AT1G12530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006828
Physical Location & Seq
Reverse (-)
4268986 .. 4270907
1922 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G12530.1

Sequence Viewer

Length: 582 bp
ATGATGGGTATGGCGAGGAAGATAAGCAAAGAGGAAGTTGTAGAGAAGCTTAAGGACGACGGAGATTTTGATCGTCTCCGTCTCAAAATCATTCGCCGCCTCAAAGAAAACGAGGATTTACGGAATAATATGATATCAGTTGTCAAGGAGTCAACATCTTTGAAACGACATGGTGCTCAAAATATGAAAACCAGGCAACTCTCTGATGCGATATTCGAAGAAGTCGGGAGCAAGATGCTAAGCCAGCTCTCAGATGGTTTATGGGGGATAATAAGATCAGAAGACGGGATGAAGAATGAAATCAGAGAAACCGTTCAATCCGTCTACGCCACATTATCTAACCCGAGAGGCGAGAAACGCGGAACATCCGCTAGAGAAATGGAACATAAGATTCCAACACCAAAAAAAGAAGCAAGAACTGATTTCAACACCAGTCCAGCGAGTAAACAGAAGCAAGAGCTGATTAAAGGAGCTGTAGAAGATAACAAAGGAGAGGCATGTAGTGATGATGTACAAGATAACAAAGGAGAAGCATATAATGATGATGAAGAAGATCCTGAACTCCCTCCTGGCTTTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COMPASS-Shg1

Protein Analysis

193

Amino Acids

21.82

Weight (kDa)

5.47

Isoelectric Point (pI)

