Rh7AG486200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006828
Physical Location & Seq
Reverse (-)
68599876 .. 68600866
991 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG486200.1

Sequence Viewer

Length: 474 bp
ATGCCAATTTTGTTTTTCGTGTTTCGAATTGGTAGGGGCAAAGTGATGAGCCAGATATCGGATGGGTTGTGGGGGATAATCAGATCAAGTGATGCAATGCAGAGTGAAATAAGCGAAACTGTTCAGTCTGTTTACAATAAATTGGCTAATCCAGATGGGAATGCAGACGGTCAGTCCTCCACTCATGTTGTTCAAGTTCAAGTCGAGTCTAGTGATAATGGATTAGTCACCGGTGCTGCCAGTGGAGCTGTTATTGGTGTGCCTGACAATCATCAGGATGACAATAACCATGAGGCACAACTTCCGCCTCGTGAAAAAGGAGCTATGACAGAGCACCGGGAAATGTTACAGGATAAGATGGATACCGAGGGTGTTGATCGCATAGTGGCTCCTGGCGTTTCTACAGACACGGAGCACAAGCAGGAGTGTGATGGTAGCGACGAGGACCCCGATGTGCCTCCTGGTTTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COMPASS-Shg1

Protein Analysis

157

Amino Acids

16.88

Weight (kDa)

4.38

Isoelectric Point (pI)

