Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006828

Physical Location & Seq

Genomic Coordinates Reverse (-)

52267120 .. 52268173

Gene Structure 1054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003751

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGAGTGCTCCCAGAATCTCAAGGTAAGCAAAGAAGAGGTGATAGCGAAGCTAAAGGACGATGGCGACTTCGACAGGCTCCGCCGCAAGATCATTCAAAAGCTCAAAAACAACGAGGAATTACGCGGAAATATTATTTCAATTGTGAAGCAATCACAGGCGCTTAATCGCCCAGGTGCCGAGAACATGAAACCCAGGCAACTCTCTGATGACATTTACCAGGAGGTTGGGGGCAAAGTAATGAGCCAGATATCGGATGGGTTGTGGGGGATAATCAGATCAAGTGATGCAATGCAGAGTGAAATAAGCGAAACTGTTCAGTCTGTTTACAATAAATTGGCTAATCCAGAAGGGAATGCAGAGGGTCAGTCATCCACTCATGTTGTTCATGTTCAAGTCGATTCTAATGACAATGGATTAGTCGGTGGTGCTGCCAGTGGAGCTGTTGATGGTGTGTACGACAATCATCAGGATGACAATAACCATGAGGCACAATTTCCGCCTCGTGAAATAGGAGCTATGACAGATCACCGGGAAATGTTACATAATAAGATGGATACCGAGGGTGTTGTTCGCGTAGTGGCTTCTGGCGTTTCTACAGACATGGAGCGCAAGCAGGAATGTGATGGTAGTGATGAGGACCCTGATGTGCCTCCTGGTTTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COMPASS-Shg1

Protein Analysis

223

Amino Acids

24.36

Weight (kDa)

