Rroxscaffold_3G00256290

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
50661872 .. 50662593
722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00256290.1

Sequence Viewer

Length: 210 bp
ATGTCGAACAAGGCTGGGCCGGCCACTACAAGTACTACTGACGATTCGGTGGGTTGGTCGCCGGGGTTCGTGTTGAGAAAGGCGGCTCCAAAAATGACCTCAGAGAGCGCTGGGTCCGTCATTGATGACGACGATCCGGTGGGTCGTGTTGGTGCTCGAAAATGGAGTGGGATGTGGGTTTCGACTGCCGGTGATGGACCTGTGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.03

Weight (kDa)

4.98

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 83
AclWI GGATC 1 cut(s) 128
AcoI YGGCCR 1 cut(s) 21
AfaI GTAC 1 cut(s) 34
AfeI AGCGCT 1 cut(s) 109
Alw21I GWGCWC 1 cut(s) 157
AlwI GGATC 1 cut(s) 128
Aor51HI AGCGCT 1 cut(s) 109
AoxI GGCC 2 cut(s) 17, 21
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 3 cut(s) 17, 114, 197
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 2 cut(s) 114, 197
Bbv12I GWGCWC 1 cut(s) 157
BccI CCATC 1 cut(s) 188
BcnI CCSGG 1 cut(s) 63
BfoI RGCGCY 1 cut(s) 111
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
BmcAI AGTACT 1 cut(s) 34
Bme1390I CCNGG 1 cut(s) 63
Bme18I GGWCC 2 cut(s) 114, 197
BmgT120I GGNCC 3 cut(s) 17, 114, 197
BmiI GGNNCC 2 cut(s) 87, 115
BmrFI CCNGG 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 62
BsaWI WCCGGW 1 cut(s) 136
Bse118I RCCGGY 2 cut(s) 19, 188
BseDI CCNNGG 1 cut(s) 62
BseGI GGATG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 114
BseYI CCCAGC 2 cut(s) 14, 110
BshFI GGCC 2 cut(s) 19, 23
BsiHKAI GWGCWC 1 cut(s) 157
BsiSI CCGG 4 cut(s) 20, 62, 137, 189
BsnI GGCC 2 cut(s) 19, 23
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 1 cut(s) 83
BspANI GGCC 2 cut(s) 19, 23
BspCNI CTCAG 1 cut(s) 113
BspLI GGNNCC 2 cut(s) 87, 115
BspPI GGATC 1 cut(s) 128
BsrFI RCCGGY 2 cut(s) 19, 188
BssAI RCCGGY 2 cut(s) 19, 188
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 100
BstF5I GGATG 1 cut(s) 177
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 61
BsuRI GGCC 2 cut(s) 19, 23
BtsCI GGATG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 21
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 2 cut(s) 19, 188
Cfr13I GGNCC 3 cut(s) 17, 114, 197
Csp6I GTAC 1 cut(s) 33
CviJI RGCY 4 cut(s) 14, 19, 23, 86
CviKI_1 RGCY 4 cut(s) 14, 19, 23, 86
CviQI GTAC 1 cut(s) 33
DdeI CTNAG 1 cut(s) 100
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 21
Eco47I GGWCC 2 cut(s) 114, 197
Eco47III AGCGCT 1 cut(s) 109
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 1 cut(s) 184
FseI GGCCGGCC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 84
GlaI GCGC 1 cut(s) 109
GluI GCNGC 1 cut(s) 84
GsaI CCCAGC 2 cut(s) 18, 114
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 2 cut(s) 19, 23
HapII CCGG 4 cut(s) 20, 62, 137, 189
HhaI GCGC 1 cut(s) 110
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HinfI GANTC 1 cut(s) 44
HpaII CCGG 4 cut(s) 20, 62, 137, 189
HphI GGTGA 1 cut(s) 203
Hpy188I TCNGA 1 cut(s) 103
Hpy99I CGWCG 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 100
HspAI GCGC 1 cut(s) 108
KroI GCCGGC 1 cut(s) 19
KroNI GCCGGC 1 cut(s) 21
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 5 cut(s) 33, 75, 96, 150, 202
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 157
MnlI CCTC 1 cut(s) 109
MroNI GCCGGC 1 cut(s) 19
MspI CCGG 4 cut(s) 20, 62, 137, 189
MspR9I CCNGG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 20
NaeI GCCGGC 1 cut(s) 21
NciI CCSGG 1 cut(s) 63
NdeII GATC 1 cut(s) 133
NgoMIV GCCGGC 1 cut(s) 19
NlaIV GGNNCC 2 cut(s) 87, 115
PdiI GCCGGC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 85
PspFI CCCAGC 2 cut(s) 14, 110
PspN4I GGNNCC 2 cut(s) 87, 115
PspPI GGNCC 3 cut(s) 17, 114, 197
RigI GGCCGGCC 1 cut(s) 23
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 3 cut(s) 17, 114, 197
ScaI AGTACT 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 63
SduI GDGCHC 1 cut(s) 157
SetI ASST 2 cut(s) 101, 202
SinI GGWCC 2 cut(s) 114, 197
SsiI CCGC 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 61
TaqI TCGA 3 cut(s) 5, 157, 182
TatI WGTACW 1 cut(s) 32
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 1 cut(s) 44
TspGWI ACGGA 1 cut(s) 106
VpaK11BI GGWCC 2 cut(s) 114, 197
ZrmI AGTACT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.