	5 cut(s)	41, 65, 428, 785, 794
NdeII	GATC	1 cut(s)	712
NheI	GCTAGC	1 cut(s)	581
NlaIII	CATG	4 cut(s)	220, 295, 539, 880
NlaIV	GGNNCC	1 cut(s)	841
NmuCI	GTSAC	4 cut(s)	635, 769, 833, 860
PagI	TCATGA	1 cut(s)	876
PfeI	GAWTC	4 cut(s)	105, 400, 761, 854
PflFI	GACNNNGTC	1 cut(s)	872
PflMI	CCANNNNNTGG	1 cut(s)	849
PkrI	GCNGC	5 cut(s)	43, 61, 424, 580, 778
PshBI	ATTAAT	1 cut(s)	549
Psp6I	CCWGG	2 cut(s)	526, 639
PspEI	GGTNACC	1 cut(s)	635
PspGI	CCWGG	2 cut(s)	526, 639
PspN4I	GGNNCC	1 cut(s)	841
PspPI	GGNCC	4 cut(s)	376, 443, 543, 840
PsrI	GAACNNNNNNTAC	2 cut(s)	637, 669
PstNI	CAGNNNCTG	1 cut(s)	779
PsyI	GACNNNGTC	1 cut(s)	872
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SaqAI	TTAA	7 cut(s)	321, 360, 438, 549, 566, 600, 889
SatI	GCNGC	5 cut(s)	42, 60, 423, 579, 777
Sau3AI	GATC	1 cut(s)	712
Sau96I	GGNCC	4 cut(s)	376, 443, 543, 840
ScrFI	CCNGG	2 cut(s)	528, 641
SfaNI	GCATC	2 cut(s)	250, 649
SinI	GGWCC	4 cut(s)	376, 443, 543, 840
SpeI	ACTAGT	1 cut(s)	29
Sse9I	AATT	2 cut(s)	434, 554
SsiI	CCGC	3 cut(s)	57, 60, 374
SspMI	CTAG	4 cut(s)	30, 495, 582, 789
StyD4I	CCNGG	2 cut(s)	526, 639
TaqI	TCGA	2 cut(s)	381, 466
TasI	AATT	2 cut(s)	434, 554
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	4 cut(s)	105, 400, 761, 854
Tru1I	TTAA	7 cut(s)	321, 360, 438, 549, 566, 600, 889
Tru9I	TTAA	7 cut(s)	321, 360, 438, 549, 566, 600, 889
TscAI	CASTG	2 cut(s)	24, 592
TseFI	GTSAC	4 cut(s)	635, 769, 833, 860
TseI	GCWGC	4 cut(s)	41, 422, 578, 776
Tsp45I	GTSAC	4 cut(s)	635, 769, 833, 860
TspDTI	ATGAA	2 cut(s)	317, 567
TspRI	CASTG	2 cut(s)	24, 592
Tth111I	GACNNNGTC	1 cut(s)	872
Van91I	CCANNNNNTGG	1 cut(s)	849
VpaK11BI	GGWCC	4 cut(s)	376, 443, 543, 840
VspI	ATTAAT	1 cut(s)	549
XagI	CCTNNNNNAGG	1 cut(s)	253
XapI	RAATTY	2 cut(s)	434, 554
XspI	CTAG	4 cut(s)	30, 495, 582, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.