4.76

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12530
fragaria_vesca	FvH4_5g01130
malus_domestica	MD04G1071100.v1.1 MD06G1069000.v1.1
prunus_persica	Prupe.5G086200_v2.0.a1
pyrus_communis	pycom06g06760
rosa_chinensis	RchiOBHm_Chr7g0199991 RchiOBHm_Chr7g0200011 RchiOBHm_Chr7g0200111 RchiOBHm_Chr7g0224151
rosa_laevigata	RLG00000003751
rosa_multiflora	Rmu_sc0003357.1_g000003 Rmu_sc0006685.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256290
rosa_rugosa	Rorug07G0057700 Rorug07G0057800.1 Rorug07G0057900
rosa_samantha	Rh7AG183200 Rh7AG486200 Rh7BG186200 Rh7CG192800 Rh7CG192900 Rh7DG186100 Rh7DG186200 Rh7DG187300
rosa_wichuraiana	Rw7G016040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AccII	CGCG	2 cut(s)	126, 576
AciI	CCGC	4 cut(s)	82, 85, 126, 500
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	2 cut(s)	253, 662
AgsI	TTSAA	3 cut(s)	98, 141, 395
AjnI	CCWGG	4 cut(s)	172, 194, 219, 655
AluBI	AGCT	4 cut(s)	52, 103, 443, 518
AluI	AGCT	4 cut(s)	52, 103, 443, 518
Alw21I	GWGCWC	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	431
Asp700I	GAANNNNTTC	1 cut(s)	315
AspLEI	GCGC	2 cut(s)	163, 612
AspS9I	GGNCC	1 cut(s)	640
AsuC2I	CCSGG	1 cut(s)	533
AsuHPI	GGTGA	2 cut(s)	52, 521
AvaII	GGWCC	1 cut(s)	640
BanI	GGYRCC	1 cut(s)	176
BauI	CACGAG	1 cut(s)	504
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	5 cut(s)	56, 251, 443, 547, 620
BciT130I	CCWGG	4 cut(s)	174, 196, 221, 657
BciVI	GTATCC	1 cut(s)	550
BcnI	CCSGG	1 cut(s)	533
BfmI	CTRYAG	1 cut(s)	597
BfoI	RGCGCY	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	550
BisI	GCNGC	2 cut(s)	85, 432
BlsI	GCNGC	2 cut(s)	86, 433
Bme1390I	CCNGG	5 cut(s)	174, 196, 221, 533, 657
Bme18I	GGWCC	1 cut(s)	640
BmgT120I	GGNCC	1 cut(s)	640
BmiI	GGNNCC	3 cut(s)	80, 178, 642
BmrFI	CCNGG	5 cut(s)	174, 196, 221, 533, 657
BmsI	GCATC	1 cut(s)	277
BpuEI	CTTGAG	1 cut(s)	5
BpuMI	CCSGG	1 cut(s)	533
BsaJI	CCNNGG	3 cut(s)	172, 194, 561
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 662
Bse1I	ACTGG	1 cut(s)	435
Bse3DI	GCAATG	1 cut(s)	297
BseBI	CCWGG	4 cut(s)	174, 196, 221, 657
BseDI	CCNNGG	3 cut(s)	172, 194, 561
BseGI	GGATG	3 cut(s)	262, 371, 478
BseLI	CCNNNNNNNGG	2 cut(s)	253, 662
BseMI	GCAATG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	435
BseXI	GCAGC	1 cut(s)	418
Bsh1236I	CGCG	2 cut(s)	126, 576
BshNI	GGYRCC	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	532
BslI	CCNNNNNNNGG	2 cut(s)	253, 662
BsmI	GAATGC	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	3 cut(s)	90, 278, 526
BspACI	CCGC	4 cut(s)	82, 85, 126, 500
BspFNI	CGCG	2 cut(s)	126, 576
BspLI	GGNNCC	3 cut(s)	80, 178, 642
BspT107I	GGYRCC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	435
BssECI	CCNNGG	3 cut(s)	172, 194, 561
BssMI	GATC	3 cut(s)	90, 278, 526
BssSI	CACGAG	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	504
Bst2UI	CCWGG	4 cut(s)	174, 196, 221, 657
Bst4CI	ACNGT	1 cut(s)	316
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	614
BstF5I	GGATG	3 cut(s)	262, 371, 478
BstFNI	CGCG	2 cut(s)	126, 576
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	2 cut(s)	163, 612
BstKTI	GATC	3 cut(s)	93, 281, 529
BstMBI	GATC	3 cut(s)	90, 278, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstNI	CCWGG	4 cut(s)	174, 196, 221, 657
BstSCI	CCNGG	5 cut(s)	172, 194, 219, 531, 655
BstSFI	CTRYAG	1 cut(s)	597
BstUI	CGCG	2 cut(s)	126, 576
BstV1I	GCAGC	1 cut(s)	418
BstXI	CCANNNNNNTGG	1 cut(s)	227
BsuI	GTATCC	1 cut(s)	550
BtsCI	GGATG	3 cut(s)	262, 371, 478
BtsIMutI	CAGTG	1 cut(s)	442
Cac8I	GCNNGC	1 cut(s)	614
CfoI	GCGC	2 cut(s)	163, 612
Cfr13I	GGNCC	1 cut(s)	640
Csp6I	GTAC	1 cut(s)	457
CspCI	CAANNNNNGTGG	2 cut(s)	364, 399
