Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006828

Physical Location & Seq

Genomic Coordinates Reverse (-)

9777563 .. 9779097

Gene Structure 1535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G086200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAGTGCTCGTACGTTCCCCAGGTTAGCAAAGAGGAGGTGATAGCGAAGCTAAAGGACGACGGAGACTTCGACAGACTCCGCCGCAAGATCATTCAAAAGCTCAAGCACAACGATGAATTGCGTGAAAATATTATTACAATTGTGAAGCAATCGGCAGCGCTTAATCGTGAAGGTGCCGAGAATATGAAACCCAGACAACTTTCTGATGACATTTATCAGGAGGTTGGGGACCAAGTAATGAGCCACATATCTGATGGTTTGTGGGGTATAATCAGATCAAGTGATGGCATGAAAAGTGAAATCACAGAAACTGTTGAATCTGTCTACAATAAATTAACTGACCCAAAAGGGAAAGCTGAGGGTGAAGCTTCCACTCGTGATGTTCCAGTTCACAAGGAAGCTGACAATAACGGTTTAGTTGTTGCTGCAGCCAAAGAAATTGATGATACGTTGTCTGGCAATGAGCCAAAAGCACCACCGGGATTTTCTTTATCTCATAATCATCTGATAAACAATAATGATGAGTTACAGCTACCTCTGCGTCATGTAAAAGGAGCCATGGAAGAACAAAAGGAAAGTTCACACCAGTTACAGGATAAGCTGAATGCCGATGATAACAGACTTGCGCCTGGATTTTCTACAGACATGGAGCACAAGCAGGCATGTGATGCTGGTGATGAGGATCCTGATGTGCCTCCTGGTTTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COMPASS-Shg1

Protein Analysis

238

Amino Acids

26.28

Weight (kDa)