49.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 305
AfiI CCNNNNNNNGG 2 cut(s) 58, 467
AgeI ACCGGT 1 cut(s) 230
AgsI TTSAA 2 cut(s) 194, 200
AhdI GACNNNNNGTC 1 cut(s) 172
AjnI CCWGG 2 cut(s) 391, 460
AluBI AGCT 2 cut(s) 248, 323
AluI AGCT 2 cut(s) 248, 323
Alw21I GWGCWC 2 cut(s) 336, 417
ApeKI GCWGC 1 cut(s) 236
AsiGI ACCGGT 1 cut(s) 230
Asp700I GAANNNNTTC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 445
AsuC2I CCSGG 1 cut(s) 338
AsuHPI GGTGA 1 cut(s) 220
AsuII TTCGAA 1 cut(s) 25
AvaII GGWCC 1 cut(s) 445
BauI CACGAG 1 cut(s) 309
Bbv12I GWGCWC 2 cut(s) 336, 417
BbvI GCAGC 1 cut(s) 223
BccI CCATC 4 cut(s) 56, 149, 352, 425
BciT130I CCWGG 2 cut(s) 393, 462
BciVI GTATCC 1 cut(s) 355
BcnI CCSGG 1 cut(s) 338
BfaI CTAG 1 cut(s) 210
BfmI CTRYAG 1 cut(s) 402
BfuI GTATCC 1 cut(s) 355
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
Bme1390I CCNGG 3 cut(s) 338, 393, 462
Bme18I GGWCC 1 cut(s) 445
BmeRI GACNNNNNGTC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 2 cut(s) 390, 447
BmrFI CCNGG 3 cut(s) 338, 393, 462
BmsI GCATC 1 cut(s) 82
Bpu14I TTCGAA 1 cut(s) 25
BpuMI CCSGG 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 366
BsaWI WCCGGW 1 cut(s) 230
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 467
Bse118I RCCGGY 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 240
Bse3DI GCAATG 1 cut(s) 102
BseBI CCWGG 2 cut(s) 393, 462
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 2 cut(s) 67, 283
BseLI CCNNNNNNNGG 2 cut(s) 58, 467
BseMI GCAATG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 223
BshTI ACCGGT 1 cut(s) 230
BsiHKAI GWGCWC 2 cut(s) 336, 417
BsiSI CCGG 2 cut(s) 231, 337
BslI CCNNNNNNNGG 2 cut(s) 58, 467
BsmI GAATGC 1 cut(s) 166
Bsp119I TTCGAA 1 cut(s) 25
Bsp1286I GDGCHC 2 cut(s) 336, 417
Bsp143I GATC 2 cut(s) 83, 376
BspACI CCGC 1 cut(s) 305
BspLI GGNNCC 2 cut(s) 390, 447
BspT104I TTCGAA 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 230
BsrI ACTGG 1 cut(s) 240
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 2 cut(s) 83, 376
BssSI CACGAG 1 cut(s) 309
Bst2BI CACGAG 1 cut(s) 309
Bst2UI CCWGG 2 cut(s) 393, 462
Bst4CI ACNGT 2 cut(s) 121, 170
BstBI TTCGAA 1 cut(s) 25
BstF5I GGATG 2 cut(s) 67, 283
BstKTI GATC 2 cut(s) 86, 379
BstMBI GATC 2 cut(s) 83, 376
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 2 cut(s) 393, 462
BstSCI CCNGG 3 cut(s) 336, 391, 460
BstSFI CTRYAG 1 cut(s) 402
BstV1I GCAGC 1 cut(s) 223
BsuI GTATCC 1 cut(s) 355
BtsCI GGATG 2 cut(s) 67, 283
BtsIMutI CAGTG 1 cut(s) 247
Cfr10I RCCGGY 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 445
CspAI ACCGGT 1 cut(s) 230
CspCI CAANNNNNGTGG 2 cut(s) 169, 204
CviAII CATG 2 cut(s) 185, 290
CviJI RGCY 5 cut(s) 51, 146, 248, 323, 389
CviKI_1 RGCY 5 cut(s) 51, 146, 248, 323, 389
DpnI GATC 2 cut(s) 85, 378
DpnII GATC 2 cut(s) 83, 376
DriI GACNNNNNGTC 1 cut(s) 172
Eam1105I GACNNNNNGTC 1 cut(s) 172
EciI GGCGGA 1 cut(s) 294
Eco32I GATATC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 445
EcoO109I RGGNCCY 1 cut(s) 445
EcoRII CCWGG 2 cut(s) 391, 460
EcoRV GATATC 1 cut(s) 57
FaeI CATG 2 cut(s) 188, 293
FaiI YATR 4 cut(s) 186, 291, 326, 383
FatI CATG 2 cut(s) 184, 289
Fnu4HI GCNGC 1 cut(s) 237
FokI GGATG 2 cut(s) 74, 290
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 1 cut(s) 210
GluI GCNGC 1 cut(s) 237
HapII CCGG 2 cut(s) 231, 337
Hin1II CATG 2 cut(s) 188, 293
HinfI GANTC 1 cut(s) 206
HpaII CCGG 2 cut(s) 231, 337
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 2 cut(s) 61, 83
Hpy188III TCNNGA 3 cut(s) 152, 275, 311
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 1 cut(s) 443
HpyCH4III ACNGT 2 cut(s) 121, 170
HpyCH4V TGCA 3 cut(s) 95, 100, 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
Hsp92II CATG 2 cut(s) 188, 293
Kzo9I GATC 2 cut(s) 83, 376
LmnI GCTCC 4 cut(s) 245, 320, 394, 412
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 1 cut(s) 82
MaeI CTAG 1 cut(s) 210
MaeIII GTNAC 2 cut(s) 226, 345
MalI GATC 2 cut(s) 85, 378
MboI GATC 2 cut(s) 83, 376
MhlI GDGCHC 2 cut(s) 336, 417
MluCI AATT 3 cut(s) 6, 27, 140
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 6 cut(s) 187, 286, 318, 361, 436, 468
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 1 cut(s) 472
MslI CAYNNNNRTG 1 cut(s) 276
MspI CCGG 2 cut(s) 231, 337
MspR9I CCNGG 3 cut(s) 338, 393, 462
Mva1269I GAATGC 1 cut(s) 166
MvaI CCWGG 2 cut(s) 393, 462
MwoI GCNNNNNNNGC 1 cut(s) 245
NciI CCSGG 1 cut(s) 338
NdeII GATC 2 cut(s) 83, 376
NlaIII CATG 2 cut(s) 188, 293
NlaIV GGNNCC 2 cut(s) 390, 447
NmuCI GTSAC 1 cut(s) 226
NspV TTCGAA 1 cut(s) 25
PcsI WCGNNNNNNNCGW 1 cut(s) 447
PctI GAATGC 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 120
PinAI ACCGGT 1 cut(s) 230
PkrI GCNGC 1 cut(s) 238
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PpuMI RGGWCCY 1 cut(s) 445
Psp5II RGGWCCY 1 cut(s) 445
Psp6I CCWGG 2 cut(s) 391, 460
PspGI CCWGG 2 cut(s) 391, 460
PspN4I GGNNCC 2 cut(s) 390, 447
PspPI GGNCC 1 cut(s) 445
PspPPI RGGWCCY 1 cut(s) 445
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 1 cut(s) 472
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 2 cut(s) 83, 376
Sau96I GGNCC 1 cut(s) 445
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 3 cut(s) 338, 393, 462
SduI GDGCHC 2 cut(s) 336, 417
SetI ASST 2 cut(s) 250, 325
SfaNI GCATC 1 cut(s) 82
SfcI CTRYAG 1 cut(s) 402
SfuI TTCGAA 1 cut(s) 25
SgrAI CRCCGGYG 1 cut(s) 230
SinI GGWCC 1 cut(s) 445
SmiMI CAYNNNNRTG 1 cut(s) 276
Sse9I AATT 3 cut(s) 6, 27, 140
SsiI CCGC 1 cut(s) 305
SspMI CTAG 1 cut(s) 210
StyD4I CCNGG 3 cut(s) 336, 391, 460
TaaI ACNGT 2 cut(s) 121, 170
TaqI TCGA 2 cut(s) 25, 204
TasI AATT 3 cut(s) 6, 27, 140
Tru1I TTAA 1 cut(s) 472
Tru9I TTAA 1 cut(s) 472
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 226
TspGWI ACGGA 1 cut(s) 425
TspRI CASTG 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 445
XcmI CCANNNNNNNNNTGG 1 cut(s) 59
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.