CviAII	CATG	5 cut(s)	187, 380, 389, 485, 604
CviJI	RGCY	8 cut(s)	52, 79, 103, 246, 341, 443, 518, 584
CviKI_1	RGCY	8 cut(s)	52, 79, 103, 246, 341, 443, 518, 584
CviQI	GTAC	1 cut(s)	457
DpnI	GATC	3 cut(s)	92, 280, 528
DpnII	GATC	3 cut(s)	90, 278, 526
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
EciI	GGCGGA	2 cut(s)	71, 489
Eco32I	GATATC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	640
EcoO109I	RGGNCCY	1 cut(s)	640
EcoRII	CCWGG	4 cut(s)	172, 194, 219, 655
EcoRV	GATATC	1 cut(s)	252
FaeI	CATG	5 cut(s)	190, 383, 392, 488, 607
FaiI	YATR	7 cut(s)	188, 381, 390, 486, 521, 546, 605
FatI	CATG	5 cut(s)	186, 379, 388, 484, 603
Fnu4HI	GCNGC	2 cut(s)	85, 432
FokI	GGATG	3 cut(s)	269, 358, 485
Fsp4HI	GCNGC	2 cut(s)	85, 432
GlaI	GCGC	2 cut(s)	162, 611
GluI	GCNGC	2 cut(s)	85, 432
HaeII	RGCGCY	1 cut(s)	164
HapII	CCGG	1 cut(s)	532
HhaI	GCGC	2 cut(s)	163, 612
Hin1II	CATG	5 cut(s)	190, 383, 392, 488, 607
Hin6I	GCGC	2 cut(s)	161, 610
HinP1I	GCGC	2 cut(s)	161, 610
HinfI	GANTC	2 cut(s)	16, 401
HpaII	CCGG	1 cut(s)	532
HphI	GGTGA	2 cut(s)	52, 521
Hpy166II	GTNNAC	2 cut(s)	328, 457
Hpy188I	TCNGA	3 cut(s)	208, 256, 278
Hpy188III	TCNNGA	3 cut(s)	347, 470, 506
Hpy8I	GTNNAC	2 cut(s)	328, 457
HpyAV	CCTTC	1 cut(s)	344
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4V	TGCA	3 cut(s)	290, 295, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
Hsp92II	CATG	5 cut(s)	190, 383, 392, 488, 607
HspAI	GCGC	2 cut(s)	161, 610
Kzo9I	GATC	3 cut(s)	90, 278, 526
LmnI	GCTCC	5 cut(s)	14, 84, 440, 515, 607
Lsp1109I	GCAGC	1 cut(s)	418
LweI	GCATC	1 cut(s)	277
MaeIII	GTNAC	1 cut(s)	540
MalI	GATC	3 cut(s)	92, 280, 528
MboI	GATC	3 cut(s)	90, 278, 526
MboII	GAAGA	1 cut(s)	47
MfeI	CAATTG	1 cut(s)	141
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	4 cut(s)	119, 141, 335, 494
MnlI	CCTC	9 cut(s)	31, 109, 217, 355, 481, 513, 556, 631, 663
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	2 cut(s)	165, 667
MslI	CAYNNNNRTG	1 cut(s)	471
MspI	CCGG	1 cut(s)	532
MspR9I	CCNGG	5 cut(s)	174, 196, 221, 533, 657
MunI	CAATTG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	4 cut(s)	174, 196, 221, 657
MvnI	CGCG	2 cut(s)	126, 576
MwoI	GCNNNNNNNGC	1 cut(s)	440
NciI	CCSGG	1 cut(s)	533
NdeII	GATC	3 cut(s)	90, 278, 526
NlaIII	CATG	5 cut(s)	190, 383, 392, 488, 607
NlaIV	GGNNCC	3 cut(s)	80, 178, 642
NmeAIII	GCCGAG	1 cut(s)	205
PctI	GAATGC	1 cut(s)	361
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	16, 401
PkrI	GCNGC	2 cut(s)	86, 433
PpuMI	RGGWCCY	1 cut(s)	640
Psp5II	RGGWCCY	1 cut(s)	640
Psp6I	CCWGG	4 cut(s)	172, 194, 219, 655
PspGI	CCWGG	4 cut(s)	172, 194, 219, 655
PspN4I	GGNNCC	3 cut(s)	80, 178, 642
PspPI	GGNCC	1 cut(s)	640
PspPPI	RGGWCCY	1 cut(s)	640
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	2 cut(s)	165, 667
SatI	GCNGC	2 cut(s)	85, 432
Sau3AI	GATC	3 cut(s)	90, 278, 526
Sau96I	GGNCC	1 cut(s)	640
ScrFI	CCNGG	5 cut(s)	174, 196, 221, 533, 657
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	8 cut(s)	27, 42, 54, 105, 178, 228, 445, 520
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	1 cut(s)	597
SinI	GGWCC	1 cut(s)	640
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	4 cut(s)	119, 141, 335, 494
SsiI	CCGC	4 cut(s)	82, 85, 126, 500
SspI	AATATT	1 cut(s)	133
StyD4I	CCNGG	5 cut(s)	172, 194, 219, 531, 655
TaaI	ACNGT	1 cut(s)	316
TaqI	TCGA	2 cut(s)	72, 399
TasI	AATT	4 cut(s)	119, 141, 335, 494
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	2 cut(s)	16, 401
Tru1I	TTAA	2 cut(s)	165, 667
Tru9I	TTAA	2 cut(s)	165, 667
TscAI	CASTG	1 cut(s)	442
TseI	GCWGC	1 cut(s)	431
TspDTI	ATGAA	2 cut(s)	203, 377
TspRI	CASTG	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.