Rh7DG186100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0006828
Physical Location & Seq
Forward (+)
17294128 .. 17294427
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG186100.1

Sequence Viewer

Length: 300 bp
ATGGGTTGTTCGCCGGCGTTCATGTCGAAGAAGGCTGGGCCGGCCACTACGAGTACTACTGACGATTCGGTGGGCTGGTCGTCGGGGTTCGTGTTGAGAAAGGGGGCTCCAAAAATGACCTCAGAGAGCGCCGGGTCCGTCATTGATGACGACGATCCGGTGGGTCGTGTTGGTGCTGGAAAAGTATTGGTCTTTAATTTGGACTCAGAAATTGGGGTCTTTGGAAGCTGGGGACGCAAGAGTATATATATATATACACAGCGGCAAGTGGGTTTCCAAGTGAGCCACGAAATAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.48

Weight (kDa)

6.54

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 262
AclWI GGATC 1 cut(s) 149
AcoI YGGCCR 1 cut(s) 42
AfaI GTAC 1 cut(s) 55
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
AlwI GGATC 1 cut(s) 149
AoxI GGCC 2 cut(s) 38, 42
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 2 cut(s) 38, 135
AsuC2I CCSGG 1 cut(s) 133
AvaII GGWCC 1 cut(s) 135
BanII GRGCYC 1 cut(s) 109
BcnI CCSGG 1 cut(s) 133
BfaI CTAG 1 cut(s) 298
BfoI RGCGCY 1 cut(s) 132
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
BmcAI AGTACT 1 cut(s) 55
Bme1390I CCNGG 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 2 cut(s) 38, 135
BmiI GGNNCC 2 cut(s) 108, 136
BmrFI CCNGG 1 cut(s) 133
BpuMI CCSGG 1 cut(s) 133
BsaWI WCCGGW 1 cut(s) 157
Bse118I RCCGGY 2 cut(s) 13, 40
BseMII CTCAG 2 cut(s) 135, 219
BseYI CCCAGC 2 cut(s) 35, 228
BshFI GGCC 2 cut(s) 40, 44
BsiSI CCGG 4 cut(s) 14, 41, 132, 158
BslFI GGGAC 1 cut(s) 246
BsmFI GGGAC 1 cut(s) 246
BsnI GGCC 2 cut(s) 40, 44
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 1 cut(s) 154
BspACI CCGC 1 cut(s) 262
BspANI GGCC 2 cut(s) 40, 44
BspCNI CTCAG 2 cut(s) 134, 218
BspLI GGNNCC 2 cut(s) 108, 136
BspPI GGATC 1 cut(s) 149
BsrFI RCCGGY 2 cut(s) 13, 40
BssAI RCCGGY 2 cut(s) 13, 40
BssMI GATC 1 cut(s) 154
BstC8I GCNNGC 2 cut(s) 15, 42
BstDEI CTNAG 2 cut(s) 121, 205
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 2 cut(s) 41, 234
BstSCI CCNGG 1 cut(s) 131
BsuRI GGCC 2 cut(s) 40, 44
Cac8I GCNNGC 2 cut(s) 15, 42
CfoI GCGC 1 cut(s) 131
Cfr10I RCCGGY 2 cut(s) 13, 40
Cfr13I GGNCC 2 cut(s) 38, 135
CseI GACGC 1 cut(s) 243
Csp6I GTAC 1 cut(s) 54
CviAII CATG 1 cut(s) 22
CviJI RGCY 7 cut(s) 35, 40, 44, 75, 107, 228, 285
CviKI_1 RGCY 7 cut(s) 35, 40, 44, 75, 107, 228, 285
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 2 cut(s) 121, 205
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 135
EcoT38I GRGCYC 1 cut(s) 109
FaeI CATG 1 cut(s) 25
FaiI YATR 7 cut(s) 23, 245, 247, 249, 251, 253, 255
FaqI GGGAC 1 cut(s) 246
FatI CATG 1 cut(s) 21
Fnu4HI GCNGC 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 109
FseI GGCCGGCC 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 263
FspBI CTAG 1 cut(s) 298
GlaI GCGC 1 cut(s) 130
GluI GCNGC 1 cut(s) 263
GsaI CCCAGC 2 cut(s) 39, 232
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 2 cut(s) 40, 44
HapII CCGG 4 cut(s) 14, 41, 132, 158
HgaI GACGC 1 cut(s) 243
HhaI GCGC 1 cut(s) 131
Hin1II CATG 1 cut(s) 25
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HinfI GANTC 2 cut(s) 65, 203
HpaII CCGG 4 cut(s) 14, 41, 132, 158
Hpy188I TCNGA 2 cut(s) 124, 208
Hpy99I CGWCG 2 cut(s) 85, 155
HpyAV CCTTC 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 234
HpyF3I CTNAG 2 cut(s) 121, 205
Hsp92II CATG 1 cut(s) 25
HspAI GCGC 1 cut(s) 129
KroI GCCGGC 2 cut(s) 13, 40
KroNI GCCGGC 2 cut(s) 15, 42
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 8 cut(s) 21, 27, 54, 61, 145, 162, 171, 214
MaeI CTAG 1 cut(s) 298
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 2 cut(s) 196, 210
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 1 cut(s) 130
MreI CGCCGGCG 1 cut(s) 13
MroNI GCCGGC 2 cut(s) 13, 40
MseI TTAA 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 4 cut(s) 14, 41, 132, 158
MspR9I CCNGG 1 cut(s) 133
MwoI GCNNNNNNNGC 2 cut(s) 41, 234
NaeI GCCGGC 2 cut(s) 15, 42
NciI CCSGG 1 cut(s) 133
NdeII GATC 1 cut(s) 154
NgoMIV GCCGGC 2 cut(s) 13, 40
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 2 cut(s) 108, 136
PdiI GCCGGC 2 cut(s) 15, 42
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 264
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PspFI CCCAGC 2 cut(s) 35, 228
PspN4I GGNNCC 2 cut(s) 108, 136
PspPI GGNCC 2 cut(s) 38, 135
RigI GGCCGGCC 1 cut(s) 44
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 2 cut(s) 38, 135
ScaI AGTACT 1 cut(s) 55
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 1 cut(s) 109
SetI ASST 2 cut(s) 122, 230
SgrAI CRCCGGYG 1 cut(s) 13
SinI GGWCC 1 cut(s) 135
Sse9I AATT 2 cut(s) 196, 210
SsiI CCGC 1 cut(s) 262
SspMI CTAG 1 cut(s) 298
StyD4I CCNGG 1 cut(s) 131
TaqI TCGA 1 cut(s) 26
TasI AATT 2 cut(s) 196, 210
TatI WGTACW 1 cut(s) 53
TauI GCSGC 1 cut(s) 265
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TspDTI ATGAA 1 cut(s) 10
TspGWI ACGGA 1 cut(s) 127
VpaK11BI GGWCC 1 cut(s) 135
XspI CTAG 1 cut(s) 298
ZrmI AGTACT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.