Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003357.1

Orthogroup ID

OG0006828

Physical Location & Seq

Genomic Coordinates Forward (+)

3152 .. 10134

Gene Structure 6983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003357.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atgggttgttcgccggcgttcatgtcgaagaaggctgggccggccactacgagtactactgacgattcggtgggctggtcgtcggggttcttgttgagaaagggggctccaaaaatgacctcagagagcgccgggtccgtcattgatgacaacgatccggtaggtcgtgttggtgctggaaaagtattggtctttaatttggactcagaaattggggtctttggaagctggggacgcacgagctcggtctccggcgaccggctaccgatgaccggactcgggcgaacggtgaccggattccggcgaccaatgaccggattccgggaaccggtaaccaaaatccggcgaccgatgactggaatccagaatccggctattattgccccccaacggttttccactgcgttgcggggatggaatgaggttgacggcgttctggcgaggagagaaggaaagtctacgaatctcaaggtaagcaaagaagaggtgatagcgaagctaaaggacgatggcgacttcgacaggctccgccgcaagatcattcaaaagctcaaaaacaacgaggaattacgcgaaaatattatttcaattgtgaagcaatcacaagcgcttaatcgcccaggtgccgagaacatgaaacccaggcaactctctgatgacatttatcaggaggttgggggcaaagtgatgagccagatatcggatgggttgtgggggataatcagatcaagtgatgcaatgcagagtgaaataagcgaaactgttcagtctgtttacaataaattggctaatccagatgggaatgcagacggtcagtcctccactcatgttgttcaagttcaagtcgagtctagtgataatggattaatcgccggtgctgccagtggagctgttgatggtgtgtacgaccatcatcaggatgacaataaccatgaggcacaacttccgcctcgtgaaaaaggagctatgacagagcaccgggaaatgttacaggataagatggataccgagggtgttgatcgcgtagtggcttctggtgtttctacagacacggagcacaagcaggagtgtgatggtagcgacgaggaccccgatgtgcctcctggttttggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COMPASS-Shg1

Protein Analysis

371

Amino Acids

40.11

Weight (kDa)

