Rh7BG186200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006828
Physical Location & Seq
Forward (+)
14937095 .. 14942618
5524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG186200.1

Sequence Viewer

Length: 474 bp
ATGAAACCCAGGCAACTCTCTGATGACATTTACCAGGAGGTTGGGGGCAAAGTGATGAGCCAGATATCGGATGGGTTGTGGGGGATAATCAGATCAAGTGATGCAATGCAGAGTGAAATAAGCGAAACTGTTCAGTCTGTTTACAATAAATTGGCTAATCCACAAGGGAATGCAGAGGGTCACTCCTCCACTCATGTTGTTCAAGTTCAACTCGAGTCTAGTGATAATGGATTAGTCGCTGGTGCTGCCGGTGGAGCTGTGTCCGACAATCATCAGGATGACAATAACCATGAGGCACAACTTCCGCCTCCTGAAAAAGGAGCTATGACAGAGCACCGGGAAATGTTACAGGATAAGATGGATACCGAGGGTGTTGATCGCGTAGTGGCTCCTGGCGTTTCTACAGACACGGAGCGCAAGCAGGAATGTGATGGTAGCGATGAGGACCCCGATGTGCCTCCTGGTTTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COMPASS-Shg1

Protein Analysis

157

Amino Acids

16.82

Weight (kDa)

