Rw7G016040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0006828
Physical Location & Seq
Forward (+)
16419137 .. 16424763
5627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G016040.1

Sequence Viewer

Length: 669 bp
ATGGAGTGCTCCCAGAATCTCAAGGTAAGCAAAGAAGAGGTGATAGCGAAGCTAAAGGACGATGGCGACTTCGACAGGCTCCGCCGCAAGATCATTCAAAAGCTCAAAAACAACGAGGAATTACGCGAAAATATTATTTCAATTGTGAAGCAATCACAAGCGCTTAATCGCCCAGGTGCCGAGAACATGAAACCCAGGCAACTCTCTGATGACATTTATCAGGAGGTTGGGGGCAAAGTGATGAGCCAGATATCGGATGGGTTGTGGGGGATAATCAGATCAAGTGGTGCAATGCAGAGTGAAATAAGCGAAACTGTTCAGTCTGTTTACAATAAATTGGCTAATCCAGATGGGAATGCAGACGGTCAGTCCTCCACTCATGTTGTTCAAGTTCAAGTCGAGTCTAGTGATAATGGATTCGTCGCCGGTGCTGCCAGTGGAGCTGTTGATGGTGTGTACGACAATCATCAGGATGACAATAACCATGAGGCACAACTTCCGCCTCGTGAAAAAGGAGCTATGACAGAGCACCGGGAAATGTTACAGGATAAGATGGATACTGAGGGTGTTGATCGCGTAGTGGCTTCTGGCGTTTCTACAGACACGGAGCACAAGCAGGAGTGTGATGGTAGCGACGAGGACCCCGATGTGCCTCCTGGTTTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COMPASS-Shg1

Protein Analysis

222

Amino Acids

24.33

Weight (kDa)

4.63

Isoelectric Point (pI)