4.85

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12530
fragaria_vesca	FvH4_5g01130
malus_domestica	MD04G1071100.v1.1 MD06G1069000.v1.1
prunus_persica	Prupe.5G086200_v2.0.a1
pyrus_communis	pycom06g06760
rosa_chinensis	RchiOBHm_Chr7g0199991 RchiOBHm_Chr7g0200011 RchiOBHm_Chr7g0200111 RchiOBHm_Chr7g0224151
rosa_laevigata	RLG00000003751
rosa_multiflora	Rmu_sc0003357.1_g000003 Rmu_sc0006685.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256290
rosa_rugosa	Rorug07G0057700 Rorug07G0057800.1 Rorug07G0057900
rosa_samantha	Rh7AG183200 Rh7AG486200 Rh7BG186200 Rh7CG192800 Rh7CG192900 Rh7DG186100 Rh7DG186200 Rh7DG187300
rosa_wichuraiana	Rw7G016040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	327
AciI	CCGC	2 cut(s)	82, 85
AclWI	GGATC	2 cut(s)	680, 693
AfaI	GTAC	1 cut(s)	14
AfeI	AGCGCT	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	595, 707
AgsI	TTSAA	2 cut(s)	98, 320
AjnI	CCWGG	3 cut(s)	21, 631, 700
AluBI	AGCT	7 cut(s)	52, 103, 359, 371, 404, 535, 604
AluI	AGCT	7 cut(s)	52, 103, 359, 371, 404, 535, 604
Alw21I	GWGCWC	2 cut(s)	11, 657
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	2 cut(s)	680, 693
AlwNI	CAGNNNCTG	1 cut(s)	314
Aor51HI	AGCGCT	1 cut(s)	162
ApeKI	GCWGC	3 cut(s)	158, 428, 431
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
AspLEI	GCGC	2 cut(s)	163, 631
AspS9I	GGNCC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	483
AsuHPI	GGTGA	3 cut(s)	52, 377, 689
AvaII	GGWCC	1 cut(s)	232
BamHI	GGATCC	1 cut(s)	685
BanI	GGYRCC	1 cut(s)	176
BauI	CACGAG	1 cut(s)	378
Bbv12I	GWGCWC	2 cut(s)	11, 657
BbvCI	CCTCAGC	1 cut(s)	360
BbvI	GCAGC	3 cut(s)	170, 415, 443
BccI	CCATC	2 cut(s)	251, 281
BciT130I	CCWGG	3 cut(s)	23, 633, 702
BcnI	CCSGG	1 cut(s)	483
BcoDI	GTCTC	1 cut(s)	60
BfmI	CTRYAG	2 cut(s)	429, 642
BfoI	RGCGCY	1 cut(s)	164
BisI	GCNGC	4 cut(s)	85, 159, 429, 432
BlsI	GCNGC	4 cut(s)	86, 160, 430, 433
Bme1390I	CCNGG	4 cut(s)	23, 483, 633, 702
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	4 cut(s)	178, 233, 559, 687
BmrFI	CCNGG	4 cut(s)	23, 483, 633, 702
BmsI	GCATC	1 cut(s)	661
Bpu10I	CCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	483
BsaBI	GATNNNNATC	1 cut(s)	684
BsaJI	CCNNGG	2 cut(s)	21, 561
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	595, 707
Bse1I	ACTGG	2 cut(s)	389, 589
Bse3DI	GCAATG	1 cut(s)	469
Bse8I	GATNNNNATC	1 cut(s)	684
BseBI	CCWGG	3 cut(s)	23, 633, 702
BseDI	CCNNGG	2 cut(s)	21, 561
BseJI	GATNNNNATC	1 cut(s)	684
BseLI	CCNNNNNNNGG	2 cut(s)	595, 707
BseMI	GCAATG	1 cut(s)	469
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	2 cut(s)	389, 589
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	3 cut(s)	170, 415, 443
BshNI	GGYRCC	1 cut(s)	176
BsiHKAI	GWGCWC	2 cut(s)	11, 657
BsiSI	CCGG	1 cut(s)	482
BsiWI	CGTACG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	2 cut(s)	595, 707
BsmAI	GTCTC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	613
Bsp1286I	GDGCHC	2 cut(s)	11, 657
Bsp143I	GATC	3 cut(s)	90, 278, 685
Bsp19I	CCATGG	1 cut(s)	561
BspACI	CCGC	2 cut(s)	82, 85
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	4 cut(s)	178, 233, 559, 687
BspMAI	CTGCAG	1 cut(s)	433
BspPI	GGATC	2 cut(s)	680, 693
BspT107I	GGYRCC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	469
BsrI	ACTGG	2 cut(s)	389, 589
BssECI	CCNNGG	2 cut(s)	21, 561
BssMI	GATC	3 cut(s)	90, 278, 685
BssSI	CACGAG	1 cut(s)	378
BssT1I	CCWWGG	1 cut(s)	561
Bst2BI	CACGAG	1 cut(s)	378
Bst2UI	CCWGG	3 cut(s)	23, 633, 702
Bst4CI	ACNGT	2 cut(s)	316, 416
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstC8I	GCNNGC	1 cut(s)	663
BstDEI	CTNAG	1 cut(s)	360
BstDSI	CCRYGG	1 cut(s)	561
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	2 cut(s)	163, 631
BstKTI	GATC	3 cut(s)	93, 281, 688
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	3 cut(s)	90, 278, 685
BstMWI	GCNNNNNNNGC	2 cut(s)	541, 671
BstNI	CCWGG	3 cut(s)	23, 633, 702
BstNSI	RCATGY	1 cut(s)	669
BstSCI	CCNGG	4 cut(s)	21, 481, 631, 700
BstSFI	CTRYAG	2 cut(s)	429, 642
BstV1I	GCAGC	3 cut(s)	170, 415, 443
BstX2I	RGATCY	1 cut(s)	685
BstYI	RGATCY	1 cut(s)	685
BtgI	CCRYGG	1 cut(s)	561
Cac8I	GCNNGC	1 cut(s)	663
CaiI	CAGNNNCTG	1 cut(s)	314
