Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009102

Physical Location & Seq

Genomic Coordinates Reverse (-)

54581144 .. 54582822

Gene Structure 1679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG394300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCATCAACTTCTTCACTGCTCCTCTCTTCTTCTTCTTCTTCTTCCTCCTCCATTTTCAACCCGTTTTCGACTTCTTCACCGAAAGCGGGAAGCGTAATTCGACAACAACGGAGGTCTAGAATTGTTGCATCGAGTAGAAAAGAAGCGCACGATCACCACCAGAACTACAGCAGCAGGCTCGTGGATGAGAACATGATCGTTTTGAGGAAGAAAATCCACGAGATGAAGATGGTGGAGAGGAACTACGAGCCTCCGGCGGAGTGGATGGACTGGGAGAAGAGGTACTACACCAGCTACGACTCGTTCATATGCCAAGTCATGGGTTTGTTGCAGTCGCAGTTGATGAACACCAGGCCGAGCTTGGCTCTCGCATTCATGGCTTTGATCGTTTTGAGCGTCCCGGCCTCGACGTTCATGGTGTTCTCCCATTTGCTGGAGATCACAAAAGGAGCATTGACCAGTGGTTTTGGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.92

Weight (kDa)

9.56

Isoelectric Point (pI)

61.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15010 AT2G01300
fragaria_vesca	FvH4_4g32180
malus_domestica	MD09G1259700.v1.1 MD13G1027500.v1.1 MD16G1030600.v1.1
prunus_persica	Prupe.1G322400_v2.0.a1 Prupe.3G151400_v2.0.a1
pyrus_communis	pycom09g17440 pycom13g02620 pycom16g02670
rosa_chinensis	RchiOBHm_Chr4g0440921
rosa_laevigata	RLG00000006140
rosa_multiflora	Rmu_sc0000424.1_g000022 Rmu_sc0005054.1_g000003
rosa_roxburghii	Rroxscaffold_5G00381780
rosa_rugosa	Rorug04G0329200
rosa_samantha	Rh4AG381100 Rh4BG394300 Rh4CG409200 Rh4DG387600
rosa_wichuraiana	Rw4G032820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	322, 436
AciI	CCGC	2 cut(s)	89, 260
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	3 cut(s)	89, 322, 436
AgsI	TTSAA	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	353
AluBI	AGCT	2 cut(s)	297, 363
AluI	AGCT	2 cut(s)	297, 363
AoxI	GGCC	2 cut(s)	356, 405
ApeKI	GCWGC	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	151
AsuC2I	CCSGG	1 cut(s)	404
AsuHPI	GGTGA	2 cut(s)	72, 149
BarI	GAAGNNNNNNTAC	2 cut(s)	272, 304
BauI	CACGAG	2 cut(s)	182, 221
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	2 cut(s)	226, 262
BcgI	CGANNNNNNTGC	2 cut(s)	163, 197
BciT130I	CCWGG	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	404
BfaI	CTAG	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	169
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
Bme1390I	CCNGG	2 cut(s)	355, 404
BmrFI	CCNGG	2 cut(s)	355, 404
BmrI	ACTGGG	1 cut(s)	283
BmsI	GCATC	2 cut(s)	14, 140
BmuI	ACTGGG	1 cut(s)	283
BplI	GAGNNNNNCTC	2 cut(s)	352, 384
BpmI	CTGGAG	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	404
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 322, 436
Bse1I	ACTGG	2 cut(s)	278, 462
BseBI	CCWGG	1 cut(s)	355
BseGI	GGATG	2 cut(s)	193, 273
BseLI	CCNNNNNNNGG	3 cut(s)	89, 322, 436
BseNI	ACTGG	2 cut(s)	278, 462
BseRI	GAGGAG	2 cut(s)	14, 40
BseXI	GCAGC	1 cut(s)	186
BshFI	GGCC	2 cut(s)	358, 407
BsiSI	CCGG	2 cut(s)	257, 404
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	3 cut(s)	89, 322, 436
BsmFI	GGGAC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	374
BsnI	GGCC	2 cut(s)	358, 407
Bsp143I	GATC	4 cut(s)	154, 198, 387, 441
BspACI	CCGC	2 cut(s)	89, 260
BspANI	GGCC	2 cut(s)	358, 407
BsrI	ACTGG	2 cut(s)	278, 462
BssMI	GATC	4 cut(s)	154, 198, 387, 441
BssSI	CACGAG	2 cut(s)	182, 221
Bst2BI	CACGAG	2 cut(s)	182, 221
Bst2UI	CCWGG	1 cut(s)	355
Bst6I	CTCTTC	2 cut(s)	34, 275
BstC8I	GCNNGC	1 cut(s)	179
BstF5I	GGATG	2 cut(s)	193, 273
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	4 cut(s)	157, 201, 390, 444