46.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 324
AccII CGCG 1 cut(s) 360
AciI CCGC 3 cut(s) 97, 360, 369
AclWI GGATC 1 cut(s) 548
AfaI GTAC 1 cut(s) 513
AfiI CCNNNNNNNGG 1 cut(s) 575
AflII CTTAAG 1 cut(s) 50
AgsI TTSAA 3 cut(s) 163, 317, 427
AjnI CCWGG 2 cut(s) 191, 568
AluBI AGCT 4 cut(s) 49, 247, 460, 473
AluI AGCT 4 cut(s) 49, 247, 460, 473
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 2 cut(s) 80, 86
AlwI GGATC 1 cut(s) 548
Ama87I CYCGRG 1 cut(s) 343
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
Asp700I GAANNNNTTC 1 cut(s) 312
AsuII TTCGAA 1 cut(s) 216
AvaI CYCGRG 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 178
BccI CCATC 1 cut(s) 248
BciT130I CCWGG 2 cut(s) 193, 570
BcoDI GTCTC 2 cut(s) 80, 86
BfaI CTAG 1 cut(s) 372
BfmI CTRYAG 1 cut(s) 474
BfrI CTTAAG 1 cut(s) 50
BisI GCNGC 1 cut(s) 97
BlpI GCTNAGC 1 cut(s) 239
BlsI GCNGC 1 cut(s) 98
Bme1390I CCNGG 2 cut(s) 193, 570
BmeT110I CYCGRG 1 cut(s) 343
BmrFI CCNGG 2 cut(s) 193, 570
BmsI GCATC 2 cut(s) 196, 225
BpiI GAAGAC 1 cut(s) 288
Bpu1102I GCTNAGC 1 cut(s) 239
Bpu14I TTCGAA 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 575
Bse1I ACTGG 1 cut(s) 432
Bse8I GATNNNNATC 1 cut(s) 69
BseBI CCWGG 2 cut(s) 193, 570
BseGI GGATG 2 cut(s) 294, 365
BseJI GATNNNNATC 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 575
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 432
Bsh1236I CGCG 1 cut(s) 360
BsiHKAI GWGCWC 1 cut(s) 178
BsiHKCI CYCGRG 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 575
BsmAI GTCTC 2 cut(s) 80, 86
BsmBI CGTCTC 2 cut(s) 80, 86
BsoBI CYCGRG 1 cut(s) 343
Bsp119I TTCGAA 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 178
Bsp1407I TGTACA 1 cut(s) 511
Bsp143I GATC 3 cut(s) 70, 275, 553
Bsp1720I GCTNAGC 1 cut(s) 239
BspACI CCGC 3 cut(s) 97, 360, 369
BspCNI CTCAG 1 cut(s) 263
BspFNI CGCG 1 cut(s) 360
BspPI GGATC 1 cut(s) 548
BspT104I TTCGAA 1 cut(s) 216
BspTI CTTAAG 1 cut(s) 50
BsrGI TGTACA 1 cut(s) 511
BsrI ACTGG 1 cut(s) 432
BssMI GATC 3 cut(s) 70, 275, 553
Bst2UI CCWGG 2 cut(s) 193, 570
Bst4CI ACNGT 1 cut(s) 313
BstAFI CTTAAG 1 cut(s) 50
BstAUI TGTACA 1 cut(s) 511
BstBI TTCGAA 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 245
BstDEI CTNAG 2 cut(s) 239, 250
BstF5I GGATG 2 cut(s) 294, 365
BstFNI CGCG 1 cut(s) 360
BstKTI GATC 3 cut(s) 73, 278, 556
BstMAI GTCTC 2 cut(s) 80, 86
BstMBI GATC 3 cut(s) 70, 275, 553
BstMWI GCNNNNNNNGC 2 cut(s) 244, 357
BstNI CCWGG 2 cut(s) 193, 570
BstNSI RCATGY 1 cut(s) 501
BstSCI CCNGG 2 cut(s) 191, 568
BstSFI CTRYAG 1 cut(s) 474
BstUI CGCG 1 cut(s) 360
BstV2I GAAGAC 1 cut(s) 288
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
BtsCI GGATG 2 cut(s) 294, 365
Cac8I GCNNGC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 512
CviAII CATG 2 cut(s) 170, 498
CviJI RGCY 7 cut(s) 49, 243, 247, 460, 473, 573, 579
CviKI_1 RGCY 7 cut(s) 49, 243, 247, 460, 473, 573, 579
CviQI GTAC 1 cut(s) 512
DdeI CTNAG 2 cut(s) 239, 250
DpnI GATC 3 cut(s) 72, 277, 555
DpnII GATC 3 cut(s) 70, 275, 553
Eco32I GATATC 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 343
EcoRII CCWGG 2 cut(s) 191, 568
EcoRV GATATC 1 cut(s) 135
Esp3I CGTCTC 2 cut(s) 80, 86
FaeI CATG 2 cut(s) 173, 501
FaiI YATR 9 cut(s) 11, 131, 171, 185, 262, 387, 499, 535, 537
FatI CATG 2 cut(s) 169, 497
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 1 cut(s) 97
FokI GGATG 2 cut(s) 301, 352
Fsp4HI GCNGC 1 cut(s) 97
FspBI CTAG 1 cut(s) 372
GluI GCNGC 1 cut(s) 97
Hin1II CATG 2 cut(s) 173, 501
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 2 cut(s) 149, 391
Hpy166II GTNNAC 3 cut(s) 153, 325, 446
Hpy188I TCNGA 4 cut(s) 205, 253, 280, 305
Hpy188III TCNNGA 2 cut(s) 226, 557
Hpy8I GTNNAC 3 cut(s) 153, 325, 446
Hpy99I CGWCG 1 cut(s) 62
HpyCH4III ACNGT 1 cut(s) 313
HpyF10VI GCNNNNNNNGC 2 cut(s) 244, 357
HpyF3I CTNAG 2 cut(s) 239, 250
Hsp92II CATG 2 cut(s) 173, 501
Kzo9I GATC 3 cut(s) 70, 275, 553
LmnI GCTCC 2 cut(s) 228, 470
LpnPI CCDG 7 cut(s) 178, 205, 257, 445, 450, 555, 570
LweI GCATC 2 cut(s) 196, 225
MaeI CTAG 1 cut(s) 372
MalI GATC 3 cut(s) 72, 277, 555
MboI GATC 3 cut(s) 70, 275, 553
MboII GAAGA 7 cut(s) 31, 230, 293, 304, 491, 560, 563
MflI RGATCY 1 cut(s) 553
MhlI GDGCHC 1 cut(s) 178
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 419
MnlI CCTC 7 cut(s) 9, 25, 106, 110, 341, 487, 576
MroXI GAANNNNTTC 1 cut(s) 312
MseI TTAA 2 cut(s) 51, 465
MspCI CTTAAG 1 cut(s) 50
MspR9I CCNGG 2 cut(s) 193, 570
MvaI CCWGG 2 cut(s) 193, 570
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 244, 357
NdeII GATC 3 cut(s) 70, 275, 553
NlaIII CATG 2 cut(s) 173, 501
NspI RCATGY 1 cut(s) 501
NspV TTCGAA 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 391
PkrI GCNGC 1 cut(s) 98
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
Psp6I CCWGG 2 cut(s) 191, 568
PspGI CCWGG 2 cut(s) 191, 568
PsuI RGATCY 1 cut(s) 553
RsaI GTAC 1 cut(s) 513
RsaNI GTAC 1 cut(s) 512
SaqAI TTAA 2 cut(s) 51, 465
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 3 cut(s) 70, 275, 553
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 193, 570
SduI GDGCHC 1 cut(s) 178
SetI ASST 4 cut(s) 51, 249, 462, 475
SfaNI GCATC 2 cut(s) 196, 225
SfcI CTRYAG 1 cut(s) 474
SfuI TTCGAA 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SsiI CCGC 3 cut(s) 97, 360, 369
SspMI CTAG 1 cut(s) 372
StyD4I CCNGG 2 cut(s) 191, 568
TaaI ACNGT 1 cut(s) 313
TaqI TCGA 1 cut(s) 216
TatI WGTACW 1 cut(s) 511
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 2 cut(s) 51, 465
Tru9I TTAA 2 cut(s) 51, 465
TspDTI ATGAA 4 cut(s) 200, 305, 312, 561
TspGWI ACGGA 4 cut(s) 68, 75, 136, 310
Vha464I CTTAAG 1 cut(s) 50
XceI RCATGY 1 cut(s) 501
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XmiI GTMKAC 1 cut(s) 324
XmnI GAANNNNTTC 1 cut(s) 312
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.