Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006685.1

Orthogroup ID

OG0006828

Physical Location & Seq

Genomic Coordinates Reverse (-)

5355 .. 6351

Gene Structure 997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006685.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atggagtgctcccagaatctcaaggtaagcaaagaagaggtgatagcgaagctaaaggacgatggcgacttcgacaggctccgccgcaagatcattcaaaagctcaaaaacaacgaggaattacgcgaaaatattatttcaattgtgaagcaatcacaagcgcttaatcgcccaggtgccgagagcatgaaacccaggcaactctctgatgacatttatcaggaggttgggggcaaagtgatgagccagatatcggatgggttgtgggggataatcagatcaagtgatgcaatgcagagtgaaataagcgaaactgttcagtctgtttacaataaattggctaatccagatgggaatgcagacggtcagtcctccactcatgttgttcaagttcaagtcgagtctagtgataatggattagtcgttggtgctgccagtggagctgttgttggtgtgtccgacaatcatcaggatgacaataaccatgaggcacaacttccgcctcgtgaaaaaggagctatgacagagcaccgggaaatgttacgggataagatggataccgagggtgttgatcgcatagtggctcctggcgtttctacagacacggagcacaagcaggagtgtgatggtagcgacgaggaccccgatgtgcctcctggttttggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COMPASS-Shg1

Protein Analysis

222

Amino Acids

24.31

Weight (kDa)