BstMBI	GATC	4 cut(s)	154, 198, 387, 441
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNI	CCWGG	1 cut(s)	355
BstSCI	CCNGG	2 cut(s)	353, 402
BstSFI	CTRYAG	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	358, 407
BtsCI	GGATG	2 cut(s)	193, 273
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	2 cut(s)	17, 469
Cac8I	GCNNGC	1 cut(s)	179
CfoI	GCGC	1 cut(s)	151
CseI	GACGC	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	4 cut(s)	196, 322, 379, 418
CviJI	RGCY	8 cut(s)	181, 253, 297, 358, 363, 368, 383, 407
CviKI_1	RGCY	8 cut(s)	181, 253, 297, 358, 363, 368, 383, 407
CviQI	GTAC	1 cut(s)	286
DpnI	GATC	4 cut(s)	156, 200, 389, 443
DpnII	GATC	4 cut(s)	154, 198, 387, 441
Eam1104I	CTCTTC	2 cut(s)	34, 275
EarI	CTCTTC	2 cut(s)	34, 275
EciI	GGCGGA	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	353
FaeI	CATG	4 cut(s)	199, 325, 382, 421
FaiI	YATR	8 cut(s)	197, 311, 313, 323, 380, 419, 476, 478
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	4 cut(s)	195, 321, 378, 417
FauI	CCCGC	1 cut(s)	82
FauNDI	CATATG	1 cut(s)	311
Fnu4HI	GCNGC	1 cut(s)	175
FokI	GGATG	2 cut(s)	200, 280
Fsp4HI	GCNGC	1 cut(s)	175
FspBI	CTAG	1 cut(s)	120
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	175
GsuI	CTGGAG	1 cut(s)	458
HaeIII	GGCC	2 cut(s)	358, 407
HapII	CCGG	2 cut(s)	257, 404
HgaI	GACGC	1 cut(s)	388
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	4 cut(s)	199, 325, 382, 421
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	2 cut(s)	257, 404
HphI	GGTGA	2 cut(s)	72, 149
Hpy188III	TCNNGA	1 cut(s)	120
Hpy99I	CGWCG	1 cut(s)	415
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	2 cut(s)	131, 334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpySE526I	ACGT	1 cut(s)	413
Hsp92II	CATG	4 cut(s)	199, 325, 382, 421
HspAI	GCGC	1 cut(s)	149
Kzo9I	GATC	4 cut(s)	154, 198, 387, 441
LmnI	GCTCC	2 cut(s)	27, 452
Lsp1109I	GCAGC	1 cut(s)	186
LweI	GCATC	2 cut(s)	14, 140
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	1 cut(s)	413
MalI	GATC	4 cut(s)	156, 200, 389, 443
MboI	GATC	4 cut(s)	154, 198, 387, 441
MluCI	AATT	2 cut(s)	99, 123
MlyI	GAGTC	1 cut(s)	296
MnlI	CCTC	9 cut(s)	35, 58, 61, 108, 201, 234, 264, 276, 418
MspI	CCGG	2 cut(s)	257, 404
MspR9I	CCNGG	2 cut(s)	355, 404
Mva1269I	GAATGC	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	355
MwoI	GCNNNNNNNGC	1 cut(s)	380
NciI	CCSGG	1 cut(s)	404
NdeI	CATATG	1 cut(s)	311
NdeII	GATC	4 cut(s)	154, 198, 387, 441
NlaIII	CATG	4 cut(s)	199, 325, 382, 421
NmeAIII	GCCGAG	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PctI	GAATGC	1 cut(s)	374
PflMI	CCANNNNNTGG	2 cut(s)	322, 436
PkrI	GCNGC	1 cut(s)	176
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	4 cut(s)	154, 198, 387, 441
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	2 cut(s)	355, 404
SetI	ASST	5 cut(s)	119, 287, 299, 365, 416
SfaNI	GCATC	2 cut(s)	14, 140
SfcI	CTRYAG	1 cut(s)	169
Sse9I	AATT	2 cut(s)	99, 123
SsiI	CCGC	2 cut(s)	89, 260
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	353, 402
TaiI	ACGT	1 cut(s)	416
TaqI	TCGA	4 cut(s)	71, 103, 134, 410
TasI	AATT	2 cut(s)	99, 123
TscAI	CASTG	2 cut(s)	24, 469
TseI	GCWGC	1 cut(s)	174
TspDTI	ATGAA	5 cut(s)	242, 298, 362, 367, 406
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	2 cut(s)	24, 469
Van91I	CCANNNNNTGG	2 cut(s)	322, 436
XbaI	TCTAGA	1 cut(s)	119
XcmI	CCANNNNNNNNNTGG	1 cut(s)	361
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.