5.34

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12530
fragaria_vesca	FvH4_5g01130
malus_domestica	MD04G1071100.v1.1 MD06G1069000.v1.1
prunus_persica	Prupe.5G086200_v2.0.a1
pyrus_communis	pycom06g06760
rosa_chinensis	RchiOBHm_Chr7g0199991 RchiOBHm_Chr7g0200011 RchiOBHm_Chr7g0200111 RchiOBHm_Chr7g0224151
rosa_laevigata	RLG00000003751
rosa_multiflora	Rmu_sc0003357.1_g000003 Rmu_sc0006685.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256290
rosa_rugosa	Rorug07G0057700 Rorug07G0057800.1 Rorug07G0057900
rosa_samantha	Rh7AG183200 Rh7AG486200 Rh7BG186200 Rh7CG192800 Rh7CG192900 Rh7DG186100 Rh7DG186200 Rh7DG187300
rosa_wichuraiana	Rw7G016040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	623
AccI	GTMKAC	1 cut(s)	458
AccII	CGCG	2 cut(s)	573, 1023
AciI	CCGC	4 cut(s)	409, 529, 532, 947
AclWI	GGATC	1 cut(s)	149
AcoI	YGGCCR	1 cut(s)	42
AfaI	GTAC	2 cut(s)	55, 905
AfeI	AGCGCT	1 cut(s)	609
AgeI	ACCGGT	1 cut(s)	328
AgsI	TTSAA	4 cut(s)	545, 588, 836, 842
AhdI	GACNNNNNGTC	1 cut(s)	814
AjnI	CCWGG	3 cut(s)	619, 641, 1102
AluBI	AGCT	6 cut(s)	228, 243, 499, 550, 890, 965
AluI	AGCT	6 cut(s)	228, 243, 499, 550, 890, 965
Alw21I	GWGCWC	3 cut(s)	245, 978, 1059
Alw26I	GTCTC	1 cut(s)	253
AlwI	GGATC	1 cut(s)	149
Ama87I	CYCGRG	1 cut(s)	278
Aor51HI	AGCGCT	1 cut(s)	609
AoxI	GGCC	2 cut(s)	38, 42
ApeKI	GCWGC	1 cut(s)	878
AseI	ATTAAT	1 cut(s)	866
AsiGI	ACCGGT	1 cut(s)	328
Asp700I	GAANNNNTTC	1 cut(s)	762
AspLEI	GCGC	2 cut(s)	131, 610
AspS9I	GGNCC	3 cut(s)	38, 135, 1087
AsuC2I	CCSGG	3 cut(s)	133, 323, 980
AsuHPI	GGTGA	2 cut(s)	301, 499
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	2 cut(s)	135, 1087
BanI	GGYRCC	1 cut(s)	623
BanII	GRGCYC	2 cut(s)	109, 245
BauI	CACGAG	2 cut(s)	238, 951
Bbv12I	GWGCWC	3 cut(s)	245, 978, 1059
BbvI	GCAGC	1 cut(s)	865
BccI	CCATC	8 cut(s)	408, 503, 698, 791, 890, 918, 994, 1067
BceAI	ACGGC	1 cut(s)	445
BciT130I	CCWGG	3 cut(s)	621, 643, 1104
BciVI	GTATCC	1 cut(s)	997
BcnI	CCSGG	3 cut(s)	133, 323, 980
BcoDI	GTCTC	1 cut(s)	253
BfaI	CTAG	1 cut(s)	852
BfmI	CTRYAG	1 cut(s)	1044
BfoI	RGCGCY	2 cut(s)	132, 611
BfuI	GTATCC	1 cut(s)	997
BisI	GCNGC	2 cut(s)	532, 879
BlsI	GCNGC	2 cut(s)	533, 880
BmcAI	AGTACT	1 cut(s)	55
Bme1390I	CCNGG	6 cut(s)	133, 323, 621, 643, 980, 1104
Bme18I	GGWCC	2 cut(s)	135, 1087
BmeRI	GACNNNNNGTC	1 cut(s)	814
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	3 cut(s)	38, 135, 1087
BmiI	GGNNCC	6 cut(s)	108, 136, 327, 527, 625, 1089
BmrFI	CCNGG	6 cut(s)	133, 323, 621, 643, 980, 1104
BmsI	GCATC	1 cut(s)	724
BpuEI	CTTGAG	1 cut(s)	452
BpuMI	CCSGG	3 cut(s)	133, 323, 980
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	3 cut(s)	619, 641, 1008
BsaWI	WCCGGW	5 cut(s)	157, 272, 293, 314, 328
Bse118I	RCCGGY	5 cut(s)	13, 40, 258, 328, 872
