Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0009102

Physical Location & Seq

Genomic Coordinates Reverse (-)

60399274 .. 60399902

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG387600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCATCAACTTCTTCACTGCTCCTCTCTTCTTCTTCTTCCTCCTCCATTTTCAACCCGTTTTCGACTTCTTCACCGAAAGCGGGAAGCGTAATTCGACAACAACGGAGGTCTAGAATTGTTGCATCGAGTAGAAAAGAAGCGCATGATCACCACCAGAACTACAGCAGCAGGCTTGTGGATGAGAACATGATCGTTTTGAGGAAGAAAATCCACGAGATGAAGATGGTGGAGAGGAACTACGAGCCTCCGGCGGAGTGGATGGACTGGGAGAAGAGGTACTACACCAGCTACGACTCGTTCATATGCCAAGTCATGGGTTTGTTGCAGTCGCAGTTGATGAACACCAGGCCGAGCTTGGCTCTCGCATTCATGGCTTTGATCGTTTTGAGCGTCCCAGCCTCGACGTTCATGGTGTTCTCCCATTTGCTGGAGATCACAAAAGGAGCATTGACCAGTGGTTTTGGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.73

Weight (kDa)

9.56

Isoelectric Point (pI)

60.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15010 AT2G01300
fragaria_vesca	FvH4_4g32180
malus_domestica	MD09G1259700.v1.1 MD13G1027500.v1.1 MD16G1030600.v1.1
prunus_persica	Prupe.1G322400_v2.0.a1 Prupe.3G151400_v2.0.a1
pyrus_communis	pycom09g17440 pycom13g02620 pycom16g02670
rosa_chinensis	RchiOBHm_Chr4g0440921
rosa_laevigata	RLG00000006140
rosa_multiflora	Rmu_sc0000424.1_g000022 Rmu_sc0005054.1_g000003
rosa_roxburghii	Rroxscaffold_5G00381780
rosa_rugosa	Rorug04G0329200
rosa_samantha	Rh4AG381100 Rh4BG394300 Rh4CG409200 Rh4DG387600
rosa_wichuraiana	Rw4G032820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	316, 430
AciI	CCGC	2 cut(s)	83, 254
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	3 cut(s)	83, 316, 430
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	347
AluBI	AGCT	2 cut(s)	291, 357
AluI	AGCT	2 cut(s)	291, 357
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	145
AsuHPI	GGTGA	2 cut(s)	66, 143
BarI	GAAGNNNNNNTAC	2 cut(s)	266, 298
BauI	CACGAG	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	2 cut(s)	220, 256
BciT130I	CCWGG	1 cut(s)	349
BclI	TGATCA	1 cut(s)	148
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	163
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	349
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	2 cut(s)	14, 134
BmuI	ACTGGG	1 cut(s)	277
BplI	GAGNNNNNCTC	2 cut(s)	346, 378
BpmI	CTGGAG	1 cut(s)	452
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 316, 430
Bse1I	ACTGG	2 cut(s)	272, 456
BseBI	CCWGG	1 cut(s)	349
BseGI	GGATG	2 cut(s)	187, 267
BseLI	CCNNNNNNNGG	3 cut(s)	83, 316, 430
BseNI	ACTGG	2 cut(s)	272, 456
BseRI	GAGGAG	2 cut(s)	14, 34
BseXI	GCAGC	1 cut(s)	180
BseYI	CCCAGC	1 cut(s)	397
BshFI	GGCC	1 cut(s)	352
BsiSI	CCGG	1 cut(s)	251
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	3 cut(s)	83, 316, 430
BsmFI	GGGAC	1 cut(s)	380
BsmI	GAATGC	1 cut(s)	368
BsnI	GGCC	1 cut(s)	352
Bsp143I	GATC	4 cut(s)	148, 192, 381, 435
BspACI	CCGC	2 cut(s)	83, 254
BspANI	GGCC	1 cut(s)	352
BsrI	ACTGG	2 cut(s)	272, 456
BssMI	GATC	4 cut(s)	148, 192, 381, 435
BssSI	CACGAG	1 cut(s)	215
Bst2BI	CACGAG	1 cut(s)	215
Bst2UI	CCWGG	1 cut(s)	349
Bst6I	CTCTTC	2 cut(s)	34, 269
BstC8I	GCNNGC	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	187, 267
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	4 cut(s)	151, 195, 384, 438
BstMBI	GATC	4 cut(s)	148, 192, 381, 435
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNI	CCWGG	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	347
BstSFI	CTRYAG	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	352