4.68

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12530
fragaria_vesca	FvH4_5g01130
malus_domestica	MD04G1071100.v1.1 MD06G1069000.v1.1
prunus_persica	Prupe.5G086200_v2.0.a1
pyrus_communis	pycom06g06760
rosa_chinensis	RchiOBHm_Chr7g0199991 RchiOBHm_Chr7g0200011 RchiOBHm_Chr7g0200111 RchiOBHm_Chr7g0224151
rosa_laevigata	RLG00000003751
rosa_multiflora	Rmu_sc0003357.1_g000003 Rmu_sc0006685.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256290
rosa_rugosa	Rorug07G0057700 Rorug07G0057800.1 Rorug07G0057900
rosa_samantha	Rh7AG183200 Rh7AG486200 Rh7BG186200 Rh7CG192800 Rh7CG192900 Rh7DG186100 Rh7DG186200 Rh7DG187300
rosa_wichuraiana	Rw7G016040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AccII	CGCG	1 cut(s)	126
AciI	CCGC	3 cut(s)	82, 85, 500
AfeI	AGCGCT	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	253, 662
AgsI	TTSAA	4 cut(s)	98, 141, 389, 395
AhdI	GACNNNNNGTC	1 cut(s)	367
AjnI	CCWGG	4 cut(s)	172, 194, 586, 655
AluBI	AGCT	4 cut(s)	52, 103, 443, 518
AluI	AGCT	4 cut(s)	52, 103, 443, 518
Alw21I	GWGCWC	3 cut(s)	11, 531, 612
Aor51HI	AGCGCT	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	431
Asp700I	GAANNNNTTC	1 cut(s)	315
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	640
AsuC2I	CCSGG	1 cut(s)	533
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	640
BanI	GGYRCC	1 cut(s)	176
BauI	CACGAG	1 cut(s)	504
Bbv12I	GWGCWC	3 cut(s)	11, 531, 612
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	5 cut(s)	56, 251, 344, 547, 620
BciT130I	CCWGG	4 cut(s)	174, 196, 588, 657
BciVI	GTATCC	1 cut(s)	550
BcnI	CCSGG	1 cut(s)	533
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	597
BfoI	RGCGCY	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	550
BisI	GCNGC	2 cut(s)	85, 432
BlsI	GCNGC	2 cut(s)	86, 433
Bme1390I	CCNGG	5 cut(s)	174, 196, 533, 588, 657
Bme18I	GGWCC	1 cut(s)	640
BmeRI	GACNNNNNGTC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	640
BmiI	GGNNCC	4 cut(s)	80, 178, 585, 642
BmrFI	CCNGG	5 cut(s)	174, 196, 533, 588, 657
BmsI	GCATC	1 cut(s)	277
BpuEI	CTTGAG	1 cut(s)	5
BpuMI	CCSGG	1 cut(s)	533
BsaJI	CCNNGG	3 cut(s)	172, 194, 561
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 662
Bse1I	ACTGG	1 cut(s)	435
Bse3DI	GCAATG	1 cut(s)	297
BseBI	CCWGG	4 cut(s)	174, 196, 588, 657
BseDI	CCNNGG	3 cut(s)	172, 194, 561
BseGI	GGATG	2 cut(s)	262, 478
BseLI	CCNNNNNNNGG	2 cut(s)	253, 662
BseMI	GCAATG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	435
BseXI	GCAGC	1 cut(s)	418
Bsh1236I	CGCG	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	176
BsiHKAI	GWGCWC	3 cut(s)	11, 531, 612
BsiSI	CCGG	1 cut(s)	532
BslI	CCNNNNNNNGG	2 cut(s)	253, 662
BsmI	GAATGC	1 cut(s)	361
Bsp1286I	GDGCHC	3 cut(s)	11, 531, 612
Bsp143I	GATC	3 cut(s)	90, 278, 571
BspACI	CCGC	3 cut(s)	82, 85, 500
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	4 cut(s)	80, 178, 585, 642
BspT107I	GGYRCC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	435
BssECI	CCNNGG	3 cut(s)	172, 194, 561
BssMI	GATC	3 cut(s)	90, 278, 571
BssSI	CACGAG	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	504
Bst2UI	CCWGG	4 cut(s)	174, 196, 588, 657
Bst4CI	ACNGT	2 cut(s)	316, 365
Bst6I	CTCTTC	1 cut(s)	30
BstF5I	GGATG	2 cut(s)	262, 478
BstFNI	CGCG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	3 cut(s)	93, 281, 574
BstMBI	GATC	3 cut(s)	90, 278, 571
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstNI	CCWGG	4 cut(s)	174, 196, 588, 657
BstSCI	CCNGG	5 cut(s)	172, 194, 531, 586, 655
BstSFI	CTRYAG	1 cut(s)	597
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	418
BsuI	GTATCC	1 cut(s)	550
BtsCI	GGATG	2 cut(s)	262, 478
BtsIMutI	CAGTG	1 cut(s)	442
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	640
CspCI	CAANNNNNGTGG	2 cut(s)	364, 399
CviAII	CATG	3 cut(s)	187, 380, 485
CviJI	RGCY	8 cut(s)	52, 79, 103, 246, 341, 443, 518, 584