4.33

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 381
AciI CCGC 1 cut(s) 305
AfiI CCNNNNNNNGG 3 cut(s) 67, 317, 467
AgsI TTSAA 2 cut(s) 203, 209
AjnI CCWGG 4 cut(s) 8, 33, 391, 460
AluBI AGCT 2 cut(s) 257, 323
AluI AGCT 2 cut(s) 257, 323
Alw21I GWGCWC 1 cut(s) 336
Ama87I CYCGRG 1 cut(s) 212
ApeKI GCWGC 1 cut(s) 245
Asp700I GAANNNNTTC 1 cut(s) 129
AspLEI GCGC 1 cut(s) 417
AspS9I GGNCC 1 cut(s) 445
AsuC2I CCSGG 1 cut(s) 338
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 1 cut(s) 445
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 232
BccI CCATC 3 cut(s) 65, 352, 425
BciT130I CCWGG 4 cut(s) 10, 35, 393, 462
BciVI GTATCC 1 cut(s) 355
BcnI CCSGG 1 cut(s) 338
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 1 cut(s) 402
BfuI GTATCC 1 cut(s) 355
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 5 cut(s) 10, 35, 338, 393, 462
Bme18I GGWCC 1 cut(s) 445
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 2 cut(s) 390, 447
BmrFI CCNGG 5 cut(s) 10, 35, 338, 393, 462
BmsI GCATC 1 cut(s) 91
BplI GAGNNNNNCTC 2 cut(s) 167, 199
BpuMI CCSGG 1 cut(s) 338
BsaJI CCNNGG 2 cut(s) 8, 366
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 317, 467
Bse118I RCCGGY 1 cut(s) 248
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 4 cut(s) 10, 35, 393, 462
BseDI CCNNGG 2 cut(s) 8, 366
BseGI GGATG 2 cut(s) 76, 283
BseLI CCNNNNNNNGG 3 cut(s) 67, 317, 467
BseMI GCAATG 1 cut(s) 111
BseRI GAGGAG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 232
Bsh1236I CGCG 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 2 cut(s) 249, 337
BslI CCNNNNNNNGG 3 cut(s) 67, 317, 467
BsmI GAATGC 1 cut(s) 175
BsoBI CYCGRG 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 2 cut(s) 92, 376
BspACI CCGC 1 cut(s) 305
BspFNI CGCG 1 cut(s) 381
BspLI GGNNCC 2 cut(s) 390, 447
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 248
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 8, 366
BssMI GATC 2 cut(s) 92, 376
Bst2UI CCWGG 4 cut(s) 10, 35, 393, 462
Bst4CI ACNGT 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 419
BstENI CCTNNNNNAGG 1 cut(s) 315
BstF5I GGATG 2 cut(s) 76, 283
BstFNI CGCG 1 cut(s) 381
BstHHI GCGC 1 cut(s) 417
BstKTI GATC 2 cut(s) 95, 379
BstMBI GATC 2 cut(s) 92, 376
BstMWI GCNNNNNNNGC 2 cut(s) 245, 254
BstNI CCWGG 4 cut(s) 10, 35, 393, 462
BstSCI CCNGG 5 cut(s) 8, 33, 336, 391, 460
BstSFI CTRYAG 1 cut(s) 402
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 1 cut(s) 232
BstXI CCANNNNNNTGG 1 cut(s) 41
BsuI GTATCC 1 cut(s) 355
BtgZI GCGATG 1 cut(s) 453
BtsCI GGATG 2 cut(s) 76, 283
Cac8I GCNNGC 1 cut(s) 419
CfoI GCGC 1 cut(s) 417
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 445
CspCI CAANNNNNGTGG 2 cut(s) 178, 213
CviAII CATG 2 cut(s) 194, 290
CviJI RGCY 5 cut(s) 60, 155, 257, 323, 389
CviKI_1 RGCY 5 cut(s) 60, 155, 257, 323, 389
DpnI GATC 2 cut(s) 94, 378
DpnII GATC 2 cut(s) 92, 376
EciI GGCGGA 1 cut(s) 294
Eco32I GATATC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 445
Eco88I CYCGRG 1 cut(s) 212
EcoNI CCTNNNNNAGG 1 cut(s) 315
EcoO109I RGGNCCY 1 cut(s) 445
EcoRII CCWGG 4 cut(s) 8, 33, 391, 460
EcoRV GATATC 1 cut(s) 66
FaeI CATG 2 cut(s) 197, 293
FaiI YATR 3 cut(s) 195, 291, 326
FatI CATG 2 cut(s) 193, 289
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 2 cut(s) 83, 290
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 1 cut(s) 219
GlaI GCGC 1 cut(s) 416
GluI GCNGC 1 cut(s) 246
HapII CCGG 2 cut(s) 249, 337
HhaI GCGC 1 cut(s) 417
Hin1II CATG 2 cut(s) 197, 293
Hin6I GCGC 1 cut(s) 415
HinP1I GCGC 1 cut(s) 415
HinfI GANTC 1 cut(s) 215
HpaII CCGG 2 cut(s) 249, 337
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 4 cut(s) 22, 70, 92, 265
Hpy188III TCNNGA 2 cut(s) 275, 311
Hpy8I GTNNAC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 3 cut(s) 104, 109, 173
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 254
Hsp92II CATG 2 cut(s) 197, 293
HspAI GCGC 1 cut(s) 415
Kzo9I GATC 2 cut(s) 92, 376
LmnI GCTCC 4 cut(s) 254, 320, 394, 412
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 1 cut(s) 91
MaeI CTAG 1 cut(s) 219
MaeIII GTNAC 2 cut(s) 179, 345
MalI GATC 2 cut(s) 94, 378
MboI GATC 2 cut(s) 92, 376
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 1 cut(s) 149
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 8 cut(s) 31, 169, 196, 286, 318, 361, 436, 468
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 1 cut(s) 472
MslI CAYNNNNRTG 1 cut(s) 276
MspI CCGG 2 cut(s) 249, 337
MspR9I CCNGG 5 cut(s) 10, 35, 338, 393, 462
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 4 cut(s) 10, 35, 393, 462
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 2 cut(s) 245, 254
NciI CCSGG 1 cut(s) 338
NdeII GATC 2 cut(s) 92, 376
NlaIII CATG 2 cut(s) 197, 293
NlaIV GGNNCC 2 cut(s) 390, 447
NmuCI GTSAC 1 cut(s) 179
PaeR7I CTCGAG 1 cut(s) 212
PctI GAATGC 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 129
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PpuMI RGGWCCY 1 cut(s) 445
Psp5II RGGWCCY 1 cut(s) 445
Psp6I CCWGG 4 cut(s) 8, 33, 391, 460
PspGI CCWGG 4 cut(s) 8, 33, 391, 460
PspN4I GGNNCC 2 cut(s) 390, 447
PspPI GGNCC 1 cut(s) 445
PspPPI RGGWCCY 1 cut(s) 445
PspXI VCTCGAGB 1 cut(s) 212
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 1 cut(s) 472
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 2 cut(s) 92, 376
Sau96I GGNCC 1 cut(s) 445
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 5 cut(s) 10, 35, 338, 393, 462
SduI GDGCHC 1 cut(s) 336
SetI ASST 3 cut(s) 42, 259, 325
SfaNI GCATC 1 cut(s) 91
SfcI CTRYAG 1 cut(s) 402
Sfr274I CTCGAG 1 cut(s) 212
SinI GGWCC 1 cut(s) 445
SlaI CTCGAG 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 1 cut(s) 149
SsiI CCGC 1 cut(s) 305
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 5 cut(s) 8, 33, 336, 391, 460
TaaI ACNGT 1 cut(s) 130
TaqI TCGA 1 cut(s) 213
TasI AATT 1 cut(s) 149
Tru1I TTAA 1 cut(s) 472
Tru9I TTAA 1 cut(s) 472
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 425
VpaK11BI GGWCC 1 cut(s) 445
XagI CCTNNNNNAGG 1 cut(s) 315
XcmI CCANNNNNNNNNTGG 1 cut(s) 68
XhoI CTCGAG 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.