Bse1I	ACTGG	2 cut(s)	361, 882
Bse3DI	GCAATG	1 cut(s)	744
BseBI	CCWGG	3 cut(s)	621, 643, 1104
BseDI	CCNNGG	3 cut(s)	619, 641, 1008
BseGI	GGATG	3 cut(s)	419, 709, 925
BseMI	GCAATG	1 cut(s)	744
BseMII	CTCAG	2 cut(s)	135, 219
BseNI	ACTGG	2 cut(s)	361, 882
BseRI	GAGGAG	1 cut(s)	457
BseXI	GCAGC	1 cut(s)	865
BseYI	CCCAGC	2 cut(s)	35, 228
Bsh1236I	CGCG	2 cut(s)	573, 1023
Bsh1285I	CGRYCG	2 cut(s)	259, 350
BshFI	GGCC	2 cut(s)	40, 44
BshNI	GGYRCC	1 cut(s)	623
BshTI	ACCGGT	1 cut(s)	328
BsiEI	CGRYCG	2 cut(s)	259, 350
BsiHKAI	GWGCWC	3 cut(s)	245, 978, 1059
BsiHKCI	CYCGRG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	253
BsmFI	GGGAC	1 cut(s)	246
BsmI	GAATGC	1 cut(s)	808
BsnI	GGCC	2 cut(s)	40, 44
Bso31I	GGTCTC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	4 cut(s)	109, 245, 978, 1059
Bsp143I	GATC	4 cut(s)	154, 537, 725, 1018
BspACI	CCGC	4 cut(s)	409, 529, 532, 947
BspANI	GGCC	2 cut(s)	40, 44
BspCNI	CTCAG	2 cut(s)	134, 218
BspFNI	CGCG	2 cut(s)	573, 1023
BspLI	GGNNCC	6 cut(s)	108, 136, 327, 527, 625, 1089
BspPI	GGATC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	623
BspTNI	GGTCTC	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	744
BsrFI	RCCGGY	5 cut(s)	13, 40, 258, 328, 872
BsrI	ACTGG	2 cut(s)	361, 882
BssAI	RCCGGY	5 cut(s)	13, 40, 258, 328, 872
BssECI	CCNNGG	3 cut(s)	619, 641, 1008
BssMI	GATC	4 cut(s)	154, 537, 725, 1018
BssSI	CACGAG	2 cut(s)	238, 951
Bst2BI	CACGAG	2 cut(s)	238, 951
Bst2UI	CCWGG	3 cut(s)	621, 643, 1104
Bst4CI	ACNGT	4 cut(s)	289, 393, 763, 812
Bst6I	CTCTTC	1 cut(s)	477
BstC8I	GCNNGC	2 cut(s)	15, 42
BstDEI	CTNAG	2 cut(s)	121, 205
BstEII	GGTNACC	2 cut(s)	289, 331
BstF5I	GGATG	3 cut(s)	419, 709, 925
BstFNI	CGCG	2 cut(s)	573, 1023
BstH2I	RGCGCY	2 cut(s)	132, 611
BstHHI	GCGC	2 cut(s)	131, 610
BstKTI	GATC	4 cut(s)	157, 540, 728, 1021
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	4 cut(s)	154, 537, 725, 1018
BstMCI	CGRYCG	2 cut(s)	259, 350
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 234, 380, 878, 887
BstNI	CCWGG	3 cut(s)	621, 643, 1104
BstPI	GGTNACC	2 cut(s)	289, 331
BstSCI	CCNGG	6 cut(s)	131, 321, 619, 641, 978, 1102
BstSFI	CTRYAG	1 cut(s)	1044
BstUI	CGCG	2 cut(s)	573, 1023
BstV1I	GCAGC	1 cut(s)	865
BsuI	GTATCC	1 cut(s)	997
BsuRI	GGCC	2 cut(s)	40, 44
BtsCI	GGATG	3 cut(s)	419, 709, 925
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	2 cut(s)	399, 889
Cac8I	GCNNGC	2 cut(s)	15, 42
CfoI	GCGC	2 cut(s)	131, 610
Cfr10I	RCCGGY	5 cut(s)	13, 40, 258, 328, 872
Cfr13I	GGNCC	3 cut(s)	38, 135, 1087
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	2 cut(s)	54, 904
CspAI	ACCGGT	1 cut(s)	328
CspCI	CAANNNNNGTGG	2 cut(s)	811, 846
CviAII	CATG	4 cut(s)	22, 634, 827, 932
CviQI	GTAC	2 cut(s)	54, 904
DdeI	CTNAG	2 cut(s)	121, 205
DpnI	GATC	4 cut(s)	156, 539, 727, 1020