49.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COMPASS-Shg1 PF05205 15 - 106 5.5e-06 COMPASS (Complex proteins associated with Set1p) component shg1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AccII CGCG 2 cut(s) 126, 576
AciI CCGC 3 cut(s) 82, 85, 500
AfaI GTAC 1 cut(s) 458
AfeI AGCGCT 1 cut(s) 162
AfiI CCNNNNNNNGG 2 cut(s) 253, 662
AgsI TTSAA 4 cut(s) 98, 141, 389, 395
AhdI GACNNNNNGTC 1 cut(s) 367
AjnI CCWGG 3 cut(s) 172, 194, 655
AluBI AGCT 4 cut(s) 52, 103, 443, 518
AluI AGCT 4 cut(s) 52, 103, 443, 518
Alw21I GWGCWC 3 cut(s) 11, 531, 612
Aor51HI AGCGCT 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 431
Asp700I GAANNNNTTC 1 cut(s) 315
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 640
AsuC2I CCSGG 1 cut(s) 533
AsuHPI GGTGA 1 cut(s) 52
AvaII GGWCC 1 cut(s) 640
BanI GGYRCC 1 cut(s) 176
BauI CACGAG 1 cut(s) 504
Bbv12I GWGCWC 3 cut(s) 11, 531, 612
BbvI GCAGC 1 cut(s) 418
BccI CCATC 6 cut(s) 56, 251, 344, 443, 547, 620
BciT130I CCWGG 3 cut(s) 174, 196, 657
BciVI GTATCC 1 cut(s) 550
BcnI CCSGG 1 cut(s) 533
BfaI CTAG 1 cut(s) 405
BfmI CTRYAG 1 cut(s) 597
BfoI RGCGCY 1 cut(s) 164
BfuI GTATCC 1 cut(s) 550
BisI GCNGC 2 cut(s) 85, 432
BlsI GCNGC 2 cut(s) 86, 433
Bme1390I CCNGG 4 cut(s) 174, 196, 533, 657
Bme18I GGWCC 1 cut(s) 640
BmeRI GACNNNNNGTC 1 cut(s) 367
BmgT120I GGNCC 1 cut(s) 640
BmiI GGNNCC 3 cut(s) 80, 178, 642
BmrFI CCNGG 4 cut(s) 174, 196, 533, 657
BpuEI CTTGAG 1 cut(s) 5
BpuMI CCSGG 1 cut(s) 533
BsaJI CCNNGG 2 cut(s) 172, 194
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 662
Bse118I RCCGGY 1 cut(s) 425
Bse1I ACTGG 1 cut(s) 435
Bse3DI GCAATG 1 cut(s) 297
BseBI CCWGG 3 cut(s) 174, 196, 657
BseDI CCNNGG 2 cut(s) 172, 194
BseGI GGATG 2 cut(s) 262, 478
BseLI CCNNNNNNNGG 2 cut(s) 253, 662
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 552
BseNI ACTGG 1 cut(s) 435
BseXI GCAGC 1 cut(s) 418
Bsh1236I CGCG 2 cut(s) 126, 576
BshNI GGYRCC 1 cut(s) 176
BsiHKAI GWGCWC 3 cut(s) 11, 531, 612
BsiSI CCGG 2 cut(s) 426, 532
BslI CCNNNNNNNGG 2 cut(s) 253, 662
BsmI GAATGC 1 cut(s) 361
Bsp1286I GDGCHC 3 cut(s) 11, 531, 612
Bsp143I GATC 3 cut(s) 90, 278, 571
BspACI CCGC 3 cut(s) 82, 85, 500
BspCNI CTCAG 1 cut(s) 553
BspFNI CGCG 2 cut(s) 126, 576
BspLI GGNNCC 3 cut(s) 80, 178, 642
BspT107I GGYRCC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 297
BsrFI RCCGGY 1 cut(s) 425
BsrI ACTGG 1 cut(s) 435
BssAI RCCGGY 1 cut(s) 425
BssECI CCNNGG 2 cut(s) 172, 194
BssMI GATC 3 cut(s) 90, 278, 571
BssSI CACGAG 1 cut(s) 504
Bst2BI CACGAG 1 cut(s) 504
Bst2UI CCWGG 3 cut(s) 174, 196, 657
Bst4CI ACNGT 2 cut(s) 316, 365
Bst6I CTCTTC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 561
BstF5I GGATG 2 cut(s) 262, 478
BstFNI CGCG 2 cut(s) 126, 576
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 3 cut(s) 93, 281, 574
BstMBI GATC 3 cut(s) 90, 278, 571
BstMWI GCNNNNNNNGC 2 cut(s) 431, 440
BstNI CCWGG 3 cut(s) 174, 196, 657
BstSCI CCNGG 4 cut(s) 172, 194, 531, 655
BstSFI CTRYAG 1 cut(s) 597
BstUI CGCG 2 cut(s) 126, 576
BstV1I GCAGC 1 cut(s) 418
BsuI GTATCC 1 cut(s) 550
BtsCI GGATG 2 cut(s) 262, 478
BtsIMutI CAGTG 1 cut(s) 442
CfoI GCGC 1 cut(s) 163
Cfr10I RCCGGY 1 cut(s) 425
Cfr13I GGNCC 1 cut(s) 640
Csp6I GTAC 1 cut(s) 457
CspCI CAANNNNNGTGG 2 cut(s) 364, 399
CviAII CATG 3 cut(s) 187, 380, 485
CviJI RGCY 8 cut(s) 52, 79, 103, 246, 341, 443, 518, 584
CviKI_1 RGCY 8 cut(s) 52, 79, 103, 246, 341, 443, 518, 584
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 1 cut(s) 561
DpnI GATC 3 cut(s) 92, 280, 573
DpnII GATC 3 cut(s) 90, 278, 571
DriI GACNNNNNGTC 1 cut(s) 367
Eam1104I CTCTTC 1 cut(s) 30
Eam1105I GACNNNNNGTC 1 cut(s) 367
