Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010364

Physical Location & Seq

Genomic Coordinates Forward (+)

15040009 .. 15042183

Gene Structure 2175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG186800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGACGCGCCCACATCGGAACAGAAGCCCTCCTTTCAGAGTGATGCTGTATTGCCAGAGCTACTGACAGAGTACATGGTAGATATGAAATGTGAGAGTTGTGTTAAGGCTGTCAAGAATAAGTTACAAGTTGTTGATGGGGTTAAAAGTGTAGAGGTGGACCTCGACACCCAAGTTGTTAGGATTCTGGGGGCAACCCCTCTGAAGACCATGACTGAAGCTCTCGAGCAGACGGGTCGAAAAGCGAGATTAATTGGGCAGGGGATCCCAGAAGATTTCTTGGTTTCCGCTGCTGTCGCCGAATTTAAAGGTCCAGATGTTTTTGGTGTGGTTCGATTTGCTCAGGTGAATATGGAGTTGGCTAGGATTGAAGCTAACTTTAGTGGGTTATCACCTGGGAAACATGGTTGGTCCATTAATGAATTTGGTGATTTAACAAAAGGTGCTGCTAGCACTGGAAAAGTATTTAATCCATCTACTGAAAGTGTAAACAAGCCGCTTGGTGACCTGGGAACATTGGATACTGATGAGAATGGCAATGCCTTCTTCTCTGGTGTCAAAGAGAAGCTGAGAGTTTCTGATCTTATTGGGAGGTCAATAGCAGTATATGGAACTGCTGACAAGTCAGATTCGGGTGTCGCAGCTGCTGTAATCGCTAGAAGCGCTGGAGTAGGTGAGAACTACAAGAAGCTTTGCACTTGTGATGGGACCACGATATGGGAATCAAGTGACAAAGACTTTGTCATGAGCAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006878 GO:0008047 GO:0008150 GO:0008270 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016530 GO:0016531 GO:0016532 GO:0019725 GO:0030003 GO:0030234 GO:0042592 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050790 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0065009 GO:0098771 GO:0098772 GO:0140104

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

HMA Sod_Cu

Protein Analysis

252

Amino Acids

26.88

Weight (kDa)

4.95

Isoelectric Point (pI)

