Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006828

Physical Location & Seq

Genomic Coordinates Forward (+)

17031528 .. 17037217

Gene Structure 5690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG192900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCCGATTTTGTTTTTCGTGTTTCGAATTGCTAGGGGCAAAGTGATGAGCCAGATATCGGATGGGTTGTGGGGGATAATCAGATCAAGTGATGCAATGCAGAGTGAAATAAGCGAAACTGTTCAGTCTGTTTACAATAAATTGGCTAATCCAGAAGGGAATGCAGAGGGTCAGTCCTCCACTCATGCTGTTCAAGTTCAAGTCGAGTCTAGTGATAATGGATTAGTCGTTGGTGCTGCCAGCGGAGCTGTTGTTGGTGTGTCCGACAATCATCAGGATGACAATAACCATGAGCTACAACTTCTGCCTCGTGAAAAAGGAGCTATGACAGAGCACCGGGAAATGTTACAGGATAAGATGGATACCGAGGGTGTTGATCGCGTAGTGGCTCCTGGCGTTTCTACAGACACGGAGCACAAGCAGGAGTGTGATGGTAGCGACGAGGACCCTGATGTGCCTCCTGGTTTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COMPASS-Shg1

Protein Analysis

157

Amino Acids

16.91

Weight (kDa)

4.41

Isoelectric Point (pI)

