Rh7CG192800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0006828
Physical Location & Seq
Forward (+)
17026614 .. 17027813
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG192800.1

Sequence Viewer

Length: 426 bp
ATGAAAAGCACCTCGGACTCAGATTGCTCCGGGTTCGCCATTGCTAAGGAAGAGGGTATGGATTGTTCGCCGGCGTTCATGTCGAAGAAGGCTGGGCCGGCCACTAGAAGTACTACTGACGATTCGGTGGGCTGGTCGCCGGGGTTCGTGTTGAGAAAGGGGGCTCCAAAAATGACCTCAGAGAGCGCCGGGTCCGTCATTGATGACGACGATCCGGTGGGTCGTGTTGGTGCTGGAAAAGTATTGGTCTTTTGGACTCAGAAATTGGGGTCTTTGGAAGCTGGGGACGCACGAGTATATATATACACGGCGGCAAGTGGGTTTCCAAGTGAGCCACGAAATAAACTAGGACGAATCAACACCGTACAGATCTCCAGTTTGAATAGTGATAGTGGATTAGTGGGTCCGCCACCTTTGGCCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

14.58

Weight (kDa)

5.38

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 311, 407
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 2 cut(s) 99, 417
AfaI GTAC 2 cut(s) 112, 366
AfiI CCNNNNNNNGG 1 cut(s) 419
AgsI TTSAA 1 cut(s) 382
AluBI AGCT 1 cut(s) 281
AluI AGCT 1 cut(s) 281
AlwI GGATC 1 cut(s) 206
AoxI GGCC 3 cut(s) 95, 99, 417
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 3 cut(s) 95, 192, 404
AsuC2I CCSGG 4 cut(s) 31, 141, 190, 421
AvaII GGWCC 2 cut(s) 192, 404
BanII GRGCYC 1 cut(s) 166
BauI CACGAG 1 cut(s) 291
BceAI ACGGC 1 cut(s) 324
BcnI CCSGG 4 cut(s) 31, 141, 190, 421
BfaI CTAG 2 cut(s) 105, 347
BfoI RGCGCY 1 cut(s) 189
BglII AGATCT 1 cut(s) 369
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
BmcAI AGTACT 1 cut(s) 112
Bme1390I CCNGG 4 cut(s) 31, 141, 190, 421
Bme18I GGWCC 2 cut(s) 192, 404
BmgT120I GGNCC 3 cut(s) 95, 192, 404
BmiI GGNNCC 3 cut(s) 165, 193, 405
BmrFI CCNGG 4 cut(s) 31, 141, 190, 421
BpmI CTGGAG 1 cut(s) 358
Bpu10I CCTNAGC 1 cut(s) 45
BpuMI CCSGG 4 cut(s) 31, 141, 190, 421
BsaJI CCNNGG 2 cut(s) 12, 140
BsaWI WCCGGW 1 cut(s) 214
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse118I RCCGGY 2 cut(s) 70, 97
Bse1I ACTGG 1 cut(s) 375
Bse3DI GCAATG 1 cut(s) 39
BseDI CCNNGG 2 cut(s) 12, 140
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 3 cut(s) 33, 192, 272
BseNI ACTGG 1 cut(s) 375
BseYI CCCAGC 2 cut(s) 92, 281
BshFI GGCC 3 cut(s) 97, 101, 419
BsiSI CCGG 7 cut(s) 30, 71, 98, 140, 189, 215, 420
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 3 cut(s) 97, 101, 419
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 2 cut(s) 211, 369
BspACI CCGC 2 cut(s) 311, 407
BspANI GGCC 3 cut(s) 97, 101, 419
BspCNI CTCAG 3 cut(s) 32, 191, 271
BspLI GGNNCC 3 cut(s) 165, 193, 405
BspPI GGATC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 39
BsrFI RCCGGY 2 cut(s) 70, 97
BsrI ACTGG 1 cut(s) 375
BssAI RCCGGY 2 cut(s) 70, 97
BssECI CCNNGG 2 cut(s) 12, 140
BssMI GATC 2 cut(s) 211, 369
BssSI CACGAG 1 cut(s) 291
Bst2BI CACGAG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 1 cut(s) 45
BstC8I GCNNGC 2 cut(s) 72, 99
BstDEI CTNAG 4 cut(s) 19, 45, 178, 258
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 2 cut(s) 214, 372
BstMBI GATC 2 cut(s) 211, 369
BstMWI GCNNNNNNNGC 2 cut(s) 98, 287
BstSCI CCNGG 4 cut(s) 29, 139, 188, 419
BstX2I RGATCY 1 cut(s) 369
BstYI RGATCY 1 cut(s) 369
BsuRI GGCC 3 cut(s) 97, 101, 419
Cac8I GCNNGC 2 cut(s) 72, 99
CfoI GCGC 1 cut(s) 188
Cfr10I RCCGGY 2 cut(s) 70, 97
Cfr13I GGNCC 3 cut(s) 95, 192, 404
CseI GACGC 1 cut(s) 296
Csp6I GTAC 2 cut(s) 111, 365
CviAII CATG 1 cut(s) 79
