FvH4_5g01130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0006828
Physical Location & Seq
Reverse (-)
694568 .. 695496
929 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g01130.t1

Sequence Viewer

Length: 699 bp
ATGGAGAATCTCAAGGTCAGCAAAGAGGAGGTGATAGCGAAGCTTAAAGACGACGGCGACTTTGACCGCCTCCGCCGCAAGATTATCCAGAAGCTCAAAACCAACGAGGAATTACGCGAGAATATTGTTTCAATTGTGAAGCAGTCGGCAGCGCTGAACCGCCCAGGCGCTGAGAACATGAAGCCCAGGCAGCTCTCTGATGACATTCACCAGGAGGTTGGGGAGAGTGTAATGAGCCGGATTTCGGATGGGCTGTGGGGGATAATCAGGTCGAGTGATGGAATGCAGAGTGAGATAAGCGAAACTGTAAGGTCTGTTTACGATAAATTGGCTAATCCAGAGGACAATGTAGAGGATGGATCAAAGGGCTGTGTTGGTGAGGTTCAAGTCAAGTGTAGTGATGATGGATTAGTTGTTGGTGCTGTGAGTGGAGGTGTTGATGGTGTGTCTCACAATGAGATGAAGGAACCGCCGGGGTTTTCTGTGGCGTACAATCATGAGGGTGAAAATAACCATGAGGTAGAGCGTCTGCATTGTGAGAAAGGAGGCGTGATAGAGCAGCGGGGAACGTTGCAGGATAAGATGGAAACTGAGGATGTGGATCGTGTGGTGGCCCCTGGCTTTTCTACAGACATGGAGCACAAGGAGGGATGTGATGGTAGCGATGAGGACCCTGATGTGCCTCCTGGTTTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COMPASS-Shg1

Protein Analysis

233

Amino Acids

25.45

Weight (kDa)