52.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12530
fragaria_vesca	FvH4_5g01130
malus_domestica	MD04G1071100.v1.1 MD06G1069000.v1.1
prunus_persica	Prupe.5G086200_v2.0.a1
pyrus_communis	pycom06g06760
rosa_chinensis	RchiOBHm_Chr7g0199991 RchiOBHm_Chr7g0200011 RchiOBHm_Chr7g0200111 RchiOBHm_Chr7g0224151
rosa_laevigata	RLG00000003751
rosa_multiflora	Rmu_sc0003357.1_g000003 Rmu_sc0006685.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256290
rosa_rugosa	Rorug07G0057700 Rorug07G0057800.1 Rorug07G0057900
rosa_samantha	Rh7AG183200 Rh7AG486200 Rh7BG186200 Rh7CG192800 Rh7CG192900 Rh7DG186100 Rh7DG186200 Rh7DG187300
rosa_wichuraiana	Rw7G016040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	381
AciI	CCGC	1 cut(s)	243
AfiI	CCNNNNNNNGG	2 cut(s)	58, 467
AgsI	TTSAA	2 cut(s)	194, 200
AjnI	CCWGG	2 cut(s)	391, 460
AluBI	AGCT	3 cut(s)	248, 295, 323
AluI	AGCT	3 cut(s)	248, 295, 323
Alw21I	GWGCWC	2 cut(s)	336, 417
ApeKI	GCWGC	1 cut(s)	236
Asp700I	GAANNNNTTC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	445
AsuC2I	CCSGG	1 cut(s)	338
AsuII	TTCGAA	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	445
BauI	CACGAG	1 cut(s)	309
Bbv12I	GWGCWC	2 cut(s)	336, 417
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	3 cut(s)	56, 352, 425
BciT130I	CCWGG	2 cut(s)	393, 462
BciVI	GTATCC	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	338
BfaI	CTAG	2 cut(s)	33, 210
BfmI	CTRYAG	1 cut(s)	402
BfuI	GTATCC	1 cut(s)	355
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	3 cut(s)	338, 393, 462
Bme18I	GGWCC	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	445
BmiI	GGNNCC	2 cut(s)	390, 447
BmrFI	CCNGG	3 cut(s)	338, 393, 462
BmsI	GCATC	1 cut(s)	82
Bpu14I	TTCGAA	1 cut(s)	25
BpuMI	CCSGG	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	366
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 467
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	2 cut(s)	393, 462
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	2 cut(s)	67, 283
BseLI	CCNNNNNNNGG	2 cut(s)	58, 467
BseMI	GCAATG	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	223
Bsh1236I	CGCG	1 cut(s)	381
BsiHKAI	GWGCWC	2 cut(s)	336, 417
BsiSI	CCGG	1 cut(s)	337
BslI	CCNNNNNNNGG	2 cut(s)	58, 467
BsmI	GAATGC	1 cut(s)	166
Bsp119I	TTCGAA	1 cut(s)	25
Bsp1286I	GDGCHC	2 cut(s)	336, 417
Bsp143I	GATC	2 cut(s)	83, 376
BspACI	CCGC	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	2 cut(s)	390, 447
BspT104I	TTCGAA	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	2 cut(s)	83, 376
BssSI	CACGAG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	2 cut(s)	393, 462
Bst4CI	ACNGT	1 cut(s)	121
BstBI	TTCGAA	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	241
BstF5I	GGATG	2 cut(s)	67, 283
BstFNI	CGCG	1 cut(s)	381
BstKTI	GATC	2 cut(s)	86, 379
BstMBI	GATC	2 cut(s)	83, 376
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	2 cut(s)	393, 462
BstSCI	CCNGG	3 cut(s)	336, 391, 460
BstSFI	CTRYAG	1 cut(s)	402
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	223
BsuI	GTATCC	1 cut(s)	355
BtsCI	GGATG	2 cut(s)	67, 283
Cac8I	GCNNGC	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	445
CviAII	CATG	2 cut(s)	185, 290
CviJI	RGCY	6 cut(s)	51, 146, 248, 295, 323, 389
CviKI_1	RGCY	6 cut(s)	51, 146, 248, 295, 323, 389
DpnI	GATC	2 cut(s)	85, 378
DpnII	GATC	2 cut(s)	83, 376
Eco32I	GATATC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	445
EcoO109I	RGGNCCY	1 cut(s)	445
EcoRII	CCWGG	2 cut(s)	391, 460
EcoRV	GATATC	1 cut(s)	57
FaeI	CATG	2 cut(s)	188, 293
FaiI	YATR	3 cut(s)	186, 291, 326
FatI	CATG	2 cut(s)	184, 289
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	2 cut(s)	74, 290
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	2 cut(s)	33, 210
GluI	GCNGC	1 cut(s)	237
HapII	CCGG	1 cut(s)	337
Hin1II	CATG	2 cut(s)	188, 293
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	1 cut(s)	337
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	61, 83, 265
Hpy188III	TCNNGA	3 cut(s)	152, 275, 311
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	443
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	3 cut(s)	95, 100, 164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
Hsp92II	CATG	2 cut(s)	188, 293
Kzo9I	GATC	2 cut(s)	83, 376
LmnI	GCTCC	4 cut(s)	245, 320, 394, 412
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	2 cut(s)	33, 210
MaeIII	GTNAC	1 cut(s)	345
MalI	GATC	2 cut(s)	85, 378
MboI	GATC	2 cut(s)	83, 376
MhlI	GDGCHC	2 cut(s)	336, 417
MluCI	AATT	2 cut(s)	27, 140
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	6 cut(s)	160, 187, 318, 361, 436, 468
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	1 cut(s)	472
MslI	CAYNNNNRTG	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	1 cut(s)	337
MspR9I	CCNGG	3 cut(s)	338, 393, 462
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	2 cut(s)	393, 462
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	1 cut(s)	245
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	2 cut(s)	83, 376
NlaIII	CATG	2 cut(s)	188, 293
NlaIV	GGNNCC	2 cut(s)	390, 447
NspV	TTCGAA	1 cut(s)	25
PctI	GAATGC	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	238
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PpuMI	RGGWCCY	1 cut(s)	445
Psp5II	RGGWCCY	1 cut(s)	445
Psp6I	CCWGG	2 cut(s)	391, 460
PspGI	CCWGG	2 cut(s)	391, 460
PspN4I	GGNNCC	2 cut(s)	390, 447
PspPI	GGNCC	1 cut(s)	445
PspPPI	RGGWCCY	1 cut(s)	445
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	472
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	2 cut(s)	83, 376
Sau96I	GGNCC	1 cut(s)	445
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	3 cut(s)	338, 393, 462
SduI	GDGCHC	2 cut(s)	336, 417
SetI	ASST	3 cut(s)	250, 297, 325
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	1 cut(s)	402
SfuI	TTCGAA	1 cut(s)	25
SinI	GGWCC	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	276
Sse9I	AATT	2 cut(s)	27, 140
SsiI	CCGC	1 cut(s)	243
SspMI	CTAG	2 cut(s)	33, 210
StyD4I	CCNGG	3 cut(s)	336, 391, 460
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	2 cut(s)	25, 204
TasI	AATT	2 cut(s)	27, 140
Tru1I	TTAA	1 cut(s)	472
Tru9I	TTAA	1 cut(s)	472
TseI	GCWGC	1 cut(s)	236
TspGWI	ACGGA	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	445
XcmI	CCANNNNNNNNNTGG	1 cut(s)	59
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	2 cut(s)	33, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.