Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0006828

Physical Location & Seq

Genomic Coordinates Reverse (-)

16603071 .. 16605046

Gene Structure 1976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1069000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAGTGCTCGCACGACCACAAGGTCAGCAAAGAGGAGGTGATCGCCAAGCTCAAGGACGACGGAGACTTCGACAGGCTCCGCCGCAGCATCATCCTCAAGCTAAAAAACAATGAAGAATTGCGAGAAAATATTGCTTCTATTGTGAAGCAATCGGCCACGCTTAATCGTGAAGGTGCTGAGAATATGAAACCCAGACAGCTTTCCGATGACATTTATCAGGAGGTTGGGGATCAAGTAATGAGCCACGTATCTGATGGGTTGTGGGGTATAATCAGATCAAGTGATGGCATGAAAAGTGAAATAGCAGAAACTGTTCAATCCGTCTACAATAAATTGACTAACCCAAATGGGGAAGCTGAGGGTGAACCCTCCACTCGTGATGTTCCAGTTCAATACAAAGTTGACAGTAATGGCTTAGTTGTTGCTGTCGCCAGTGAAATTGATGATAAGTTGTCTGACAATGAGCCAAAAATACCACCGGGATTTTGTTTTTCTGGCAATTATCAGAAAAATGATAATGATGCGTTACAACTACCTCTACCTCATGTTAAAGGAGCCATTGAAGAATGGAAGGGAAGTTCACACCAGTTACAAGATAGGATGGATGATTCTGTTGATAACAGAATGGCACCTGGCATTTCTACAGACATGGAGCACAAGCAGGCATGTGATGGTAGTGATGAGGACCCTGATGTGCCTCCAGGTTTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COMPASS-Shg1

Protein Analysis

239

Amino Acids

26.36

Weight (kDa)