4.64

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COMPASS-Shg1 PF05205 12 - 104 4.1e-07 COMPASS (Complex proteins associated with Set1p) component shg1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 117
AciI CCGC 6 cut(s) 67, 73, 76, 160, 470, 562
AclI AACGTT 1 cut(s) 569
AclWI GGATC 2 cut(s) 367, 609
AfaI GTAC 1 cut(s) 491
AfeI AGCGCT 1 cut(s) 153
AfiI CCNNNNNNNGG 2 cut(s) 244, 692
AgsI TTSAA 2 cut(s) 132, 386
AjnI CCWGG 5 cut(s) 163, 185, 210, 616, 685
AluBI AGCT 3 cut(s) 43, 94, 193
AluI AGCT 3 cut(s) 43, 94, 193
Alw21I GWGCWC 1 cut(s) 642
Alw26I GTCTC 1 cut(s) 453
AlwI GGATC 2 cut(s) 367, 609
AlwNI CAGNNNCTG 1 cut(s) 170
Aor51HI AGCGCT 1 cut(s) 153
AoxI GGCC 1 cut(s) 612
ApeKI GCWGC 3 cut(s) 149, 190, 559
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AspLEI GCGC 2 cut(s) 154, 170
AspS9I GGNCC 2 cut(s) 613, 670
AsuC2I CCSGG 1 cut(s) 474
AsuHPI GGTGA 4 cut(s) 43, 200, 389, 515
AvaII GGWCC 1 cut(s) 670
Bbv12I GWGCWC 1 cut(s) 642
BbvI GCAGC 3 cut(s) 161, 202, 571
BccI CCATC 7 cut(s) 242, 272, 350, 398, 434, 577, 650
BceAI ACGGC 1 cut(s) 70
BciT130I CCWGG 5 cut(s) 165, 187, 212, 618, 687
BcnI CCSGG 1 cut(s) 474
BcoDI GTCTC 1 cut(s) 453
BfmI CTRYAG 1 cut(s) 627
BfoI RGCGCY 2 cut(s) 155, 171
BisI GCNGC 4 cut(s) 76, 150, 191, 560
BlsI GCNGC 4 cut(s) 77, 151, 192, 561
Bme1390I CCNGG 6 cut(s) 165, 187, 212, 474, 618, 687
Bme18I GGWCC 1 cut(s) 670
BmgT120I GGNCC 2 cut(s) 613, 670
BmiI GGNNCC 3 cut(s) 468, 615, 672
BmrFI CCNGG 6 cut(s) 165, 187, 212, 474, 618, 687
BpuMI CCSGG 1 cut(s) 474
BsaBI GATNNNNATC 1 cut(s) 600
BsaJI CCNNGG 4 cut(s) 163, 185, 473, 616
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 692
Bse8I GATNNNNATC 1 cut(s) 600
BseBI CCWGG 5 cut(s) 165, 187, 212, 618, 687
BseDI CCNNGG 4 cut(s) 163, 185, 473, 616
BseGI GGATG 4 cut(s) 253, 361, 601, 656
BseJI GATNNNNATC 1 cut(s) 600
BseLI CCNNNNNNNGG 2 cut(s) 244, 692
BseMII CTCAG 2 cut(s) 162, 582
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 3 cut(s) 161, 202, 571
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 1 cut(s) 614
BsiHKAI GWGCWC 1 cut(s) 642
BsiSI CCGG 2 cut(s) 238, 473
BslI CCNNNNNNNGG 2 cut(s) 244, 692
BsmAI GTCTC 1 cut(s) 453
BsmI GAATGC 1 cut(s) 288
BsnI GGCC 1 cut(s) 614
Bsp1286I GDGCHC 1 cut(s) 642
Bsp143I GATC 2 cut(s) 359, 601
BspACI CCGC 6 cut(s) 67, 73, 76, 160, 470, 562
BspANI GGCC 1 cut(s) 614
BspCNI CTCAG 2 cut(s) 163, 583
BspFNI CGCG 1 cut(s) 117
BspHI TCATGA 1 cut(s) 496
BspLI GGNNCC 3 cut(s) 468, 615, 672
BspPI GGATC 2 cut(s) 367, 609
BssECI CCNNGG 4 cut(s) 163, 185, 473, 616
BssMI GATC 2 cut(s) 359, 601
Bst2UI CCWGG 5 cut(s) 165, 187, 212, 618, 687
Bst4CI ACNGT 1 cut(s) 307
BstDEI CTNAG 2 cut(s) 171, 591
BstF5I GGATG 4 cut(s) 253, 361, 601, 656
BstFNI CGCG 1 cut(s) 117
BstH2I RGCGCY 2 cut(s) 155, 171
BstHHI GCGC 2 cut(s) 154, 170
BstKTI GATC 2 cut(s) 362, 604
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 2 cut(s) 359, 601
BstMWI GCNNNNNNNGC 2 cut(s) 75, 190
BstNI CCWGG 5 cut(s) 165, 187, 212, 618, 687
BstSCI CCNGG 6 cut(s) 163, 185, 210, 472, 616, 685
BstSFI CTRYAG 1 cut(s) 627
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 3 cut(s) 161, 202, 571
BstXI CCANNNNNNTGG 1 cut(s) 218
BsuRI GGCC 1 cut(s) 614
BtgZI GCGATG 1 cut(s) 678
BtsCI GGATG 4 cut(s) 253, 361, 601, 656
CaiI CAGNNNCTG 1 cut(s) 170
CciI TCATGA 1 cut(s) 496
CfoI GCGC 2 cut(s) 154, 170
Cfr13I GGNCC 2 cut(s) 613, 670
CseI GACGC 1 cut(s) 515
Csp6I GTAC 1 cut(s) 490
CviAII CATG 4 cut(s) 178, 497, 515, 634
