AT1G15010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009102
Physical Location & Seq
Forward (+)
5171181 .. 5171956
776 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15010.1

Sequence Viewer

Length: 429 bp
ATGGAAATGATACTGATCTCGTCATCGACACTCAGGTTCCATCCATTGAGGACATCACAAAGAATCGCCACCGGAACCAATAGAAGACGAACCACCACCGTGTGTGCAGACTACTACAGAGGAGGAAGAACGGTGGACGAGAACATGGTGGTCCTTAGGAAACGAATCCATGAGATGAAGATGGTTGAACGCAACTTTGAACCTCCTTCTCATTGGATGCAATGGGAGAAACGTTTCTACTGCAACTACGACGCTACTATATGTGATGCACTCACTCTTCTCCAAACTTTTCTCATGAACTCTCGTCCCAGCGTCGCGTTTGGAACGTGTCTTCTTCTCCTCGTCAGCGTTCCCGTCTCCTCCGCCGTTTTTGCTTTTCGCATCCTTGATCTAGCTCTTTGGCTTTTGGACGCCGTTCACGTAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.46

Weight (kDa)

9.33

Isoelectric Point (pI)

57.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 317
AciI CCGC 1 cut(s) 363
AclI AACGTT 1 cut(s) 232
AcyI GRCGYC 1 cut(s) 411
AdeI CACNNNGTG 1 cut(s) 102
AflIII ACRYGT 1 cut(s) 326
AgsI TTSAA 2 cut(s) 188, 200
AleI CACNNNNGTG 1 cut(s) 98
AluBI AGCT 1 cut(s) 395
AluI AGCT 1 cut(s) 395
Alw26I GTCTC 1 cut(s) 361
Asp700I GAANNNNTTC 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 151
AvaII GGWCC 1 cut(s) 151
AxyI CCTNAGG 1 cut(s) 155
BbsI GAAGAC 2 cut(s) 91, 323
BccI CCATC 2 cut(s) 48, 175
BceAI ACGGC 2 cut(s) 350, 398
BcoDI GTCTC 1 cut(s) 361
BfaI CTAG 1 cut(s) 392
BfmI CTRYAG 1 cut(s) 115
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 2 cut(s) 38, 76
BmsI GCATC 3 cut(s) 207, 256, 390
BpiI GAAGAC 2 cut(s) 91, 323
BsaAI YACGTR 1 cut(s) 421
BsaBI GATNNNNATC 1 cut(s) 14
BsaHI GRCGYC 1 cut(s) 411
BsaWI WCCGGW 1 cut(s) 71
Bse21I CCTNAGG 1 cut(s) 155
Bse3DI GCAATG 1 cut(s) 227
Bse8I GATNNNNATC 1 cut(s) 14
BseGI GGATG 3 cut(s) 40, 222, 381
BseJI GATNNNNATC 1 cut(s) 14
BseMI GCAATG 1 cut(s) 227
BseMII CTCAG 1 cut(s) 46
BseRI GAGGAG 3 cut(s) 135, 329, 349
BseYI CCCAGC 1 cut(s) 308
BsgI GTGCAG 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 317
BsiSI CCGG 1 cut(s) 72
BslFI GGGAC 1 cut(s) 291
BsmAI GTCTC 1 cut(s) 361
BsmBI CGTCTC 1 cut(s) 361
BsmFI GGGAC 1 cut(s) 291
Bsp143I GATC 2 cut(s) 15, 388
BspACI CCGC 1 cut(s) 363
BspCNI CTCAG 1 cut(s) 45
BspFNI CGCG 1 cut(s) 317
BspHI TCATGA 1 cut(s) 294
BspLI GGNNCC 2 cut(s) 38, 76
BsrDI GCAATG 1 cut(s) 227
BssMI GATC 2 cut(s) 15, 388
BssNI GRCGYC 1 cut(s) 411
Bst4CI ACNGT 2 cut(s) 100, 133
Bst6I CTCTTC 1 cut(s) 282
BstACI GRCGYC 1 cut(s) 411
BstBAI YACGTR 1 cut(s) 421
BstDEI CTNAG 2 cut(s) 32, 155
BstF5I GGATG 3 cut(s) 40, 222, 381
BstFNI CGCG 1 cut(s) 317
BstKTI GATC 2 cut(s) 18, 391
BstMAI GTCTC 1 cut(s) 361
BstMBI GATC 2 cut(s) 15, 388
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstSFI CTRYAG 1 cut(s) 115
BstUI CGCG 1 cut(s) 317
BstV2I GAAGAC 2 cut(s) 91, 323
Bsu36I CCTNAGG 1 cut(s) 155