CfoI	GCGC	2 cut(s)	163, 631
Cfr13I	GGNCC	1 cut(s)	232
CseI	GACGC	1 cut(s)	533
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	5 cut(s)	292, 548, 562, 649, 666
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	3 cut(s)	92, 280, 687
DpnII	GATC	3 cut(s)	90, 278, 685
EciI	GGCGGA	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	561
Eco47I	GGWCC	1 cut(s)	232
Eco47III	AGCGCT	1 cut(s)	162
EcoRII	CCWGG	3 cut(s)	21, 631, 700
EcoT14I	CCWWGG	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	5 cut(s)	295, 551, 565, 652, 669
FaiI	YATR	9 cut(s)	188, 251, 272, 293, 501, 549, 563, 650, 667
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	5 cut(s)	291, 547, 561, 648, 665
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	4 cut(s)	85, 159, 429, 432
Fsp4HI	GCNGC	4 cut(s)	85, 159, 429, 432
GlaI	GCGC	2 cut(s)	162, 630
GluI	GCNGC	4 cut(s)	85, 159, 429, 432
HaeII	RGCGCY	1 cut(s)	164
HapII	CCGG	1 cut(s)	482
HgaI	GACGC	1 cut(s)	533
HhaI	GCGC	2 cut(s)	163, 631
Hin1II	CATG	5 cut(s)	295, 551, 565, 652, 669
Hin6I	GCGC	2 cut(s)	161, 629
HinP1I	GCGC	2 cut(s)	161, 629
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	2 cut(s)	78, 320
HpaII	CCGG	1 cut(s)	482
HphI	GGTGA	3 cut(s)	52, 377, 689
Hpy166II	GTNNAC	3 cut(s)	328, 394, 584
Hpy188I	TCNGA	4 cut(s)	208, 256, 278, 510
Hpy188III	TCNNGA	4 cut(s)	170, 221, 380, 689
Hpy8I	GTNNAC	3 cut(s)	328, 394, 584
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	2 cut(s)	316, 416
HpyCH4IV	ACGT	2 cut(s)	15, 452
HpyCH4V	TGCA	1 cut(s)	431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	541, 671
HpyF3I	CTNAG	1 cut(s)	360
HpySE526I	ACGT	2 cut(s)	15, 452
Hsp92II	CATG	5 cut(s)	295, 551, 565, 652, 669
HspAI	GCGC	2 cut(s)	161, 629
Kzo9I	GATC	3 cut(s)	90, 278, 685
LmnI	GCTCC	2 cut(s)	557, 652
Lsp1109I	GCAGC	3 cut(s)	170, 415, 443
LweI	GCATC	1 cut(s)	661
MaeII	ACGT	2 cut(s)	15, 452
MaeIII	GTNAC	2 cut(s)	528, 591
MalI	GATC	3 cut(s)	92, 280, 687
MboI	GATC	3 cut(s)	90, 278, 685
MboII	GAAGA	1 cut(s)	578
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	1 cut(s)	685
MhlI	GDGCHC	2 cut(s)	11, 657
MluCI	AATT	4 cut(s)	119, 141, 335, 441
MlyI	GAGTC	1 cut(s)	72
MnlI	CCTC	7 cut(s)	28, 31, 217, 355, 549, 676, 708
MseI	TTAA	2 cut(s)	165, 338
MslI	CAYNNNNRTG	1 cut(s)	114
MspI	CCGG	1 cut(s)	482
MspR9I	CCNGG	4 cut(s)	23, 483, 633, 702
MunI	CAATTG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	613
MvaI	CCWGG	3 cut(s)	23, 633, 702
MwoI	GCNNNNNNNGC	2 cut(s)	541, 671
NciI	CCSGG	1 cut(s)	483
NcoI	CCATGG	1 cut(s)	561
NdeII	GATC	3 cut(s)	90, 278, 685
NlaIII	CATG	5 cut(s)	295, 551, 565, 652, 669
NlaIV	GGNNCC	4 cut(s)	178, 233, 559, 687
NmeAIII	GCCGAG	1 cut(s)	205
NspI	RCATGY	1 cut(s)	669
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PctI	GAATGC	1 cut(s)	613
PfeI	GAWTC	1 cut(s)	320
Pfl23II	CGTACG	1 cut(s)	12
PkrI	GCNGC	4 cut(s)	86, 160, 430, 433
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
Psp6I	CCWGG	3 cut(s)	21, 631, 700
PspGI	CCWGG	3 cut(s)	21, 631, 700
PspLI	CGTACG	1 cut(s)	12
PspN4I	GGNNCC	4 cut(s)	178, 233, 559, 687
PspPI	GGNCC	1 cut(s)	232
PstI	CTGCAG	1 cut(s)	433
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	685
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	165, 338
SatI	GCNGC	4 cut(s)	85, 159, 429, 432
Sau3AI	GATC	3 cut(s)	90, 278, 685
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	4 cut(s)	23, 483, 633, 702
SduI	GDGCHC	2 cut(s)	11, 657
SfaNI	GCATC	1 cut(s)	661
SfcI	CTRYAG	2 cut(s)	429, 642
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	4 cut(s)	119, 141, 335, 441
SsiI	CCGC	2 cut(s)	82, 85
SspI	AATATT	1 cut(s)	133
StyD4I	CCNGG	4 cut(s)	21, 481, 631, 700
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	2 cut(s)	316, 416
TaiI	ACGT	2 cut(s)	18, 455
TaqI	TCGA	1 cut(s)	72
TasI	AATT	4 cut(s)	119, 141, 335, 441
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	2 cut(s)	165, 338
Tru9I	TTAA	2 cut(s)	165, 338
TseI	GCWGC	3 cut(s)	158, 428, 431
TspDTI	ATGAA	3 cut(s)	132, 203, 308
TspGWI	ACGGA	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	232
XceI	RCATGY	1 cut(s)	669
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.