26.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	26 - 81	2.1e-12	Heavy-metal-associated domain
Sod_Cu	PF00080	108 - 210	1.1e-18	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12520 AT1G12520 AT1G12520
fragaria_vesca	FvH4_5g01090
malus_domestica	MD00G1069800.v1.1 MD04G1072900.v1.1
prunus_persica	Prupe.5G084900_v2.0.a1 Prupe.5G084900_v2.0.a1
pyrus_communis	pycom04g06600 pycom06g06690
rosa_chinensis	RchiOBHm_Chr7g0200231
rosa_laevigata	RLG00000003742
rosa_multiflora	Rmu_sc0019284.1_g000001 Rmu_sc0025955.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256210
rosa_rugosa	Rorug07G0058600
rosa_samantha	Rh7AG184100 Rh7BG186800 Rh7CG194500 Rh7DG188200
rosa_wichuraiana	Rw7G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	717
AccII	CGCG	1 cut(s)	8
AciI	CCGC	2 cut(s)	288, 497
AclWI	GGATC	2 cut(s)	259, 272
AcsI	RAATTY	2 cut(s)	302, 422
AcuI	CTGAAG	2 cut(s)	224, 237
AfaI	GTAC	1 cut(s)	74
AfeI	AGCGCT	1 cut(s)	664
AfiI	CCNNNNNNNGG	1 cut(s)	717
AgsI	TTSAA	1 cut(s)	371
AjnI	CCWGG	2 cut(s)	394, 507
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AluBI	AGCT	6 cut(s)	61, 221, 374, 568, 644, 691
AluI	AGCT	6 cut(s)	61, 221, 374, 568, 644, 691
AlwI	GGATC	2 cut(s)	259, 272
AlwNI	CAGNNNCTG	1 cut(s)	647
Ama87I	CYCGRG	1 cut(s)	224
Aor51HI	AGCGCT	1 cut(s)	664
ApeKI	GCWGC	4 cut(s)	290, 446, 641, 644
ApoI	RAATTY	2 cut(s)	302, 422
ArsI	GACNNNNNNTTYG	4 cut(s)	722, 726, 754, 758
AseI	ATTAAT	2 cut(s)	251, 417
AspLEI	GCGC	2 cut(s)	10, 665
AspS9I	GGNCC	4 cut(s)	160, 311, 411, 708
AsuHPI	GGTGA	5 cut(s)	358, 384, 440, 515, 686
AsuNHI	GCTAGC	1 cut(s)	449
AvaI	CYCGRG	1 cut(s)	224
AvaII	GGWCC	4 cut(s)	160, 311, 411, 708
BamHI	GGATCC	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	212
BbvI	GCAGC	4 cut(s)	277, 433, 631, 653
BccI	CCATC	3 cut(s)	131, 481, 698
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BciT130I	CCWGG	2 cut(s)	396, 509
BciVI	GTATCC	1 cut(s)	514
BfaI	CTAG	3 cut(s)	363, 450, 657
BfoI	RGCGCY	1 cut(s)	666
BfuI	GTATCC	1 cut(s)	514
BisI	GCNGC	5 cut(s)	291, 447, 497, 642, 645
BlsI	GCNGC	5 cut(s)	292, 448, 498, 643, 646
Bme1390I	CCNGG	2 cut(s)	396, 509
Bme18I	GGWCC	4 cut(s)	160, 311, 411, 708
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	4 cut(s)	160, 311, 411, 708
BmiI	GGNNCC	2 cut(s)	266, 709
BmrFI	CCNGG	2 cut(s)	396, 509
BmsI	GCATC	1 cut(s)	34
BmtI	GCTAGC	1 cut(s)	453
BpiI	GAAGAC	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	687
Bpu10I	CCTNAGC	1 cut(s)	342
BsaJI	CCNNGG	2 cut(s)	395, 508
Bsc4I	CCNNNNNNNGG	1 cut(s)	717
Bse1I	ACTGG	1 cut(s)	460
Bse3DI	GCAATG	1 cut(s)	544
BseBI	CCWGG	2 cut(s)	396, 509
BseDI	CCNNGG	2 cut(s)	395, 508
BseLI	CCNNNNNNNGG	1 cut(s)	717
BseMI	GCAATG	1 cut(s)	544
BseMII	CTCAG	2 cut(s)	356, 560