DpnII	GATC	4 cut(s)	154, 537, 725, 1018
DriI	GACNNNNNGTC	1 cut(s)	814
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	477
Eam1105I	GACNNNNNGTC	1 cut(s)	814
EarI	CTCTTC	1 cut(s)	477
EciI	GGCGGA	2 cut(s)	518, 936
Ecl136II	GAGCTC	1 cut(s)	243
Eco24I	GRGCYC	2 cut(s)	109, 245
Eco31I	GGTCTC	1 cut(s)	253
Eco32I	GATATC	1 cut(s)	699
Eco47I	GGWCC	2 cut(s)	135, 1087
Eco47III	AGCGCT	1 cut(s)	609
Eco53kI	GAGCTC	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	278
Eco91I	GGTNACC	2 cut(s)	289, 331
EcoICRI	GAGCTC	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	1087
EcoO65I	GGTNACC	2 cut(s)	289, 331
EcoRII	CCWGG	3 cut(s)	619, 641, 1102
EcoRV	GATATC	1 cut(s)	699
EcoT38I	GRGCYC	2 cut(s)	109, 245
FaeI	CATG	4 cut(s)	25, 637, 830, 935
FaiI	YATR	5 cut(s)	23, 635, 828, 933, 968
FaqI	GGGAC	1 cut(s)	246
FatI	CATG	4 cut(s)	21, 633, 826, 931
FauI	CCCGC	1 cut(s)	402
FblI	GTMKAC	1 cut(s)	458
Fnu4HI	GCNGC	2 cut(s)	532, 879
FokI	GGATG	3 cut(s)	426, 716, 932
FriOI	GRGCYC	2 cut(s)	109, 245
FseI	GGCCGGCC	1 cut(s)	44
Fsp4HI	GCNGC	2 cut(s)	532, 879
FspBI	CTAG	1 cut(s)	852
GlaI	GCGC	2 cut(s)	130, 609
GluI	GCNGC	2 cut(s)	532, 879
GsaI	CCCAGC	2 cut(s)	39, 232
HaeII	RGCGCY	2 cut(s)	132, 611
HaeIII	GGCC	2 cut(s)	40, 44
HgaI	GACGC	1 cut(s)	243
HhaI	GCGC	2 cut(s)	131, 610
Hin1II	CATG	4 cut(s)	25, 637, 830, 935
Hin6I	GCGC	2 cut(s)	129, 608
HinP1I	GCGC	2 cut(s)	129, 608
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	9 cut(s)	65, 203, 276, 297, 318, 360, 367, 463, 848
HphI	GGTGA	2 cut(s)	301, 499
Hpy166II	GTNNAC	4 cut(s)	427, 459, 775, 904
Hpy188I	TCNGA	5 cut(s)	124, 208, 655, 703, 725
Hpy188III	TCNNGA	5 cut(s)	364, 668, 794, 917, 953
Hpy8I	GTNNAC	4 cut(s)	427, 459, 775, 904
Hpy99I	CGWCG	2 cut(s)	85, 1085
HpyAV	CCTTC	2 cut(s)	25, 443
HpyCH4III	ACNGT	4 cut(s)	289, 393, 763, 812
HpyCH4V	TGCA	3 cut(s)	737, 742, 806
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 234, 380, 878, 887
HpyF3I	CTNAG	2 cut(s)	121, 205
Hsp92II	CATG	4 cut(s)	25, 637, 830, 935
HspAI	GCGC	2 cut(s)	129, 608
KroI	GCCGGC	2 cut(s)	13, 40
KroNI	GCCGGC	2 cut(s)	15, 42
Kzo9I	GATC	4 cut(s)	154, 537, 725, 1018
LmnI	GCTCC	5 cut(s)	112, 531, 887, 962, 1054
Lsp1109I	GCAGC	1 cut(s)	865
LweI	GCATC	1 cut(s)	724
MaeI	CTAG	1 cut(s)	852
MaeIII	GTNAC	3 cut(s)	289, 331, 987
MalI	GATC	4 cut(s)	156, 539, 727, 1020
MboI	GATC	4 cut(s)	154, 537, 725, 1018
MboII	GAAGA	2 cut(s)	40, 494
MfeI	CAATTG	1 cut(s)	588
MhlI	GDGCHC	4 cut(s)	109, 245, 978, 1059
MluCI	AATT	5 cut(s)	196, 210, 566, 588, 782
MlyI	GAGTC	3 cut(s)	197, 270, 857
MreI	CGCCGGCG	1 cut(s)	13
MroNI	GCCGGC	2 cut(s)	13, 40
MroXI	GAANNNNTTC	1 cut(s)	762
MseI	TTAA	4 cut(s)	195, 612, 866, 1114
MslI	CAYNNNNRTG	1 cut(s)	918
MspR9I	CCNGG	6 cut(s)	133, 323, 621, 643, 980, 1104
MunI	CAATTG	1 cut(s)	588