BtsCI GGATG 3 cut(s) 40, 222, 381
CciI TCATGA 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 151
CseI GACGC 3 cut(s) 260, 301, 419
CviAII CATG 3 cut(s) 145, 170, 295
CviJI RGCY 2 cut(s) 395, 403
CviKI_1 RGCY 2 cut(s) 395, 403
DdeI CTNAG 2 cut(s) 32, 155
DpnI GATC 2 cut(s) 17, 390
DpnII GATC 2 cut(s) 15, 388
DraIII CACNNNGTG 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
EciI GGCGGA 1 cut(s) 352
Eco47I GGWCC 1 cut(s) 151
Eco81I CCTNAGG 1 cut(s) 155
Esp3I CGTCTC 1 cut(s) 361
FaeI CATG 3 cut(s) 148, 173, 298
FaiI YATR 6 cut(s) 146, 171, 260, 262, 296, 427
FaqI GGGAC 1 cut(s) 291
FatI CATG 3 cut(s) 144, 169, 294
FokI GGATG 3 cut(s) 27, 229, 368
FspBI CTAG 1 cut(s) 392
GsaI CCCAGC 1 cut(s) 312
HapII CCGG 1 cut(s) 72
HgaI GACGC 3 cut(s) 260, 301, 419
Hin1I GRCGYC 1 cut(s) 411
Hin1II CATG 3 cut(s) 148, 173, 298
HinfI GANTC 2 cut(s) 63, 165
HpaII CCGG 1 cut(s) 72
Hpy166II GTNNAC 2 cut(s) 136, 418
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 2 cut(s) 136, 418
Hpy99I CGWCG 2 cut(s) 254, 317
HpyAV CCTTC 1 cut(s) 216
HpyCH4III ACNGT 2 cut(s) 100, 133
HpyCH4IV ACGT 3 cut(s) 232, 326, 420
HpyCH4V TGCA 4 cut(s) 107, 220, 243, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 2 cut(s) 32, 155
HpySE526I ACGT 3 cut(s) 232, 326, 420
Hsp92I GRCGYC 1 cut(s) 411
Hsp92II CATG 3 cut(s) 148, 173, 298
Kzo9I GATC 2 cut(s) 15, 388
LpnPI CCDG 3 cut(s) 19, 85, 322
LweI GCATC 3 cut(s) 207, 256, 390
MaeI CTAG 1 cut(s) 392
MaeII ACGT 3 cut(s) 232, 326, 420
MalI GATC 2 cut(s) 17, 390
MboI GATC 2 cut(s) 15, 388
MboII GAAGA 6 cut(s) 96, 138, 190, 269, 323, 326
MnlI CCTC 6 cut(s) 42, 113, 116, 213, 350, 370
MroXI GAANNNNTTC 1 cut(s) 233
MslI CAYNNNNRTG 1 cut(s) 98
MspI CCGG 1 cut(s) 72
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 1 cut(s) 371
NdeII GATC 2 cut(s) 15, 388
NlaIII CATG 3 cut(s) 148, 173, 298
NlaIV GGNNCC 2 cut(s) 38, 76
OliI CACNNNNGTG 1 cut(s) 98
PagI TCATGA 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 417
PdmI GAANNNNTTC 1 cut(s) 233
PfeI GAWTC 2 cut(s) 63, 165
Ppu21I YACGTR 1 cut(s) 421
Psp1406I AACGTT 1 cut(s) 232
PspFI CCCAGC 1 cut(s) 308
PspN4I GGNNCC 2 cut(s) 38, 76
PspPI GGNCC 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 98
Sau3AI GATC 2 cut(s) 15, 388
Sau96I GGNCC 1 cut(s) 151
SetI ASST 6 cut(s) 38, 205, 235, 329, 397, 423
SfaNI GCATC 3 cut(s) 207, 256, 390
SfcI CTRYAG 1 cut(s) 115
SinI GGWCC 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 98
SsiI CCGC 1 cut(s) 363
SspMI CTAG 1 cut(s) 392
TaaI ACNGT 2 cut(s) 100, 133
TaiI ACGT 3 cut(s) 235, 329, 423
TaqI TCGA 1 cut(s) 26
TfiI GAWTC 2 cut(s) 63, 165
TspDTI ATGAA 2 cut(s) 191, 311
VpaK11BI GGWCC 1 cut(s) 151
XmnI GAANNNNTTC 1 cut(s) 233
XspI CTAG 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.