BseNI	ACTGG	1 cut(s)	460
BseXI	GCAGC	4 cut(s)	277, 433, 631, 653
Bsh1236I	CGCG	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	721
BslI	CCNNNNNNNGG	1 cut(s)	717
BsmFI	GGGAC	1 cut(s)	721
BsoBI	CYCGRG	1 cut(s)	224
Bsp143I	GATC	2 cut(s)	264, 580
BspACI	CCGC	2 cut(s)	288, 497
BspCNI	CTCAG	2 cut(s)	355, 561
BspFNI	CGCG	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	744
BspLI	GGNNCC	2 cut(s)	266, 709
BspOI	GCTAGC	1 cut(s)	453
BspPI	GGATC	2 cut(s)	259, 272
BsrDI	GCAATG	1 cut(s)	544
BsrI	ACTGG	1 cut(s)	460
BssECI	CCNNGG	2 cut(s)	395, 508
BssMI	GATC	2 cut(s)	264, 580
Bst2UI	CCWGG	2 cut(s)	396, 509
BstC8I	GCNNGC	1 cut(s)	451
BstDEI	CTNAG	2 cut(s)	342, 569
BstEII	GGTNACC	1 cut(s)	503
BstFNI	CGCG	1 cut(s)	8
BstH2I	RGCGCY	1 cut(s)	666
BstHHI	GCGC	2 cut(s)	10, 665
BstKTI	GATC	2 cut(s)	267, 583
BstMBI	GATC	2 cut(s)	264, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 653, 662
BstNI	CCWGG	2 cut(s)	396, 509
BstPI	GGTNACC	1 cut(s)	503
BstSCI	CCNGG	2 cut(s)	394, 507
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	4 cut(s)	277, 433, 631, 653
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	514
BtsIMutI	CAGTG	1 cut(s)	453
Cac8I	GCNNGC	1 cut(s)	451
CaiI	CAGNNNCTG	1 cut(s)	647
CciI	TCATGA	1 cut(s)	744
CfoI	GCGC	2 cut(s)	10, 665
Cfr13I	GGNCC	4 cut(s)	160, 311, 411, 708
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	4 cut(s)	76, 211, 404, 745
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	2 cut(s)	342, 569
DpnI	GATC	2 cut(s)	266, 582
DpnII	GATC	2 cut(s)	264, 580
DraI	TTTAAA	1 cut(s)	307
Eco47I	GGWCC	4 cut(s)	160, 311, 411, 708
Eco47III	AGCGCT	1 cut(s)	664
Eco57I	CTGAAG	2 cut(s)	224, 237
Eco88I	CYCGRG	1 cut(s)	224
Eco91I	GGTNACC	1 cut(s)	503
EcoO65I	GGTNACC	1 cut(s)	503
EcoRII	CCWGG	2 cut(s)	394, 507
FaeI	CATG	4 cut(s)	79, 214, 407, 748
FaiI	YATR	9 cut(s)	77, 86, 212, 353, 405, 607, 609, 718, 746
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FaqI	GGGAC	1 cut(s)	721
FatI	CATG	4 cut(s)	75, 210, 403, 744
Fnu4HI	GCNGC	5 cut(s)	291, 447, 497, 642, 645
Fsp4HI	GCNGC	5 cut(s)	291, 447, 497, 642, 645
FspBI	CTAG	3 cut(s)	363, 450, 657
GlaI	GCGC	2 cut(s)	9, 664
GluI	GCNGC	5 cut(s)	291, 447, 497, 642, 645
GsuI	CTGGAG	1 cut(s)	687
HaeII	RGCGCY	1 cut(s)	666
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	2 cut(s)	10, 665
Hin1II	CATG	4 cut(s)	79, 214, 407, 748
Hin6I	GCGC	2 cut(s)	8, 663
HinP1I	GCGC	2 cut(s)	8, 663
HindIII	AAGCTT	1 cut(s)	689
HinfI	GANTC	3 cut(s)	184, 629, 722
HphI	GGTGA	5 cut(s)	358, 384, 440, 515, 686
Hpy166II	GTNNAC	2 cut(s)	160, 490
Hpy188I	TCNGA	5 cut(s)	19, 39, 204, 580, 628
Hpy188III	TCNNGA	4 cut(s)	115, 224, 314, 745
Hpy8I	GTNNAC	2 cut(s)	160, 490
HpyAV	CCTTC	1 cut(s)	553
HpyCH4V	TGCA	1 cut(s)	696