4.64

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12530
fragaria_vesca	FvH4_5g01130
malus_domestica	MD04G1071100.v1.1 MD06G1069000.v1.1
prunus_persica	Prupe.5G086200_v2.0.a1
pyrus_communis	pycom06g06760
rosa_chinensis	RchiOBHm_Chr7g0199991 RchiOBHm_Chr7g0200011 RchiOBHm_Chr7g0200111 RchiOBHm_Chr7g0224151
rosa_laevigata	RLG00000003751
rosa_multiflora	Rmu_sc0003357.1_g000003 Rmu_sc0006685.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256290
rosa_rugosa	Rorug07G0057700 Rorug07G0057800.1 Rorug07G0057900
rosa_samantha	Rh7AG183200 Rh7AG486200 Rh7BG186200 Rh7CG192800 Rh7CG192900 Rh7DG186100 Rh7DG186200 Rh7DG187300
rosa_wichuraiana	Rw7G016040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
AccB1I	GGYRCC	1 cut(s)	631
AccB7I	CCANNNNNTGG	1 cut(s)	710
AccI	GTMKAC	1 cut(s)	327
AciI	CCGC	2 cut(s)	82, 85
AclWI	GGATC	1 cut(s)	240
AcoI	YGGCCR	1 cut(s)	156
AfiI	CCNNNNNNNGG	2 cut(s)	352, 710
AgsI	TTSAA	3 cut(s)	320, 395, 566
AjnI	CCWGG	2 cut(s)	634, 703
AloI	GAACNNNNNNTCC	2 cut(s)	565, 597
AluBI	AGCT	4 cut(s)	52, 103, 202, 359
AluI	AGCT	4 cut(s)	52, 103, 202, 359
Alw21I	GWGCWC	2 cut(s)	11, 660
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	1 cut(s)	240
AlwNI	CAGNNNCTG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	87
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
Asp700I	GAANNNNTTC	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	688
AsuC2I	CCSGG	1 cut(s)	483
AsuHPI	GGTGA	2 cut(s)	52, 377
AvaII	GGWCC	1 cut(s)	688
BanI	GGYRCC	1 cut(s)	631
BauI	CACGAG	1 cut(s)	378
Bbv12I	GWGCWC	2 cut(s)	11, 660
BbvCI	CCTCAGC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	99
BccI	CCATC	4 cut(s)	251, 281, 598, 668
BciT130I	CCWGG	2 cut(s)	636, 705
BcnI	CCSGG	1 cut(s)	483
BcoDI	GTCTC	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	645
BisI	GCNGC	2 cut(s)	85, 88
BlsI	GCNGC	2 cut(s)	86, 89
Bme1390I	CCNGG	3 cut(s)	483, 636, 705
Bme18I	GGWCC	1 cut(s)	688
BmgT120I	GGNCC	1 cut(s)	688
BmiI	GGNNCC	4 cut(s)	80, 559, 633, 690
BmrFI	CCNGG	3 cut(s)	483, 636, 705
BmsI	GCATC	2 cut(s)	99, 514
BpmI	CTGGAG	1 cut(s)	687
Bpu10I	CCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	2 cut(s)	38, 83
BpuMI	CCSGG	1 cut(s)	483
BsaAI	YACGTR	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 710
Bse1I	ACTGG	3 cut(s)	389, 435, 589
BseBI	CCWGG	2 cut(s)	636, 705
BseGI	GGATG	3 cut(s)	93, 609, 613
BseLI	CCNNNNNNNGG	2 cut(s)	352, 710
BseMII	CTCAG	2 cut(s)	171, 351
BseNI	ACTGG	3 cut(s)	389, 435, 589
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	99
BshFI	GGCC	1 cut(s)	158
BshNI	GGYRCC	1 cut(s)	631
BsiHKAI	GWGCWC	2 cut(s)	11, 660
BsiSI	CCGG	1 cut(s)	482
BslI	CCNNNNNNNGG	2 cut(s)	352, 710
BsmAI	GTCTC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	158
Bsp1286I	GDGCHC	2 cut(s)	11, 660
Bsp143I	GATC	3 cut(s)	42, 232, 278
BspACI	CCGC	2 cut(s)	82, 85
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	2 cut(s)	172, 352
BspLI	GGNNCC	4 cut(s)	80, 559, 633, 690
BspPI	GGATC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	631
BsrI	ACTGG	3 cut(s)	389, 435, 589
BssMI	GATC	3 cut(s)	42, 232, 278
BssSI	CACGAG	1 cut(s)	378
Bst2BI	CACGAG	1 cut(s)	378
Bst2UI	CCWGG	2 cut(s)	636, 705
Bst4CI	ACNGT	2 cut(s)	316, 410
BstBAI	YACGTR	1 cut(s)	250
BstC8I	GCNNGC	2 cut(s)	11, 666
BstDEI	CTNAG	3 cut(s)	180, 360, 418
BstF5I	GGATG	3 cut(s)	93, 609, 613
BstKTI	GATC	3 cut(s)	45, 235, 281
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	3 cut(s)	42, 232, 278
BstNI	CCWGG	2 cut(s)	636, 705
BstNSI	RCATGY	1 cut(s)	672
BstSCI	CCNGG	3 cut(s)	481, 634, 703
BstSFI	CTRYAG	1 cut(s)	645
BstV1I	GCAGC	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	158