CviKI_1	RGCY	8 cut(s)	52, 79, 103, 246, 341, 443, 518, 584
DpnI	GATC	3 cut(s)	92, 280, 573
DpnII	GATC	3 cut(s)	90, 278, 571
DriI	GACNNNNNGTC	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	30
Eam1105I	GACNNNNNGTC	1 cut(s)	367
EarI	CTCTTC	1 cut(s)	30
EciI	GGCGGA	2 cut(s)	71, 489
Eco32I	GATATC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	640
Eco47III	AGCGCT	1 cut(s)	162
EcoO109I	RGGNCCY	1 cut(s)	640
EcoRII	CCWGG	4 cut(s)	172, 194, 586, 655
EcoRV	GATATC	1 cut(s)	252
FaeI	CATG	3 cut(s)	190, 383, 488
FaiI	YATR	5 cut(s)	188, 381, 486, 521, 578
FatI	CATG	3 cut(s)	186, 379, 484
Fnu4HI	GCNGC	2 cut(s)	85, 432
FokI	GGATG	2 cut(s)	269, 485
Fsp4HI	GCNGC	2 cut(s)	85, 432
FspBI	CTAG	1 cut(s)	405
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	2 cut(s)	85, 432
HaeII	RGCGCY	1 cut(s)	164
HapII	CCGG	1 cut(s)	532
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	3 cut(s)	190, 383, 488
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	2 cut(s)	16, 401
HpaII	CCGG	1 cut(s)	532
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	4 cut(s)	208, 256, 278, 460
Hpy188III	TCNNGA	4 cut(s)	221, 347, 470, 506
Hpy8I	GTNNAC	1 cut(s)	328
Hpy99I	CGWCG	1 cut(s)	638
HpyCH4III	ACNGT	2 cut(s)	316, 365
HpyCH4V	TGCA	3 cut(s)	290, 295, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
Hsp92II	CATG	3 cut(s)	190, 383, 488
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	3 cut(s)	90, 278, 571
LmnI	GCTCC	6 cut(s)	14, 84, 440, 515, 589, 607
Lsp1109I	GCAGC	1 cut(s)	418
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	540
MalI	GATC	3 cut(s)	92, 280, 573
MboI	GATC	3 cut(s)	90, 278, 571
MboII	GAAGA	1 cut(s)	47
MfeI	CAATTG	1 cut(s)	141
MhlI	GDGCHC	3 cut(s)	11, 531, 612
MluCI	AATT	3 cut(s)	119, 141, 335
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	1 cut(s)	483
MnlI	CCTC	9 cut(s)	31, 109, 217, 382, 481, 513, 556, 631, 663
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	2 cut(s)	165, 667
MslI	CAYNNNNRTG	1 cut(s)	471
MspI	CCGG	1 cut(s)	532
MspR9I	CCNGG	5 cut(s)	174, 196, 533, 588, 657
MunI	CAATTG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	4 cut(s)	174, 196, 588, 657
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	440
NciI	CCSGG	1 cut(s)	533
NdeII	GATC	3 cut(s)	90, 278, 571
NlaIII	CATG	3 cut(s)	190, 383, 488
NlaIV	GGNNCC	4 cut(s)	80, 178, 585, 642
NmeAIII	GCCGAG	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	642
PctI	GAATGC	1 cut(s)	361
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	2 cut(s)	86, 433
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
PpuMI	RGGWCCY	1 cut(s)	640
Psp5II	RGGWCCY	1 cut(s)	640
Psp6I	CCWGG	4 cut(s)	172, 194, 586, 655
PspGI	CCWGG	4 cut(s)	172, 194, 586, 655
PspN4I	GGNNCC	4 cut(s)	80, 178, 585, 642
PspPI	GGNCC	1 cut(s)	640
PspPPI	RGGWCCY	1 cut(s)	640
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	2 cut(s)	165, 667
SatI	GCNGC	2 cut(s)	85, 432
Sau3AI	GATC	3 cut(s)	90, 278, 571
Sau96I	GGNCC	1 cut(s)	640
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	5 cut(s)	174, 196, 533, 588, 657
SduI	GDGCHC	3 cut(s)	11, 531, 612
SetI	ASST	8 cut(s)	27, 42, 54, 105, 178, 228, 445, 520
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	1 cut(s)	597
SinI	GGWCC	1 cut(s)	640
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	3 cut(s)	119, 141, 335
SsiI	CCGC	3 cut(s)	82, 85, 500
SspI	AATATT	1 cut(s)	133
SspMI	CTAG	1 cut(s)	405
StyD4I	CCNGG	5 cut(s)	172, 194, 531, 586, 655
TaaI	ACNGT	2 cut(s)	316, 365
TaqI	TCGA	2 cut(s)	72, 399
TasI	AATT	3 cut(s)	119, 141, 335
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	2 cut(s)	165, 667
Tru9I	TTAA	2 cut(s)	165, 667
TscAI	CASTG	1 cut(s)	442
TseI	GCWGC	1 cut(s)	431
TspDTI	ATGAA	1 cut(s)	203
TspGWI	ACGGA	1 cut(s)	620
TspRI	CASTG	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	315
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.