CviJI RGCY 8 cut(s) 92, 97, 101, 132, 164, 281, 334, 419
CviKI_1 RGCY 8 cut(s) 92, 97, 101, 132, 164, 281, 334, 419
CviQI GTAC 2 cut(s) 111, 365
DdeI CTNAG 4 cut(s) 19, 45, 178, 258
DpnI GATC 2 cut(s) 213, 371
DpnII GATC 2 cut(s) 211, 369
EaeI YGGCCR 2 cut(s) 99, 417
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
EciI GGCGGA 1 cut(s) 396
Eco24I GRGCYC 1 cut(s) 166
Eco47I GGWCC 2 cut(s) 192, 404
EcoT38I GRGCYC 1 cut(s) 166
FaeI CATG 1 cut(s) 82
FaiI YATR 6 cut(s) 59, 80, 298, 300, 302, 304
FaqI GGGAC 1 cut(s) 299
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 312
FriOI GRGCYC 1 cut(s) 166
FseI GGCCGGCC 1 cut(s) 101
Fsp4HI GCNGC 1 cut(s) 312
FspBI CTAG 2 cut(s) 105, 347
GlaI GCGC 1 cut(s) 187
GluI GCNGC 1 cut(s) 312
GsaI CCCAGC 2 cut(s) 96, 285
GsuI CTGGAG 1 cut(s) 358
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 3 cut(s) 97, 101, 419
HapII CCGG 7 cut(s) 30, 71, 98, 140, 189, 215, 420
HgaI GACGC 1 cut(s) 296
HhaI GCGC 1 cut(s) 188
Hin1II CATG 1 cut(s) 82
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HinfI GANTC 4 cut(s) 17, 122, 256, 354
HpaII CCGG 7 cut(s) 30, 71, 98, 140, 189, 215, 420
Hpy188I TCNGA 4 cut(s) 16, 22, 181, 261
Hpy99I CGWCG 1 cut(s) 212
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 364
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 287
HpyF3I CTNAG 4 cut(s) 19, 45, 178, 258
Hsp92II CATG 1 cut(s) 82
HspAI GCGC 1 cut(s) 186
KroI GCCGGC 2 cut(s) 70, 97
KroNI GCCGGC 2 cut(s) 72, 99
Kzo9I GATC 2 cut(s) 211, 369
LmnI GCTCC 2 cut(s) 32, 169
MaeI CTAG 2 cut(s) 105, 347
MalI GATC 2 cut(s) 213, 371
MboI GATC 2 cut(s) 211, 369
MboII GAAGA 2 cut(s) 62, 97
MflI RGATCY 1 cut(s) 369
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 1 cut(s) 263
MlyI GAGTC 2 cut(s) 11, 250
MnlI CCTC 3 cut(s) 22, 46, 187
MreI CGCCGGCG 1 cut(s) 70
MroNI GCCGGC 2 cut(s) 70, 97
MspI CCGG 7 cut(s) 30, 71, 98, 140, 189, 215, 420
MspR9I CCNGG 4 cut(s) 31, 141, 190, 421
MwoI GCNNNNNNNGC 2 cut(s) 98, 287
NaeI GCCGGC 2 cut(s) 72, 99
NciI CCSGG 4 cut(s) 31, 141, 190, 421
NdeII GATC 2 cut(s) 211, 369
NgoMIV GCCGGC 2 cut(s) 70, 97
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 3 cut(s) 165, 193, 405
PdiI GCCGGC 2 cut(s) 72, 99
PfeI GAWTC 2 cut(s) 122, 354
PkrI GCNGC 1 cut(s) 313
PleI GAGTC 2 cut(s) 11, 250
PpsI GAGTC 2 cut(s) 11, 250
PspFI CCCAGC 2 cut(s) 92, 281
PspN4I GGNNCC 3 cut(s) 165, 193, 405
PspPI GGNCC 3 cut(s) 95, 192, 404
PsrI GAACNNNNNNTAC 2 cut(s) 49, 81
PsuI RGATCY 1 cut(s) 369
RigI GGCCGGCC 1 cut(s) 101
RsaI GTAC 2 cut(s) 112, 366
RsaNI GTAC 2 cut(s) 111, 365
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 2 cut(s) 211, 369
Sau96I GGNCC 3 cut(s) 95, 192, 404
ScaI AGTACT 1 cut(s) 112
SchI GAGTC 2 cut(s) 11, 250
ScrFI CCNGG 4 cut(s) 31, 141, 190, 421
SduI GDGCHC 1 cut(s) 166
SetI ASST 4 cut(s) 14, 179, 283, 415
SgrAI CRCCGGYG 1 cut(s) 70
SinI GGWCC 2 cut(s) 192, 404
Sse9I AATT 1 cut(s) 263
SsiI CCGC 2 cut(s) 311, 407
SspMI CTAG 2 cut(s) 105, 347
StyD4I CCNGG 4 cut(s) 29, 139, 188, 419
TaaI ACNGT 1 cut(s) 364
TaqI TCGA 1 cut(s) 83
TasI AATT 1 cut(s) 263
TatI WGTACW 1 cut(s) 110
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 2 cut(s) 122, 354
TspDTI ATGAA 2 cut(s) 17, 67
TspGWI ACGGA 1 cut(s) 184
VpaK11BI GGWCC 2 cut(s) 192, 404
XspI CTAG 2 cut(s) 105, 347
ZrmI AGTACT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.