BtsCI	GGATG	2 cut(s)	187, 267
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	2 cut(s)	17, 463
Cac8I	GCNNGC	1 cut(s)	173
CfoI	GCGC	1 cut(s)	145
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	5 cut(s)	146, 190, 316, 373, 412
CviJI	RGCY	8 cut(s)	175, 247, 291, 352, 357, 362, 377, 401
CviKI_1	RGCY	8 cut(s)	175, 247, 291, 352, 357, 362, 377, 401
CviQI	GTAC	1 cut(s)	280
DpnI	GATC	4 cut(s)	150, 194, 383, 437
DpnII	GATC	4 cut(s)	148, 192, 381, 435
Eam1104I	CTCTTC	2 cut(s)	34, 269
EarI	CTCTTC	2 cut(s)	34, 269
EciI	GGCGGA	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	347
FaeI	CATG	5 cut(s)	149, 193, 319, 376, 415
FaiI	YATR	8 cut(s)	147, 191, 305, 307, 317, 374, 413, 472
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	5 cut(s)	145, 189, 315, 372, 411
FauI	CCCGC	1 cut(s)	76
FauNDI	CATATG	1 cut(s)	305
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	1 cut(s)	169
FokI	GGATG	2 cut(s)	194, 274
Fsp4HI	GCNGC	1 cut(s)	169
FspBI	CTAG	1 cut(s)	114
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	169
GsaI	CCCAGC	1 cut(s)	401
GsuI	CTGGAG	1 cut(s)	452
HaeIII	GGCC	1 cut(s)	352
HapII	CCGG	1 cut(s)	251
HgaI	GACGC	1 cut(s)	382
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	5 cut(s)	149, 193, 319, 376, 415
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	2 cut(s)	66, 143
Hpy188III	TCNNGA	1 cut(s)	114
Hpy99I	CGWCG	1 cut(s)	409
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	2 cut(s)	125, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpySE526I	ACGT	1 cut(s)	407
Hsp92II	CATG	5 cut(s)	149, 193, 319, 376, 415
HspAI	GCGC	1 cut(s)	143
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	4 cut(s)	148, 192, 381, 435
LmnI	GCTCC	2 cut(s)	27, 446
Lsp1109I	GCAGC	1 cut(s)	180
LweI	GCATC	2 cut(s)	14, 134
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	407
MalI	GATC	4 cut(s)	150, 194, 383, 437
MboI	GATC	4 cut(s)	148, 192, 381, 435
MboII	GAAGA	9 cut(s)	6, 21, 24, 27, 30, 63, 217, 235, 286
MluCI	AATT	2 cut(s)	93, 117
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	9 cut(s)	35, 52, 55, 102, 195, 228, 258, 270, 412
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	1 cut(s)	349
Mva1269I	GAATGC	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	1 cut(s)	374
NdeI	CATATG	1 cut(s)	305
NdeII	GATC	4 cut(s)	148, 192, 381, 435
NlaIII	CATG	5 cut(s)	149, 193, 319, 376, 415
NmeAIII	GCCGAG	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PctI	GAATGC	1 cut(s)	368
PflMI	CCANNNNNTGG	2 cut(s)	316, 430
PkrI	GCNGC	1 cut(s)	170
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	347
PspFI	CCCAGC	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	347
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	4 cut(s)	148, 192, 381, 435
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	349
SetI	ASST	5 cut(s)	113, 281, 293, 359, 410
SfaNI	GCATC	2 cut(s)	14, 134
SfcI	CTRYAG	1 cut(s)	163
Sse9I	AATT	2 cut(s)	93, 117
SsiI	CCGC	2 cut(s)	83, 254
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	347
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	4 cut(s)	65, 97, 128, 404
TasI	AATT	2 cut(s)	93, 117
TscAI	CASTG	2 cut(s)	24, 463
TseI	GCWGC	1 cut(s)	168
TspDTI	ATGAA	5 cut(s)	236, 292, 356, 361, 400
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	2 cut(s)	24, 463
Van91I	CCANNNNNTGG	2 cut(s)	316, 430
XbaI	TCTAGA	1 cut(s)	113
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.