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 2 cut(s) 171, 591
DpnI GATC 2 cut(s) 361, 603
DpnII GATC 2 cut(s) 359, 601
EciI GGCGGA 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 670
Eco47III AGCGCT 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 670
EcoRII CCWGG 5 cut(s) 163, 185, 210, 616, 685
FaeI CATG 4 cut(s) 181, 500, 518, 637
FaiI YATR 4 cut(s) 179, 498, 516, 635
FatI CATG 4 cut(s) 177, 496, 514, 633
FauI CCCGC 1 cut(s) 555
Fnu4HI GCNGC 4 cut(s) 76, 150, 191, 560
FokI GGATG 4 cut(s) 260, 368, 608, 663
Fsp4HI GCNGC 4 cut(s) 76, 150, 191, 560
GlaI GCGC 2 cut(s) 153, 169
GluI GCNGC 4 cut(s) 76, 150, 191, 560
HaeII RGCGCY 2 cut(s) 155, 171
HaeIII GGCC 1 cut(s) 614
HapII CCGG 2 cut(s) 238, 473
HgaI GACGC 1 cut(s) 515
HhaI GCGC 2 cut(s) 154, 170
Hin1II CATG 4 cut(s) 181, 500, 518, 637
Hin6I GCGC 2 cut(s) 152, 168
HinP1I GCGC 2 cut(s) 152, 168
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 1 cut(s) 7
HpaII CCGG 2 cut(s) 238, 473
HphI GGTGA 4 cut(s) 43, 200, 389, 515
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 2 cut(s) 199, 247
Hpy188III TCNNGA 3 cut(s) 88, 338, 497
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 457
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4IV ACGT 1 cut(s) 569
HpyCH4V TGCA 3 cut(s) 286, 532, 574
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 190
HpyF3I CTNAG 2 cut(s) 171, 591
HpySE526I ACGT 1 cut(s) 569
Hsp92II CATG 4 cut(s) 181, 500, 518, 637
HspAI GCGC 2 cut(s) 152, 168
Kzo9I GATC 2 cut(s) 359, 601
LmnI GCTCC 1 cut(s) 637
Lsp1109I GCAGC 3 cut(s) 161, 202, 571
MaeII ACGT 1 cut(s) 569
MalI GATC 2 cut(s) 361, 603
MboI GATC 2 cut(s) 359, 601
MfeI CAATTG 1 cut(s) 132
MhlI GDGCHC 1 cut(s) 642
MluCI AATT 3 cut(s) 110, 132, 326
MseI TTAA 2 cut(s) 45, 697
MslI CAYNNNNRTG 1 cut(s) 501
MspA1I CMGCKG 1 cut(s) 562
MspI CCGG 2 cut(s) 238, 473
MspR9I CCNGG 6 cut(s) 165, 187, 212, 474, 618, 687
MunI CAATTG 1 cut(s) 132
Mva1269I GAATGC 1 cut(s) 288
MvaI CCWGG 5 cut(s) 165, 187, 212, 618, 687
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 75, 190
NciI CCSGG 1 cut(s) 474
NdeII GATC 2 cut(s) 359, 601
NlaIII CATG 4 cut(s) 181, 500, 518, 637
NlaIV GGNNCC 3 cut(s) 468, 615, 672
PagI TCATGA 1 cut(s) 496
PctI GAATGC 1 cut(s) 288
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 4 cut(s) 77, 151, 192, 561
PpuMI RGGWCCY 1 cut(s) 670
Psp1406I AACGTT 1 cut(s) 569
Psp5II RGGWCCY 1 cut(s) 670
Psp6I CCWGG 5 cut(s) 163, 185, 210, 616, 685
PspGI CCWGG 5 cut(s) 163, 185, 210, 616, 685
PspN4I GGNNCC 3 cut(s) 468, 615, 672
PspPI GGNCC 2 cut(s) 613, 670
PspPPI RGGWCCY 1 cut(s) 670
PstNI CAGNNNCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
RseI CAYNNNNRTG 1 cut(s) 501
SaqAI TTAA 2 cut(s) 45, 697
SatI GCNGC 4 cut(s) 76, 150, 191, 560
Sau3AI GATC 2 cut(s) 359, 601
Sau96I GGNCC 2 cut(s) 613, 670
ScrFI CCNGG 6 cut(s) 165, 187, 212, 474, 618, 687
SduI GDGCHC 1 cut(s) 642
SfcI CTRYAG 1 cut(s) 627
SinI GGWCC 1 cut(s) 670
SmiMI CAYNNNNRTG 1 cut(s) 501
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 3 cut(s) 110, 132, 326
SsiI CCGC 6 cut(s) 67, 73, 76, 160, 470, 562
SspI AATATT 1 cut(s) 124
StyD4I CCNGG 6 cut(s) 163, 185, 210, 472, 616, 685
TaaI ACNGT 1 cut(s) 307
TaiI ACGT 1 cut(s) 572
TaqI TCGA 1 cut(s) 272
TasI AATT 3 cut(s) 110, 132, 326
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 45, 697
Tru9I TTAA 2 cut(s) 45, 697
TseI GCWGC 3 cut(s) 149, 190, 559
TspDTI ATGAA 2 cut(s) 194, 476
VpaK11BI GGWCC 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.