EarI CTCTTC 1 cut(s) 30
EciI GGCGGA 2 cut(s) 71, 489
Eco32I GATATC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 640
Eco47III AGCGCT 1 cut(s) 162
EcoO109I RGGNCCY 1 cut(s) 640
EcoRII CCWGG 3 cut(s) 172, 194, 655
EcoRV GATATC 1 cut(s) 252
FaeI CATG 3 cut(s) 190, 383, 488
FaiI YATR 4 cut(s) 188, 381, 486, 521
FatI CATG 3 cut(s) 186, 379, 484
Fnu4HI GCNGC 2 cut(s) 85, 432
FokI GGATG 2 cut(s) 269, 485
Fsp4HI GCNGC 2 cut(s) 85, 432
FspBI CTAG 1 cut(s) 405
GlaI GCGC 1 cut(s) 162
GluI GCNGC 2 cut(s) 85, 432
HaeII RGCGCY 1 cut(s) 164
HapII CCGG 2 cut(s) 426, 532
HhaI GCGC 1 cut(s) 163
Hin1II CATG 3 cut(s) 190, 383, 488
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HinfI GANTC 3 cut(s) 16, 401, 417
HpaII CCGG 2 cut(s) 426, 532
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 2 cut(s) 328, 457
Hpy188I TCNGA 3 cut(s) 208, 256, 278
Hpy188III TCNNGA 4 cut(s) 221, 347, 470, 506
Hpy8I GTNNAC 2 cut(s) 328, 457
Hpy99I CGWCG 2 cut(s) 425, 638
HpyCH4III ACNGT 2 cut(s) 316, 365
HpyCH4V TGCA 3 cut(s) 290, 295, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 440
HpyF3I CTNAG 1 cut(s) 561
Hsp92II CATG 3 cut(s) 190, 383, 488
HspAI GCGC 1 cut(s) 161
Kzo9I GATC 3 cut(s) 90, 278, 571
LmnI GCTCC 5 cut(s) 14, 84, 440, 515, 607
Lsp1109I GCAGC 1 cut(s) 418
MaeI CTAG 1 cut(s) 405
MaeIII GTNAC 1 cut(s) 540
MalI GATC 3 cut(s) 92, 280, 573
MboI GATC 3 cut(s) 90, 278, 571
MboII GAAGA 1 cut(s) 47
MfeI CAATTG 1 cut(s) 141
MhlI GDGCHC 3 cut(s) 11, 531, 612
MluCI AATT 3 cut(s) 119, 141, 335
MlyI GAGTC 1 cut(s) 410
MnlI CCTC 9 cut(s) 31, 109, 217, 382, 481, 513, 556, 631, 663
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 2 cut(s) 165, 667
MslI CAYNNNNRTG 1 cut(s) 471
MspI CCGG 2 cut(s) 426, 532
MspR9I CCNGG 4 cut(s) 174, 196, 533, 657
MunI CAATTG 1 cut(s) 141
Mva1269I GAATGC 1 cut(s) 361
MvaI CCWGG 3 cut(s) 174, 196, 657
MvnI CGCG 2 cut(s) 126, 576
MwoI GCNNNNNNNGC 2 cut(s) 431, 440
NciI CCSGG 1 cut(s) 533
NdeII GATC 3 cut(s) 90, 278, 571
NlaIII CATG 3 cut(s) 190, 383, 488
NlaIV GGNNCC 3 cut(s) 80, 178, 642
NmeAIII GCCGAG 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 642
PctI GAATGC 1 cut(s) 361
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 2 cut(s) 16, 417
PkrI GCNGC 2 cut(s) 86, 433
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
PpuMI RGGWCCY 1 cut(s) 640
Psp5II RGGWCCY 1 cut(s) 640
Psp6I CCWGG 3 cut(s) 172, 194, 655
PspGI CCWGG 3 cut(s) 172, 194, 655
PspN4I GGNNCC 3 cut(s) 80, 178, 642
PspPI GGNCC 1 cut(s) 640
PspPPI RGGWCCY 1 cut(s) 640
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
RseI CAYNNNNRTG 1 cut(s) 471
SaqAI TTAA 2 cut(s) 165, 667
SatI GCNGC 2 cut(s) 85, 432
Sau3AI GATC 3 cut(s) 90, 278, 571
Sau96I GGNCC 1 cut(s) 640
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 4 cut(s) 174, 196, 533, 657
SduI GDGCHC 3 cut(s) 11, 531, 612
SetI ASST 8 cut(s) 27, 42, 54, 105, 178, 228, 445, 520
SfcI CTRYAG 1 cut(s) 597
SgrAI CRCCGGYG 1 cut(s) 425
SinI GGWCC 1 cut(s) 640
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 3 cut(s) 119, 141, 335
SsiI CCGC 3 cut(s) 82, 85, 500
SspI AATATT 1 cut(s) 133
SspMI CTAG 1 cut(s) 405
StyD4I CCNGG 4 cut(s) 172, 194, 531, 655
TaaI ACNGT 2 cut(s) 316, 365
TaqI TCGA 2 cut(s) 72, 399
TasI AATT 3 cut(s) 119, 141, 335
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 2 cut(s) 16, 417
Tru1I TTAA 2 cut(s) 165, 667
Tru9I TTAA 2 cut(s) 165, 667
TscAI CASTG 1 cut(s) 442
TseI GCWGC 1 cut(s) 431
TspDTI ATGAA 1 cut(s) 203
TspGWI ACGGA 1 cut(s) 620
TspRI CASTG 1 cut(s) 442
VpaK11BI GGWCC 1 cut(s) 640
XcmI CCANNNNNNNNNTGG 1 cut(s) 254
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.