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 653, 662
HpyF3I	CTNAG	2 cut(s)	342, 569
Hsp92II	CATG	4 cut(s)	79, 214, 407, 748
HspAI	GCGC	2 cut(s)	8, 663
Kzo9I	GATC	2 cut(s)	264, 580
Lsp1109I	GCAGC	4 cut(s)	277, 433, 631, 653
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	3 cut(s)	363, 450, 657
MaeIII	GTNAC	3 cut(s)	123, 503, 728
MalI	GATC	2 cut(s)	266, 582
MboI	GATC	2 cut(s)	264, 580
MboII	GAAGA	3 cut(s)	217, 284, 538
MflI	RGATCY	1 cut(s)	264
MluCI	AATT	3 cut(s)	252, 302, 422
MnlI	CCTC	5 cut(s)	40, 148, 173, 210, 585
MseI	TTAA	8 cut(s)	105, 144, 251, 306, 417, 434, 468, 757
MspA1I	CMGCKG	2 cut(s)	290, 644
MspR9I	CCNGG	2 cut(s)	396, 509
MvaI	CCWGG	2 cut(s)	396, 509
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	296, 653, 662
NdeII	GATC	2 cut(s)	264, 580
NheI	GCTAGC	1 cut(s)	449
NlaIII	CATG	4 cut(s)	79, 214, 407, 748
NlaIV	GGNNCC	2 cut(s)	266, 709
NmuCI	GTSAC	2 cut(s)	503, 728
PaeR7I	CTCGAG	1 cut(s)	224
PagI	TCATGA	1 cut(s)	744
PfeI	GAWTC	3 cut(s)	184, 629, 722
PflFI	GACNNNGTC	1 cut(s)	740
PflMI	CCANNNNNTGG	1 cut(s)	717
PkrI	GCNGC	5 cut(s)	292, 448, 498, 643, 646
PshBI	ATTAAT	2 cut(s)	251, 417
Psp6I	CCWGG	2 cut(s)	394, 507
PspEI	GGTNACC	1 cut(s)	503
PspGI	CCWGG	2 cut(s)	394, 507
PspN4I	GGNNCC	2 cut(s)	266, 709
PspPI	GGNCC	4 cut(s)	160, 311, 411, 708
PsrI	GAACNNNNNNTAC	2 cut(s)	505, 537
PstNI	CAGNNNCTG	1 cut(s)	647
PsuI	RGATCY	1 cut(s)	264
PsyI	GACNNNGTC	1 cut(s)	740
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
SaqAI	TTAA	8 cut(s)	105, 144, 251, 306, 417, 434, 468, 757
SatI	GCNGC	5 cut(s)	291, 447, 497, 642, 645
Sau3AI	GATC	2 cut(s)	264, 580
Sau96I	GGNCC	4 cut(s)	160, 311, 411, 708
ScrFI	CCNGG	2 cut(s)	396, 509
SfaNI	GCATC	1 cut(s)	34
Sfr274I	CTCGAG	1 cut(s)	224
SinI	GGWCC	4 cut(s)	160, 311, 411, 708
SlaI	CTCGAG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	3 cut(s)	252, 302, 422
SsiI	CCGC	2 cut(s)	288, 497
SspMI	CTAG	3 cut(s)	363, 450, 657
StyD4I	CCNGG	2 cut(s)	394, 507
TaqI	TCGA	4 cut(s)	165, 225, 238, 334
TasI	AATT	3 cut(s)	252, 302, 422
TatI	WGTACW	1 cut(s)	72
TauI	GCSGC	1 cut(s)	499
TfiI	GAWTC	3 cut(s)	184, 629, 722
Tru1I	TTAA	8 cut(s)	105, 144, 251, 306, 417, 434, 468, 757
Tru9I	TTAA	8 cut(s)	105, 144, 251, 306, 417, 434, 468, 757
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	2 cut(s)	503, 728
TseI	GCWGC	4 cut(s)	290, 446, 641, 644
Tsp45I	GTSAC	2 cut(s)	503, 728
TspDTI	ATGAA	2 cut(s)	101, 435
TspRI	CASTG	1 cut(s)	460
Tth111I	GACNNNGTC	1 cut(s)	740
Van91I	CCANNNNNTGG	1 cut(s)	717
VpaK11BI	GGWCC	4 cut(s)	160, 311, 411, 708
VspI	ATTAAT	2 cut(s)	251, 417
XapI	RAATTY	2 cut(s)	302, 422
XhoI	CTCGAG	1 cut(s)	224
XspI	CTAG	3 cut(s)	363, 450, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.