Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006828

Physical Location & Seq

Genomic Coordinates Forward (+)

9676514 .. 9677623

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1071100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGGGTGTGGATGCAAAGAATCAAAGCAAAAACCCAATGGAGGGCTCGCACGATCACAAGGTCAGCAAAGAGGAGGTGATCGGCTCAAGGACGTCGGAGACTTCGACAGACTCCGCCGCAGCATCATCCAGAAGCTCAAAAACAATGAAGAACTGCGAGAGGTTATTACTTTTATTGTGAAGCAATCGGCAGCGCTTAATCTCGAAGGTGCTGAGAATGTGAAACCCAGACACCTTTCTGAAGGTATTTATCTGGAGGTTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COMPASS-Shg1

Protein Analysis

89

Amino Acids

9.78

Weight (kDa)

9.34

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12530
fragaria_vesca	FvH4_5g01130
malus_domestica	MD04G1071100.v1.1 MD06G1069000.v1.1
prunus_persica	Prupe.5G086200_v2.0.a1
pyrus_communis	pycom06g06760
rosa_chinensis	RchiOBHm_Chr7g0199991 RchiOBHm_Chr7g0200011 RchiOBHm_Chr7g0200111 RchiOBHm_Chr7g0224151
rosa_laevigata	RLG00000003751
rosa_multiflora	Rmu_sc0003357.1_g000003 Rmu_sc0006685.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256290
rosa_rugosa	Rorug07G0057700 Rorug07G0057800.1 Rorug07G0057900
rosa_samantha	Rh7AG183200 Rh7AG486200 Rh7BG186200 Rh7CG192800 Rh7CG192900 Rh7DG186100 Rh7DG186200 Rh7DG187300
rosa_wichuraiana	Rw7G016040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	96
AciI	CCGC	2 cut(s)	115, 118
AcuI	CTGAAG	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	93
AfeI	AGCGCT	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	41, 42
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	93
Aor51HI	AGCGCT	1 cut(s)	195
ApeKI	GCWGC	2 cut(s)	120, 191
AspLEI	GCGC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	132, 203
BcoDI	GTCTC	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	197
BisI	GCNGC	3 cut(s)	118, 121, 192
BlsI	GCNGC	3 cut(s)	119, 122, 193
BmsI	GCATC	2 cut(s)	2, 132
BpuEI	CTTGAG	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	93
BsaXI	ACNNNNNCTCC	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 42
BseGI	GGATG	2 cut(s)	17, 126
BseLI	CCNNNNNNNGG	2 cut(s)	41, 42
BseMII	CTCAG	1 cut(s)	204
BseRI	GAGGAG	1 cut(s)	87
BseXI	GCAGC	2 cut(s)	132, 203
BslI	CCNNNNNNNGG	2 cut(s)	41, 42
BsmAI	GTCTC	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	53, 79
BspACI	CCGC	2 cut(s)	115, 118
BspCNI	CTCAG	1 cut(s)	205
BssMI	GATC	2 cut(s)	53, 79
BssNI	GRCGYC	1 cut(s)	93
BstACI	GRCGYC	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	2 cut(s)	17, 126
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	2 cut(s)	56, 82
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	2 cut(s)	53, 79
BstV1I	GCAGC	2 cut(s)	132, 203
BtsCI	GGATG	2 cut(s)	17, 126
Cac8I	GCNNGC	1 cut(s)	48
CfoI	GCGC	1 cut(s)	196
CviJI	RGCY	3 cut(s)	46, 85, 136
CviKI_1	RGCY	3 cut(s)	46, 85, 136
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	2 cut(s)	55, 81
DpnII	GATC	2 cut(s)	53, 79
EciI	GGCGGA	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	48
Eco47III	AGCGCT	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	118, 121, 192
FokI	GGATG	2 cut(s)	24, 113
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	3 cut(s)	118, 121, 192
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	3 cut(s)	118, 121, 192
HaeII	RGCGCY	1 cut(s)	197
HhaI	GCGC	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	93
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HinfI	GANTC	2 cut(s)	20, 111
HphI	GGTGA	1 cut(s)	89
Hpy188I	TCNGA	2 cut(s)	98, 241
Hpy188III	TCNNGA	3 cut(s)	130, 203, 254
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	200, 236
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	1 cut(s)	15
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	93
Hsp92I	GRCGYC	1 cut(s)	93
HspAI	GCGC	1 cut(s)	194
Kzo9I	GATC	2 cut(s)	53, 79
LpnPI	CCDG	3 cut(s)	143, 239, 241
Lsp1109I	GCAGC	2 cut(s)	132, 203
LweI	GCATC	2 cut(s)	2, 132
MaeII	ACGT	1 cut(s)	93
MalI	GATC	2 cut(s)	55, 81
MboI	GATC	2 cut(s)	53, 79
MboII	GAAGA	1 cut(s)	161
MhlI	GDGCHC	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	105
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	5 cut(s)	35, 65, 68, 154, 250
MseI	TTAA	1 cut(s)	198
NdeII	GATC	2 cut(s)	53, 79
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	3 cut(s)	119, 122, 193
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	3 cut(s)	118, 121, 192
Sau3AI	GATC	2 cut(s)	53, 79
SchI	GAGTC	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	9 cut(s)	64, 79, 96, 138, 165, 211, 237, 247, 261
SfaNI	GCATC	2 cut(s)	2, 132
SgeI	CNNG	8 cut(s)	59, 63, 71, 100, 142, 170, 215, 240
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SsiI	CCGC	2 cut(s)	115, 118
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	2 cut(s)	105, 204
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TseI	GCWGC	2 cut(s)	120, 191
TspDTI	ATGAA	1 cut(s)	162
ZraI	GACGTC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.