Mva1269I	GAATGC	1 cut(s)	808
MvaI	CCWGG	3 cut(s)	621, 643, 1104
MvnI	CGCG	2 cut(s)	573, 1023
MwoI	GCNNNNNNNGC	5 cut(s)	41, 234, 380, 878, 887
NaeI	GCCGGC	2 cut(s)	15, 42
NciI	CCSGG	3 cut(s)	133, 323, 980
NdeII	GATC	4 cut(s)	154, 537, 725, 1018
NgoMIV	GCCGGC	2 cut(s)	13, 40
NlaIII	CATG	4 cut(s)	25, 637, 830, 935
NlaIV	GGNNCC	6 cut(s)	108, 136, 327, 527, 625, 1089
NmeAIII	GCCGAG	1 cut(s)	652
NmuCI	GTSAC	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	1089
PctI	GAATGC	1 cut(s)	808
PdiI	GCCGGC	2 cut(s)	15, 42
PdmI	GAANNNNTTC	1 cut(s)	762
PfeI	GAWTC	6 cut(s)	65, 297, 318, 360, 367, 463
PfoI	TCCNGGA	1 cut(s)	321
PinAI	ACCGGT	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	533, 880
PleI	GAGTC	3 cut(s)	197, 270, 856
PpsI	GAGTC	3 cut(s)	197, 270, 856
PpuMI	RGGWCCY	1 cut(s)	1087
PshBI	ATTAAT	1 cut(s)	866
Psp124BI	GAGCTC	1 cut(s)	245
Psp5II	RGGWCCY	1 cut(s)	1087
Psp6I	CCWGG	3 cut(s)	619, 641, 1102
PspEI	GGTNACC	2 cut(s)	289, 331
PspFI	CCCAGC	2 cut(s)	35, 228
PspGI	CCWGG	3 cut(s)	619, 641, 1102
PspN4I	GGNNCC	6 cut(s)	108, 136, 327, 527, 625, 1089
PspPI	GGNCC	3 cut(s)	38, 135, 1087
PspPPI	RGGWCCY	1 cut(s)	1087
RigI	GGCCGGCC	1 cut(s)	44
RsaI	GTAC	2 cut(s)	55, 905
RsaNI	GTAC	2 cut(s)	54, 904
RseI	CAYNNNNRTG	1 cut(s)	918
SacI	GAGCTC	1 cut(s)	245
SaqAI	TTAA	4 cut(s)	195, 612, 866, 1114
SatI	GCNGC	2 cut(s)	532, 879
Sau3AI	GATC	4 cut(s)	154, 537, 725, 1018
Sau96I	GGNCC	3 cut(s)	38, 135, 1087
ScaI	AGTACT	1 cut(s)	55
SchI	GAGTC	3 cut(s)	197, 270, 857
ScrFI	CCNGG	6 cut(s)	133, 323, 621, 643, 980, 1104
SduI	GDGCHC	4 cut(s)	109, 245, 978, 1059
SfaNI	GCATC	1 cut(s)	724
SfcI	CTRYAG	1 cut(s)	1044
SgrAI	CRCCGGYG	2 cut(s)	13, 872
SinI	GGWCC	2 cut(s)	135, 1087
SmiMI	CAYNNNNRTG	1 cut(s)	918
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	5 cut(s)	196, 210, 566, 588, 782
SsiI	CCGC	4 cut(s)	409, 529, 532, 947
SspI	AATATT	1 cut(s)	580
SspMI	CTAG	1 cut(s)	852
SstI	GAGCTC	1 cut(s)	245
StyD4I	CCNGG	6 cut(s)	131, 321, 619, 641, 978, 1102
TaaI	ACNGT	4 cut(s)	289, 393, 763, 812
TaqI	TCGA	3 cut(s)	26, 519, 846
TaqII	GACCGA	2 cut(s)	235, 364
TasI	AATT	5 cut(s)	196, 210, 566, 588, 782
TatI	WGTACW	1 cut(s)	53
TauI	GCSGC	1 cut(s)	534
TfiI	GAWTC	6 cut(s)	65, 297, 318, 360, 367, 463
Tru1I	TTAA	4 cut(s)	195, 612, 866, 1114
Tru9I	TTAA	4 cut(s)	195, 612, 866, 1114
TscAI	CASTG	2 cut(s)	406, 889
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	1 cut(s)	878
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	10, 650
TspGWI	ACGGA	2 cut(s)	127, 1067
TspRI	CASTG	2 cut(s)	406, 889
VpaK11BI	GGWCC	2 cut(s)	135, 1087
VspI	ATTAAT	1 cut(s)	866
XcmI	CCANNNNNNNNNTGG	1 cut(s)	701
XmiI	GTMKAC	1 cut(s)	458
XmnI	GAANNNNTTC	1 cut(s)	762
XspI	CTAG	1 cut(s)	852
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.