BtsCI	GGATG	3 cut(s)	93, 609, 613
BtsIMutI	CAGTG	1 cut(s)	442
Cac8I	GCNNGC	2 cut(s)	11, 666
CaiI	CAGNNNCTG	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	688
CviAII	CATG	4 cut(s)	292, 548, 652, 669
DdeI	CTNAG	3 cut(s)	180, 360, 418
DpnI	GATC	3 cut(s)	44, 234, 280
DpnII	GATC	3 cut(s)	42, 232, 278
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
EaeI	YGGCCR	1 cut(s)	156
EciI	GGCGGA	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	688
EcoO109I	RGGNCCY	1 cut(s)	688
EcoRII	CCWGG	2 cut(s)	634, 703
FaeI	CATG	4 cut(s)	295, 551, 655, 672
FaiI	YATR	6 cut(s)	188, 272, 293, 549, 653, 670
FatI	CATG	4 cut(s)	291, 547, 651, 668
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	2 cut(s)	85, 88
FokI	GGATG	3 cut(s)	80, 616, 620
Fsp4HI	GCNGC	2 cut(s)	85, 88
GluI	GCNGC	2 cut(s)	85, 88
GsuI	CTGGAG	1 cut(s)	687
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	1 cut(s)	482
Hin1II	CATG	4 cut(s)	295, 551, 655, 672
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	1 cut(s)	611
HpaII	CCGG	1 cut(s)	482
HphI	GGTGA	2 cut(s)	52, 377
Hpy166II	GTNNAC	4 cut(s)	328, 368, 406, 584
Hpy188I	TCNGA	5 cut(s)	208, 256, 278, 460, 510
Hpy188III	TCNNGA	3 cut(s)	170, 221, 380
Hpy8I	GTNNAC	4 cut(s)	328, 368, 406, 584
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	167, 568
HpyCH4III	ACNGT	2 cut(s)	316, 410
HpyCH4IV	ACGT	1 cut(s)	249
HpyF3I	CTNAG	3 cut(s)	180, 360, 418
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	4 cut(s)	295, 551, 655, 672
Kzo9I	GATC	3 cut(s)	42, 232, 278
LmnI	GCTCC	3 cut(s)	84, 557, 655
Lsp1109I	GCAGC	1 cut(s)	99
LweI	GCATC	2 cut(s)	99, 514
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	2 cut(s)	528, 591
MalI	GATC	3 cut(s)	44, 234, 280
MboI	GATC	3 cut(s)	42, 232, 278
MboII	GAAGA	2 cut(s)	128, 578
MhlI	GDGCHC	2 cut(s)	11, 660
MluCI	AATT	4 cut(s)	119, 335, 441, 502
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	2 cut(s)	165, 552
MspI	CCGG	1 cut(s)	482
MspR9I	CCNGG	3 cut(s)	483, 636, 705
MvaI	CCWGG	2 cut(s)	636, 705
NciI	CCSGG	1 cut(s)	483
NdeII	GATC	3 cut(s)	42, 232, 278
NlaIII	CATG	4 cut(s)	295, 551, 655, 672
NlaIV	GGNNCC	4 cut(s)	80, 559, 633, 690
NspI	RCATGY	1 cut(s)	672
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	611
PflMI	CCANNNNNTGG	1 cut(s)	710
PkrI	GCNGC	2 cut(s)	86, 89
Ppu21I	YACGTR	1 cut(s)	250
PpuMI	RGGWCCY	1 cut(s)	688
Psp5II	RGGWCCY	1 cut(s)	688
Psp6I	CCWGG	2 cut(s)	634, 703
PspGI	CCWGG	2 cut(s)	634, 703
PspN4I	GGNNCC	4 cut(s)	80, 559, 633, 690
PspPI	GGNCC	1 cut(s)	688
PspPPI	RGGWCCY	1 cut(s)	688
PstNI	CAGNNNCTG	1 cut(s)	314
SaqAI	TTAA	2 cut(s)	165, 552
SatI	GCNGC	2 cut(s)	85, 88
Sau3AI	GATC	3 cut(s)	42, 232, 278
Sau96I	GGNCC	1 cut(s)	688
ScrFI	CCNGG	3 cut(s)	483, 636, 705
SduI	GDGCHC	2 cut(s)	11, 660
SfaNI	GCATC	2 cut(s)	99, 514
SfcI	CTRYAG	1 cut(s)	645
SinI	GGWCC	1 cut(s)	688
SmlI	CTYRAG	2 cut(s)	53, 98
SmoI	CTYRAG	2 cut(s)	53, 98
Sse9I	AATT	4 cut(s)	119, 335, 441, 502
SsiI	CCGC	2 cut(s)	82, 85
SspI	AATATT	1 cut(s)	133
StyD4I	CCNGG	3 cut(s)	481, 634, 703
TaaI	ACNGT	2 cut(s)	316, 410
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	72
TasI	AATT	4 cut(s)	119, 335, 441, 502
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	611
Tru1I	TTAA	2 cut(s)	165, 552
Tru9I	TTAA	2 cut(s)	165, 552
TscAI	CASTG	1 cut(s)	442
TseI	GCWGC	1 cut(s)	87
TspDTI	ATGAA	3 cut(s)	129, 203, 308
TspGWI	ACGGA	2 cut(s)	78, 313
TspRI	CASTG	1 cut(s)	442
Van91I	CCANNNNNTGG	1 cut(s)	710
VpaK11BI	GGWCC	1 cut(s)	688
XceI	RCATGY	1 cut(s)	672
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	327
XmnI	GAANNNNTTC	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.